ViewGene
Locus Name:
GeneID:
Location:

GeneID:1031
TrivialName: PA14_12160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12160
PAO1 Ortholog Locus:PA3992
Sequence Length:1347
Protein Length:448
Start: 1052838
Stop: 1051492
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07379.1|AE004817_3 (AE004817) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 447/448 (99%), Positives = 448/448 (100%)
Sequence:
ATGCGTAACCCCGAACGATCCGCCCTGCTGAAGGTGAGCGGGCTGCTGGGCAGCACCGTCGTCGCCATGGGG
CTTGGCCTCTCCAGCGCCTGCGCGCAGAAGAATCCGACAGTCGAATACAACCAGCCTGCCGCTCCCCTGCAG
ACCAAGGCGCCCTTCTCCGGCGCCGGCCCGGCCGCCTCGGTGCCCGCTGGCGCGCCGAACGAGGCCCAACCT
GGGCAGAGCTTCGAACAGTGGCGCGACGCCTTCCGTCAACAGGCGCTGGCCGGTGGAATCGATGCGCAGACC
TTCGATCGCGCCTTCGCCGGCGTCCAGCCCGATCCCGCCGTGGTCGAAGCAGACCGCAGCCAGCCGGAATTC
ACCCGACCGGTATGGAAGTACCTGGAAGGCGCCCTCGATCCGCTGCGCGTTCGCCAGGGCCAGGCGCGCCTG
GCGCAGCATGCGCGCATCCTCGGCGAAGTCGACGCGCGCTATGCGGTGGATGCGGATGCGGTGGTGGCGATC
TGGGGCATGGAGAGCAACTACGGTTCGCACATGGGCAACAAGAACGTGATCCGCTCCCTGGCGACCCTCGCC
TATGAAGGACGCCGTCCGGAATTCGCCCACGCCCAGTTGCTCGCCGCCCTGAAGATCCTCCAGCACGGCGAC
GTTCCGGCCTCCTTCATGATCGGCTCCTGGGCCGGCGCCATGGGCCAGACCCAGTTCATCCCAACCACCTAC
AACCAGTATGCCGTGGACTTCGACGGCGACGGCAAGCGTGACATCTGGGGCTCGCCCGGCGACGCCCTGGCC
TCCACCGCCAACTACCTGAAAGCCTCCGGCTGGATCGCCGGACAACCCTGGGGGTTCGAAGTCCGCCTGCCG
GCAGGCTTCGACTATTCCCTGGCGGAACTCACCATCCGCAAGCCCCTGGGCGAGTGGCAAGGGATGGGCGTA
CAAGGCGTCAACGGCGGCCCCCTGCCCTCCGGGCTCTCCGGCGAACAGGCCTCGCTGCTGCTGCCGGCCGGG
CACCGCGGCCCGGCCTTCCTGGTGCTGCACAACTTCCGCGCCATCCTCAAGTACAACAACTCCAGTGCCTAT
GCCCTGGCCGTCGGCCTGCTCGCCGACAGCTTCAAGGGCGGCGGCCGGATAGTCGGCGCCTGGCCACTGGAG
GATGTTCCGCTGAGCCGCTCGCAGCGCATCGAGCTGCAACGGCAACTGGCCGCCCGCGGACACGATCCGGGC
GCGGTGGACGGCATCATCGGCGCCAATACGCGCAAGGCGATCCGCGCCTGCCAGCAGGAGTTCGGCTGGCCG
GCGGACGGCTATCCGACCCCGGCGCTGCTCGACCGCCTGCGGACGCCATAG
Translation:
MRNPERSALLKVSGLLGSTVVAMGLGLSSACAQKNPTVEYNQPAAPLQTKAPFSGAGPAASVPAGAPNEAQP
GQSFEQWRDAFRQQALAGGIDAQTFDRAFAGVQPDPAVVEADRSQPEFTRPVWKYLEGALDPLRVRQGQARL
AQHARILGEVDARYAVDADAVVAIWGMESNYGSHMGNKNVIRSLATLAYEGRRPEFAHAQLLAALKILQHGD
VPASFMIGSWAGAMGQTQFIPTTYNQYAVDFDGDGKRDIWGSPGDALASTANYLKASGWIAGQPWGFEVRLP
AGFDYSLAELTIRKPLGEWQGMGVQGVNGGPLPSGLSGEQASLLLPAGHRGPAFLVLHNFRAILKYNNSSAY
ALAVGLLADSFKGGGRIVGAWPLEDVPLSRSQRIELQRQLAARGHDPGAVDGIIGANTRKAIRACQQEFGWP
ADGYPTPALLDRLRTP*
AnnotationID:1040GeneID:1031
AnnotatorUID: danlee
Modification Date/Time: 2006-02-10 16:04:00
Gene Name:
Confidence Code:3
GeneProduct:putative murein transglycosylase
Cell Localization:()
Synonyms:PA3992
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:

gb|AAL84245.1|AF458045_1 (AF458045) type III effector HopPmaG [Pseudomonas syringae pv. maculicola]
Length = 413
Score =  394 bits (1011), Expect = e-109
Identities = 205/397 (51%), Positives = 266/397 (67%), Gaps = 6/397 (1%)






 
Structural Features:
gnl|CDD|12298 COG2951, MltB, Membrane-bound lytic murein transglycosylase B
[Cell envelope biogenesis, outer membrane]
Length = 343
Score =  360 bits (924), Expect = e-100
Identities = 169/344 (49%), Positives = 208/344 (60%), Gaps = 3/344 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2065




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1031
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1852
                           PA3992_tr
                           translation of PA3992
                           448
                           99.77
                           99.99
                           0
                           2341.0
     

     
     
64212
                           gb|AAG07379.1|AE004817_3
                           (AE004817) hypothetical protein PA3992 [Pseudomonas aeruginosa PAO1]
                           448
                           99.77
                           99.99
                           0
                           2341.0
     

     
     
64213
                           gb|AAO58246.1|
                           (AE016873) transglycosylase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           459
                           59.47
                           72.33
                           25
                           1388.0
     

     
     
64214
                           gb|AAN70367.1|AE016678_8
                           (AE016792) membrane-bound lytic murein transglycosylase, putative [Pseudomonas putida KT2440]
                           456
                           58.99
                           70.17
                           26
                           1352.0
     

     
     
64215
                           gb|AAM39253.1|
                           (AE008925) lytic murein transglycosylase [Xanthomonas axonopodis pv. citri str. 306]
                           451
                           48.55
                           62.97
                           29
                           1042.0
     

     






      

          
GC ORFID: 44033How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3992Glimmer Score: 

          
Start: 3901100Stop: 3902446

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3992 translation of PA3992Homolog Bit Score 906.0

          
Other Homologs:  t_PA1171 (ORF: BLASTX 364.0), t_PA3992 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAACCCCGAACGATCCGCCCTGCTGAAGGTGAGCGGGCTGCTGGGCAGCACCGTCGTCGCCATGGGG 
CTTGGCCTCTCCAGCGCCTGCGCGCAGAAGAATCCGACAGTCGAATACAACCAGCCTGCCGCTCCCCTGCAG 
ACCAAGGCGCCCTTCTCCGGCGCCGGCCCGGCCGCCTCGGTGCCCGCTGGCGCGCCGAACGAGGCCCAACCT 
GGGCAGAGCTTCGAACAGTGGCGCGACGCCTTCCGTCAACAGGCGCTGGCCGGTGGAATCGATGCGCAGACC 
TTCGATCGCGCCTTCGCCGGCGTCCAGCCCGATCCCGCCGTGGTCGAAGCAGACCGCAGCCAGCCGGAATTC 
ACCCGACCGGTATGGAAGTACCTGGAAGGCGCCCTCGATCCGCTGCGCGTTCGCCAGGGCCAGGCGCGCCTG 
GCGCAGCATGCGCGCATCCTCGGCGAAGTCGACGCGCGCTATGCGGTGGATGCGGATGCGGTGGTGGCGATC 
TGGGGCATGGAGAGCAACTACGGTTCGCACATGGGCAACAAGAACGTGATCCGCTCCCTGGCGACCCTCGCC 
TATGAAGGACGCCGTCCGGAATTCGCCCACGCCCAGTTGCTCGCCGCCCTGAAGATCCTCCAGCACGGCGAC 
GTTCCGGCCTCCTTCATGATCGGCTCCTGGGCCGGCGCCATGGGCCAGACCCAGTTCATCCCAACCACCTAC 
AACCAGTATGCCGTGGACTTCGACGGCGACGGCAAGCGTGACATCTGGGGCTCGCCCGGCGACGCCCTGGCC 
TCCACCGCCAACTACCTGAAAGCCTCCGGCTGGATCGCCGGACAACCCTGGGGGTTCGAAGTCCGCCTGCCG 
GCAGGCTTCGACTATTCCCTGGCGGAACTCACCATCCGCAAGCCCCTGGGCGAGTGGCAAGGGATGGGCGTA 
CAAGGCGTCAACGGCGGCCCCCTGCCCTCCGGGCTCTCCGGCGAACAGGCCTCGCTGCTGCTGCCGGCCGGG 
CACCGCGGCCCGGCCTTCCTGGTGCTGCACAACTTCCGCGCCATCCTCAAGTACAACAACTCCAGTGCCTAT 
GCCCTGGCCGTCGGCCTGCTCGCCGACAGCTTCAAGGGCGGCGGCCGGATAGTCGGCGCCTGGCCACTGGAG 
GATGTTCCGCTGAGCCGCTCGCAGCGCATCGAGCTGCAACGGCAACTGGCCGCCCGCGGACACGATCCGGGC 
GCGGTGGACGGCATCATCGGCGCCAATACGCGCAAGGCGATCCGCGCCTGCCAGCAGGAGTTCGGCTGGCCG 
GCGGACGGCTATCCGACCCCGGCGCTGCTCGACCGCCTGCGGACGCCATAG