ViewGene
Locus Name:
GeneID:
Location:

GeneID:1030
TrivialName: PA14_35620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35620
PAO1 Ortholog Locus:PA2241
Sequence Length:1410
Protein Length:469
Start: 3166302
Stop: 3164893
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05629.1|AE004649_20 (AE004649) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 465/469 (99%), Positives = 468/469 (99%)
Sequence:
ATGCTCGGCTCCGCCTTCTGGCTGACCCTGGCCACCCTGCTCGGCCTGTGCCTGGGCTTCGCCCGCGAATGG
CTGCTGGTGGCCTCCTGGGGCGCCGGCGAGCGCAGCGACGCCTTCCTCATCGCCCTGTTCCTGCCCGAGGCC
CTGCGCATGTCGCTGGCCGGCGGCGTGCTCAGCGCTGCGGCCCTGCCACTGTTCCTCGAACGCCAGGGCGAA
CGTCGCCTCGACTGGCTGGCGGCGATCCTCCCGGCGCTGCTCGGTATCGCCGTGGCGCTCAGCCTCCTGCTG
CTGGCGGCGGCGCCCTGGCTGGTGCGCTTGCTCGGCCCGGGCCTGGCCGAGACGGCCAGCGCCCAGGCCGCG
GCCAACTTGCGGATCCTCGCCTGGTGCGTGCCGGGACTGATGCTCCATGCGCTGTTCAGCATCCCCCTGCAG
GCCGCCGAGCGTTTCGTCCTGGCTGGGCTCGGCTCGCTGCTGTTCAACCTGCCGCCGGTGCTCTACCTGGCC
TTGCACGGCCAGGCCAGCCAGCCCGAACAACTGGCCCTGGCCTGCCTGCTCGGCAGCCTGCTGATGCCGCTG
GTGCTGCTGCCTTCGCTATGGATCGAGGGCTGGCGGCCCTGGCACTGGCGCCTGTCCGGCGTCGAACTGGGC
GAGCTTGGCGGGCGCATCGGTCCGCTGTTGCTGAGCAACGCCGCCAGCCAGGGCCTGGCGCTGGTCGAGCGG
CTGGTGGCGTCGCTGCTCGGCGAAGGCGCGGTGACCTGGGTCAACCTGGCGCGCAAGCTGATGAACCTGCCG
CTGATCGCCCTGATGAGCCTCAACCAGGTGTTGCTCGGCATGATGAGCCGACGCCAGGGTGGCGAGCGCCTG
GCCCTGCTTCGCCGCGGCCTGGAGACCGCCAGCCTGCTGACCCTGCCGGCCGGGGTCGGGCTGGTCGCTGCC
GCACCCGGCCTGGTGGCCCTGTTGCTGCCGCAGCAGACCGCCGGCTCGCCGTTGCCGGCGCTGCTGGCCTGG
TTCGCCGTGCCACTGGTGTTCGGCGCCTGGAATGCCTTGCTGGCGCGTTACGCCTACGCCGCCGGCGATACT
CGCCTGCCGCTGCGCTGCGAGCTGCTCGGCAGCGCGCTGAACGCCGCGCTGCTGGCGGTCCTGCCGTTGATT
TTCGGACTGCCAGGGATTCCCCTCGCGGCCCTTGGCGGGGTGCTCTGCACCGCGCTGCTGCTGATGCGTCGC
CAGGCCCTGCTCGGCGCCCTGCCCTGGGCCCGGCTGTGGCTACTGAGCGCCCTGGCCATGGCGCTCGCCGCC
GGCCTGCTGTTCCGCATCGACGGTATCTGGCTGCAACTGGGCCTGGGCACCGTCGCCGGCTGCCTGGCGCTG
CTCGGCATGGCGCTCTGGCTGCGGCCCTGGCGCACCGATTGA
Translation:
MLGSAFWLTLATLLGLCLGFAREWLLVASWGAGERSDAFLIALFLPEALRMSLAGGVLSAAALPLFLERQGE
RRLDWLAAILPALLGIAVALSLLLLAAAPWLVRLLGPGLAETASAQAAANLRILAWCVPGLMLHALFSIPLQ
AAERFVLAGLGSLLFNLPPVLYLALHGQASQPEQLALACLLGSLLMPLVLLPSLWIEGWRPWHWRLSGVELG
ELGGRIGPLLLSNAASQGLALVERLVASLLGEGAVTWVNLARKLMNLPLIALMSLNQVLLGMMSRRQGGERL
ALLRRGLETASLLTLPAGVGLVAAAPGLVALLLPQQTAGSPLPALLAWFAVPLVFGAWNALLARYAYAAGDT
RLPLRCELLGSALNAALLAVLPLIFGLPGIPLAALGGVLCTALLLMRRQALLGALPWARLWLLSALAMALAA
GLLFRIDGIWLQLGLGTVAGCLALLGMALWLRPWRTD*
AnnotationID:1039GeneID:1030
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 15:03:46
Gene Name:pslK
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2241
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|71555213|gb|AAZ34424.1|  membrane protein, MviN family [Pseudomonas syringae 
pv. phaseolicola 1448A]
     Length=471
     Score =  613 bits (1581),  Expect = 4e-174
     Identities = 318/467 (68%), Positives = 362/467 (77%), Gaps = 0/467 (0%)

gi|63257247|gb|AAY38343.1|  Virulence factor MVIN-like [Pseudomonas syringae pv. syringae B728a]
     Length=471
     Score =  610 bits (1574),  Expect = 3e-173
     Identities = 316/467 (67%), Positives = 362/467 (77%), Gaps = 0/467 (0%)

gi|28853948|gb|AAO57014.1|  membrane protein, MviN family [Pseudomonas syringae 
pv. tomato str. DC3000]
     Length=471
     Score =  610 bits (1574),  Expect = 3e-173
     Identities = 314/467 (67%), Positives = 363/467 (77%), Gaps = 0/467 (0%)








 
Structural Features:
COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].
             CD-Length = 518 residues, only  73.9% aligned
             Score =  108 bits (271), Expect = 1e-24






   
Genomic Context:






   
Comment:


















    ReferenceID:2063




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32533




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1030_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1030
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1851
                           PA2241_tr
                           translation of PA2241
                           469
                           99.14
                           99.78
                           0
                           2344.0
     

     
     
64210
                           gb|AAG05629.1|AE004649_20
                           (AE004649) hypothetical protein PA2241 [Pseudomonas aeruginosa PAO1]
                           469
                           99.14
                           99.78
                           0
                           2344.0
     

     
     
64211
                           gb|AAO57014.1|
                           (AE016868) membrane protein, MviN family [Pseudomonas syringae pv. tomato str. DC3000]
                           471
                           66.66
                           77.07
                           2
                           1571.0
     

     






      

          
GC ORFID: 44032How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2241Glimmer Score: 

          
Start: 1787614Stop: 1789023

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2241 translation of PA2241Homolog Bit Score 907.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6844 (ORF: BLASTX 610.0), t_PA2241 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGGCTCCGCCTTCTGGCTGACCCTGGCCACCCTGCTCGGCCTGTGCCTGGGCTTCGCCCGCGAATGG 
CTGCTGGTGGCCTCCTGGGGCGCCGGCGAGCGCAGCGACGCCTTCCTCATCGCCCTGTTCCTGCCCGAGGCC 
CTGCGCATGTCGCTGGCCGGCGGCGTGCTCAGCGCTGCGGCCCTGCCACTGTTCCTCGAACGCCAGGGCGAA 
CGTCGCCTCGACTGGCTGGCGGCGATCCTCCCGGCGCTGCTCGGTATCGCCGTGGCGCTCAGCCTCCTGCTG 
CTGGCGGCGGCGCCCTGGCTGGTGCGCTTGCTCGGCCCGGGCCTGGCCGAGACGGCCAGCGCCCAGGCCGCG 
GCCAACTTGCGGATCCTCGCCTGGTGCGTGCCGGGACTGATGCTCCATGCGCTGTTCAGCATCCCCCTGCAG 
GCCGCCGAGCGTTTCGTCCTGGCTGGGCTCGGCTCGCTGCTGTTCAACCTGCCGCCGGTGCTCTACCTGGCC 
TTGCACGGCCAGGCCAGCCAGCCCGAACAACTGGCCCTGGCCTGCCTGCTCGGCAGCCTGCTGATGCCGCTG 
GTGCTGCTGCCTTCGCTATGGATCGAGGGCTGGCGGCCCTGGCACTGGCGCCTGTCCGGCGTCGAACTGGGC 
GAGCTTGGCGGGCGCATCGGTCCGCTGTTGCTGAGCAACGCCGCCAGCCAGGGCCTGGCGCTGGTCGAGCGG 
CTGGTGGCGTCGCTGCTCGGCGAAGGCGCGGTGACCTGGGTCAACCTGGCGCGCAAGCTGATGAACCTGCCG 
CTGATCGCCCTGATGAGCCTCAACCAGGTGTTGCTCGGCATGATGAGCCGACGCCAGGGTGGCGAGCGCCTG 
GCCCTGCTTCGCCGCGGCCTGGAGACCGCCAGCCTGCTGACCCTGCCGGCCGGGGTCGGGCTGGTCGCTGCC 
GCACCCGGCCTGGTGGCCCTGTTGCTGCCGCAGCAGACCGCCGGCTCGCCGTTGCCGGCGCTGCTGGCCTGG 
TTCGCCGTGCCACTGGTGTTCGGCGCCTGGAATGCCTTGCTGGCGCGTTACGCCTACGCCGCCGGCGATACT 
CGCCTGCCGCTGCGCTGCGAGCTGCTCGGCAGCGCGCTGAACGCCGCGCTGCTGGCGGTCCTGCCGTTGATT 
TTCGGACTGCCAGGGATTCCCCTCGCGGCCCTTGGCGGGGTGCTCTGCACCGCGCTGCTGCTGATGCGTCGC 
CAGGCCCTGCTCGGCGCCCTGCCCTGGGCCCGGCTGTGGCTACTGAGCGCCCTGGCCATGGCGCTCGCCGCC 
GGCCTGCTGTTCCGCATCGACGGTATCTGGCTGCAACTGGGCCTGGGCACCGTCGCCGGCTGCCTGGCGCTG 
CTCGGCATGGCGCTCTGGCTGCGGCCCTGGCGCACCGATTGA