ViewGene
Locus Name:
GeneID:
Location:

GeneID:1029
TrivialName: PA14_50290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50290
PAO1 Ortholog Locus:PA1092
Sequence Length:1467
Protein Length:488
Start: 4466873
Stop: 4465407
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04481.1|AE004540_1 (AE004540) flagellin type B [Pseudomonas aeruginosa PAO1]
Identities = 487/488 (99%), Positives = 488/488 (100%)
Sequence:
ATGGCCCTTACAGTCAACACGAACATTGCTTCCCTGAACACTCAGCGCAACCTGAATGCTTCTTCCAACGAC
CTCAACACCTCGTTGCAGCGTCTGACCACCGGCTACCGCATCAACAGCGCCAaGGACGATGCTGCCGGCCTG
CAGATCTCCAACCGCCTGTCCAACCAGATCAGCGGTCTGAACGTTGCCACCCGCAACGCCAACGACGGCATC
TCCCTGGCGCAGACCGCTGAAGGTGCCCTGCAGCAGTCCACCAATATCCTGCAGCGTATCCGCGACCTGGCC
CTGCAATCCGCCAACGGCTCCAACAGCGACGCCGACCGTGCCGCCCTGCAGAAAGAAGTTGCTGCGCAACAG
GCCGAACTGACCCGTATCTCCGATACCACCACCTTCGGTGGCCGCAAGCTGCTCGACGGCTCCTTCGGCACC
ACCAGCTTCCAGGTCGGTTCCAACGCCTACGAGACCATTGACATCAGCCTGCAGAATGCCTCTGCCAGCGCC
ATCGGTTCTTACCAGGTCGGCAGCAACGGCGCGGGTACCGTCGCCAGCGTAGCGGGCACCGCGACCGCTTCG
GGCATCGCCTCGGGCACCGTCAACCTGGTCGGTGGCGGTCAGGTGAAGAACATCGCCATCGCCGCCGGCGAT
AGCGCCAAGGCCATCGCCGAGAAGATGGACGGTGCCATCCCGAACCTGTCGGCTCGTGCCCGTACCGTGTTC
ACCGCTGATGTCAGCGGCGTGACCGGTGGTTCGCTGAACTTCGACGTAACCGTTGGCAGCAACACCGTGAGC
CTGGCAGGCGTGACCTCCACTCAGGATCTGGCCGACCAACTGAACTCCAACTCGTCGAAGCTGGGCATCACC
GCCAGCATCAACGACAAGGGTGTACTGACCATCACCTCCGCTACCGGCGAGAACGTCAAGTTCGGTGCGCAG
ACCGGTACCGCTACTGCCGGTCAGGTCGCAGTGAAGGTCCAGGGTTCCGATGGCAAGTTCGAAGCGGCCGCC
AAGAACGTGGTAGCTGCCGGTACTGCCGCTACCACCACCGTCGTGACCGGCTACGTGCAACTGAACTCGCCG
ACCGCCTACTCGGTCAGCGGTACCGGCACCCAGGCTTCGCAGGTCTTCGGCAACGCCAGCGCCGCGCAGAAG
AGCAGCGTTGCCAGCGTCGACATCTCCACTGCCGACGGCGCCCAGAACGCCATCGCGGTAGTCGATAACGCC
CTGGCTGCGATCGACGCCCAGCGTGCCGACCTCGGTGCTGTTCAGAACCGCTTCAAGAACACCATCGACAAC
CTGACCAACATCTCGGAAAACGCTACCAACGCTCGTAGCCGCATCAAGGACACCGACTTCGCTGCCGAAACC
GCGGCGCTGTCGAAGAACCAGGTGCTGCAACAGGCCGGTACCGCGATCCTGGCCCAGGCCAACCAGCTGCCG
CAGGCGGTCCTGAGCCTGCTGCGCTAA
Translation:
MALTVNTNIASLNTQRNLNASSNDLNTSLQRLTTGYRINSAKDDAAGLQISNRLSNQISGLNVATRNANDGI
SLAQTAEGALQQSTNILQRIRDLALQSANGSNSDADRAALQKEVAAQQAELTRISDTTTFGGRKLLDGSFGT
TSFQVGSNAYETIDISLQNASASAIGSYQVGSNGAGTVASVAGTATASGIASGTVNLVGGGQVKNIAIAAGD
SAKAIAEKMDGAIPNLSARARTVFTADVSGVTGGSLNFDVTVGSNTVSLAGVTSTQDLADQLNSNSSKLGIT
ASINDKGVLTITSATGENVKFGAQTGTATAGQVAVKVQGSDGKFEAAAKNVVAAGTAATTTVVTGYVQLNSP
TAYSVSGTGTQASQVFGNASAAQKSSVASVDISTADGAQNAIAVVDNALAAIDAQRADLGAVQNRFKNTIDN
LTNISENATNARSRIKDTDFAAETAALSKNQVLQQAGTAILAQANQLPQAVLSLLR*
AnnotationID:1038GeneID:1029
AnnotatorUID: danlee
Modification Date/Time: 2004-05-21 10:10:10
Gene Name:fliC
Confidence Code:1
GeneProduct:flagellin type B
Cell Localization:()
Synonyms:PA1092
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:flagellar filament protein 
Functional Category Confidence Code:5
COGs:pfam00669, COG1344
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00669, Flagellin_N, Bacterial flagellin N-terminus. Score: 131, 2e-31
COG1344, FlgL, Flagellin and related hook-associated proteins. Score: 125, 1e-29
COG1344, FlgL, Flagellin and related hook-associated proteins. Score: 83.2, 7e-17






   
Genomic Context:
fliC-fliD (Ecoli) 






   
Comment:


















    ReferenceID:2061




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19203




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1029
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1850
                           PA1092_tr
                           translation of PA1092
                           488
                           99.79
                           99.99
                           0
                           2344.0
     

     
     
64063
                           gb|AAG04481.1|AE004540_1
                           (AE004540) flagellin type B [Pseudomonas aeruginosa PAO1]
                           488
                           99.79
                           99.99
                           0
                           2344.0
     

     
     
64064
                           gb|AAA99807.1|
                           (U54775) flagellin [Pseudomonas aeruginosa]
                           488
                           99.38
                           99.79
                           0
                           2335.0
     

     
     
64065
                           gb|AAB69134.1|
                           (AF016230) flagellin [Pseudomonas aeruginosa]
                           488
                           88.72
                           88.93
                           54
                           2086.0
     

     
     
64066
                           gb|AAB69133.1|
                           (AF016229) flagellin [Pseudomonas aeruginosa]
                           488
                           88.72
                           88.93
                           54
                           2086.0
     

     






      

          
GC ORFID: 44031How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1092Glimmer Score: 

          
Start: 487035Stop: 488501

          
Length: 1467


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1092 translation of PA1092Homolog Bit Score 907.0

          
Other Homologs:  t_PA1092 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCTTACAGTCAACACGAACATTGCTTCCCTGAACACTCAGCGCAACCTGAATGCTTCTTCCAACGAC 
CTCAACACCTCGTTGCAGCGTCTGACCACCGGCTACCGCATCAACAGCGCCAaGGACGATGCTGCCGGCCTG 
CAGATCTCCAACCGCCTGTCCAACCAGATCAGCGGTCTGAACGTTGCCACCCGCAACGCCAACGACGGCATC 
TCCCTGGCGCAGACCGCTGAAGGTGCCCTGCAGCAGTCCACCAATATCCTGCAGCGTATCCGCGACCTGGCC 
CTGCAATCCGCCAACGGCTCCAACAGCGACGCCGACCGTGCCGCCCTGCAGAAAGAAGTTGCTGCGCAACAG 
GCCGAACTGACCCGTATCTCCGATACCACCACCTTCGGTGGCCGCAAGCTGCTCGACGGCTCCTTCGGCACC 
ACCAGCTTCCAGGTCGGTTCCAACGCCTACGAGACCATTGACATCAGCCTGCAGAATGCCTCTGCCAGCGCC 
ATCGGTTCTTACCAGGTCGGCAGCAACGGCGCGGGTACCGTCGCCAGCGTAGCGGGCACCGCGACCGCTTCG 
GGCATCGCCTCGGGCACCGTCAACCTGGTCGGTGGCGGTCAGGTGAAGAACATCGCCATCGCCGCCGGCGAT 
AGCGCCAAGGCCATCGCCGAGAAGATGGACGGTGCCATCCCGAACCTGTCGGCTCGTGCCCGTACCGTGTTC 
ACCGCTGATGTCAGCGGCGTGACCGGTGGTTCGCTGAACTTCGACGTAACCGTTGGCAGCAACACCGTGAGC 
CTGGCAGGCGTGACCTCCACTCAGGATCTGGCCGACCAACTGAACTCCAACTCGTCGAAGCTGGGCATCACC 
GCCAGCATCAACGACAAGGGTGTACTGACCATCACCTCCGCTACCGGCGAGAACGTCAAGTTCGGTGCGCAG 
ACCGGTACCGCTACTGCCGGTCAGGTCGCAGTGAAGGTCCAGGGTTCCGATGGCAAGTTCGAAGCGGCCGCC 
AAGAACGTGGTAGCTGCCGGTACTGCCGCTACCACCACCGTCGTGACCGGCTACGTGCAACTGAACTCGCCG 
ACCGCCTACTCGGTCAGCGGTACCGGCACCCAGGCTTCGCAGGTCTTCGGCAACGCCAGCGCCGCGCAGAAG 
AGCAGCGTTGCCAGCGTCGACATCTCCACTGCCGACGGCGCCCAGAACGCCATCGCGGTAGTCGATAACGCC 
CTGGCTGCGATCGACGCCCAGCGTGCCGACCTCGGTGCTGTTCAGAACCGCTTCAAGAACACCATCGACAAC 
CTGACCAACATCTCGGAAAACGCTACCAACGCTCGTAGCCGCATCAAGGACACCGACTTCGCTGCCGAAACC 
GCGGCGCTGTCGAAGAACCAGGTGCTGCAACAGGCCGGTACCGCGATCCTGGCCCAGGCCAACCAGCTGCCG 
CAGGCGGTCCTGAGCCTGCTGCGCTAA