ViewGene
Locus Name:
GeneID:
Location:

GeneID:1028
TrivialName: PA14_24780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24780
PAO1 Ortholog Locus:PA3039
Sequence Length:1383
Protein Length:460
Start: 2165841
Stop: 2167223
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06427.1|AE004729_1 (AE004729) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 457/460 (99%), Positives = 458/460 (99%)
Sequence:
ATGAAAATCAAGGAAAGTCCGAGAGCTTTCCATGCTGCCTCAGGCACCTTGCGAAACATCTGCCGAAGAAAA
GCAGCGGTTCGCACGACGACTACTGCTTCGTCATGGTGCGTTGAAGGGTGGGCGTGGGCGTTTCTGGTGCTT
TCTCTCTACGCGCGAAGGCTGCCTCAATCCATGGATAACCTGAATAGTGCGGTGCAAGTCCTGATCCACGGC
TCCAATACCCTGTTCATCCTGCTCGGAGCGGTGATGGTGCTGGCGATGCACGCCGGCTTCGCCTTCCTCGAG
GTGGGCACCGTGCGCCTGAAGAACCAGGTCAACGCCCTGTCGAAGATCCTGTCCGACTTCGCCATCTCGGCG
CTGGCCTATTTCTTCGTCGGCTACTGGATCGCCTACGGCGTGACCTTCTTCCACCCGGCAGCGGCGCTGACC
GTGGACAGTGGCTATGCGCTGGTGAAGTTCTTCTTCCTGCTGACCTTCGCCGCGGCAATCCCGGCGATCATC
TCCGGCGGCATCGCCGAGCGTGCCCGGTTCGGCCCGCAGTTGTGCGCCACGGCGCTGATCGTGGCCTTCGTG
TACCCGTTCTTCGAAGGCTTGGTGTGGAACGGCAATTTCGGCTTGCAGGAATGGCTGAAGTTGGAGTTCGGC
GCACCTTTCCACGATTTCGCCGGCTCCGTGGTGGTGCATGCGCTGGGCGGCTGGCTGGCATTGGCGGCGGTG
CTATTGCTGGGCAGCCGCAACGGCCGCTATCGCGACGGCAAGCTGGTGGCGATGGCGCCGTCGAGCATCCCG
TTCCTGGCACTGGGGTCGTGGATCCTGATCATCGGCTGGTTCGGCTTCAACGTGATGAGCGCCCAGACCCTC
GCTGGGGTCAGCGGGCTGGTGGCGGTCAACTCCTTGCTGGCGATGGTTGGCGGCACCATGGCGTCGCTGCTG
ATCGGCCGCAACGACCCGGGTTTCCTGCACAACGGTCCGCTGGCCGGGTTGGTGGCGGTGTGCGCCGGTTCC
GACCTGATGCATCCGATCGGCGCGCTGGCTACCGGCCTGGTGGCGGGGGCCCTGTTCGTCTGGGCGTTCACC
GCGACCCAGGTGCGCTGGAAGATCGACGACGTCCTCGGTGTCTGGCCGTTGCACGGTCTTTGCGGGGTCTGG
GGCGGGATTGCCTGCGGCATCTTTGGCCAGCAGGCATTGGGTGGGCTCGGCGGGGTGAGCCTGGCCAGCCAG
GCGCTCGGCAGCCTGCTGGGGGTGACGGTGGCTTTCGCCGGCGGCCTGTTGGTCTATGGGCTGATGAAGGCG
CTGCTGGGCATCCGCTTGAGCCAGGAGGAGGAGTACTACGGCGCGGACCTGTCGATCCACAAGATCGGCGCG
ATCAGCCACGAATGA
Translation:
MKIKESPRAFHAASGTLRNICRRKAAVRTTTTASSWCVEGWAWAFLVLSLYARRLPQSMDNLNSAVQVLIHG
SNTLFILLGAVMVLAMHAGFAFLEVGTVRLKNQVNALSKILSDFAISALAYFFVGYWIAYGVTFFHPAAALT
VDSGYALVKFFFLLTFAAAIPAIISGGIAERARFGPQLCATALIVAFVYPFFEGLVWNGNFGLQEWLKLEFG
APFHDFAGSVVVHALGGWLALAAVLLLGSRNGRYRDGKLVAMAPSSIPFLALGSWILIIGWFGFNVMSAQTL
AGVSGLVAVNSLLAMVGGTMASLLIGRNDPGFLHNGPLAGLVAVCAGSDLMHPIGALATGLVAGALFVWAFT
ATQVRWKIDDVLGVWPLHGLCGVWGGIACGIFGQQALGGLGGVSLASQALGSLLGVTVAFAGGLLVYGLMKA
LLGIRLSQEEEYYGADLSIHKIGAISHE*
AnnotationID:1037GeneID:1028
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative ammonium transporter
Cell Localization:()
Synonyms:PA3039
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00909
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67720.1|AE016403_5 (AE016781) ammonium transporter, putative [Pseudomonas putida
           KT2440]
          Length = 402

 Score =  689 bits (1779), Expect = 0.0
 Identities = 334/402 (83%), Positives = 366/402 (91%)

>dbj|BAC59786.1| (AP005078) putative ammonium transporter Amt [Vibrio
           parahaemolyticus]
          Length = 427

 Score =  576 bits (1485), Expect = e-164
 Identities = 276/401 (68%), Positives = 324/401 (80%)

>gb|AAO10948.1|AE016805_205 (AE016805) Ammonia permease [Vibrio vulnificus CMCP6]
          Length = 406

 Score =  571 bits (1471), Expect = e-162
 Identities = 276/406 (67%), Positives = 323/406 (79%)






 
Structural Features:
pfam00909, Ammonium_transp, Ammonium Transporter Family.
CD-Length = 395 residues,  98.5% aligned
Score =  235 bits (599), Expect = 9e-63
Identities = 158/403 (39%), Positives = 209/403 (51%), Gaps = 31/403 (7%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2059




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19201




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36011




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1028_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1028
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1849
                           PA3039_tr
                           translation of PA3039
                           460
                           99.34
                           99.56
                           0
                           2346.0
     

     
     
64056
                           gb|AAG06427.1|AE004729_1
                           (AE004729) probable transporter [Pseudomonas aeruginosa PAO1]
                           460
                           99.34
                           99.56
                           0
                           2346.0
     

     
     
64057
                           gb|AAN67720.1|AE016403_5
                           (AE016781) ammonium transporter, putative [Pseudomonas putida KT2440]
                           460
                           72.60
                           79.56
                           58
                           1779.0
     

     
     
64059
                           gb|AAO10948.1|AE016805_205
                           (AE016805) Ammonia permease [Vibrio vulnificus CMCP6]
                           460
                           60.00
                           70.21
                           54
                           1471.0
     

     
     
64060
                           dbj|BAC94456.1|
                           (AP005336) ammonia permease [Vibrio vulnificus YJ016]
                           460
                           59.78
                           70.00
                           54
                           1464.0
     

     






      

          
GC ORFID: 44030How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3039Glimmer Score: 

          
Start: 2788087Stop: 2786705

          
Length: 1383


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3039 translation of PA3039Homolog Bit Score 908.0

          
Other Homologs:  t_PA3039 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATCAAGGAAAGTCCGAGAGCTTTCCATGCTGCCTCAGGCACCTTGCGAAACATCTGCCGAAGAAAA 
GCAGCGGTTCGCACGACGACTACTGCTTCGTCATGGTGCGTTGAAGGGTGGGCGTGGGCGTTTCTGGTGCTT 
TCTCTCTACGCGCGAAGGCTGCCTCAATCCATGGATAACCTGAATAGTGCGGTGCAAGTCCTGATCCACGGC 
TCCAATACCCTGTTCATCCTGCTCGGAGCGGTGATGGTGCTGGCGATGCACGCCGGCTTCGCCTTCCTCGAG 
GTGGGCACCGTGCGCCTGAAGAACCAGGTCAACGCCCTGTCGAAGATCCTGTCCGACTTCGCCATCTCGGCG 
CTGGCCTATTTCTTCGTCGGCTACTGGATCGCCTACGGCGTGACCTTCTTCCACCCGGCAGCGGCGCTGACC 
GTGGACAGTGGCTATGCGCTGGTGAAGTTCTTCTTCCTGCTGACCTTCGCCGCGGCAATCCCGGCGATCATC 
TCCGGCGGCATCGCCGAGCGTGCCCGGTTCGGCCCGCAGTTGTGCGCCACGGCGCTGATCGTGGCCTTCGTG 
TACCCGTTCTTCGAAGGCTTGGTGTGGAACGGCAATTTCGGCTTGCAGGAATGGCTGAAGTTGGAGTTCGGC 
GCACCTTTCCACGATTTCGCCGGCTCCGTGGTGGTGCATGCGCTGGGCGGCTGGCTGGCATTGGCGGCGGTG 
CTATTGCTGGGCAGCCGCAACGGCCGCTATCGCGACGGCAAGCTGGTGGCGATGGCGCCGTCGAGCATCCCG 
TTCCTGGCACTGGGGTCGTGGATCCTGATCATCGGCTGGTTCGGCTTCAACGTGATGAGCGCCCAGACCCTC 
GCTGGGGTCAGCGGGCTGGTGGCGGTCAACTCCTTGCTGGCGATGGTTGGCGGCACCATGGCGTCGCTGCTG 
ATCGGCCGCAACGACCCGGGTTTCCTGCACAACGGTCCGCTGGCCGGGTTGGTGGCGGTGTGCGCCGGTTCC 
GACCTGATGCATCCGATCGGCGCGCTGGCTACCGGCCTGGTGGCGGGGGCCCTGTTCGTCTGGGCGTTCACC 
GCGACCCAGGTGCGCTGGAAGATCGACGACGTCCTCGGTGTCTGGCCGTTGCACGGTCTTTGCGGGGTCTGG 
GGCGGGATTGCCTGCGGCATCTTTGGCCAGCAGGCATTGGGTGGGCTCGGCGGGGTGAGCCTGGCCAGCCAG 
GCGCTCGGCAGCCTGCTGGGGGTGACGGTGGCTTTCGCCGGCGGCCTGTTGGTCTATGGGCTGATGAAGGCG 
CTGCTGGGCATCCGCTTGAGCCAGGAGGAGGAGTACTACGGCGCGGACCTGTCGATCCACAAGATCGGCGCG 
ATCAGCCACGAATGA