ViewGene
Locus Name:
GeneID:
Location:

GeneID:1027
TrivialName: PA14_25250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25250
PAO1 Ortholog Locus:PA3001
Sequence Length:1386
Protein Length:461
Start: 2208690
Stop: 2210075
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06389.1|AE004725_2 (AE004725) probable glyceraldehyde-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 459/461 (99%), Positives = 460/461 (99%)
Sequence:
ATGATCCCGCTGATTGGCCAGCTCTACCGCAATAACAATGTGGTGACCTCGATCCATGGCCGTGGTCTGATC
AACCGCTCGGTGATCGCGATCATGAAGGCGCATCGTTTCGCCCGTCATCGCATGGCTGATGACGCCGAGCTG
TCGGTTCACGAGACGTTCCCGATCCTCAAGGCGATGAGCGAGCTCAAGCTGGGCGCCGCTTCCGTCGATCTG
GGCAAGATGGTCGCCAAGTTCAAGGCAGAAGGTAACGGCCGCAGCATCGAGGACTTCGTCAAGGCCGAGCTG
GCCGAAGTGGCCGGCAAGCAGAACGGCGATGCCCGCGAAGGCACCGACGTCGTGCTCTACGGCTTCGGCCGC
ATCGGTCGCCTGCTGGCGCGTATCCTGATCGAGAAGACCGGCGGCGGCGACGGCCTGCGCCTGCGCGCGATC
GTCGTGCGCAAGGGCGCCGAGAACGACCTGGTCAAGCGGGCCAGCCTGCTGCGTCGGGACTCGGTGCATGGT
CCGTTCGACGGCACCATCACCATCGACGAAGAAAACAACACGCTGACCGCCAACGGCAACCTGATCCAGGTG
ATCTACTCCAACGACCCGGCGTCGATCGACTACACCCAGTACGGCATCAAGAACGCCCTGCTGGTCGACAAC
ACCGGCAAGTGGCGCGACGCCGAAGGCCTCGGCCAGCACCTGAAGTGCCCGGGGATCGATCGCGTGGTCCTT
ACCGCTCCGGGCAAGGGTGCGCTGAAGAACATCGTGCACGGTATCAACCACACCGACATCGGCGCCGACGAC
AAGATCATCTCGGCCGCCTCCTGCACCACCAACGCCATCGTGCCGGTGCTGAAGGCCGTCAACGACCAGTAC
GGCATCGTCAACGGTCACGTCGAGACCGTCCACTCGTACACCAACGACCAGAACCTGATCGACAACTTCCAC
AAGGGCAGTCGTCGTGGCCGCAGCGCGCCGCTGAACATGGTGATCACCAAGACCGGTGCCGCCACCGCCGCG
GCCAAGGCCCTGCCGGTGCTGAAAGGCAAGCTGACCGGCAATGCGATCCGCGTGCCGACGCCGAACGTGTCC
ATGGCGATCCTCAACCTGAACCTGGAAAAGGCCACCACCCGCGAAGAGATCAACGAGTACCTGCGCCAGATG
GCCATGCACTCGGACCTGCAGAAGCAGATCGACTTCGTCAGCTCCCAGGAAGTGGTTTCCACCGACTTCGTC
GGTTCGCGCCATGCCGGCGTGGTGGACGCCGAGGCGACCATCTGCAACGACAACCGTGTCGTCCTGTACGTG
TGGTACGACAACGAGTTCGGCTACAGCTGCCAGGTAGTGCGCGTGATGGAAGACATGGCTGGGGTCAACCCG
CCGGCCTTCCCGCGTTGA
Translation:
MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDL
GKMVAKFKAEGNGRSIEDFVKAELAEVAGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAI
VVRKGAENDLVKRASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDN
TGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQY
GIVNGHVETVHSYTNDQNLIDNFHKGSRRGRSAPLNMVITKTGAATAAAKALPVLKGKLTGNAIRVPTPNVS
MAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEATICNDNRVVLYV
WYDNEFGYSCQVVRVMEDMAGVNPPAFPR*
AnnotationID:1036GeneID:1027
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 17:05:25
Gene Name:
Confidence Code:3
GeneProduct:putative glyceraldehyde 3-phosphate dehydrogenase
Cell Localization:()
Synonyms:gapA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0057,pfam02800
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67762.1|AE016407_6 (AE016782) glyceraldehyde 3-phosphate dehydrogenase [Pseudomonas
           putida KT2440]
          Length = 487

 Score =  820 bits (2118), Expect = 0.0
 Identities = 407/461 (88%), Positives = 434/461 (94%)

>gb|AAO55620.1| (AE016863) glyceraldehyde 3-phosphate dehydrogenase, type I
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 482

 Score =  794 bits (2051), Expect = 0.0
 Identities = 398/461 (86%), Positives = 426/461 (92%)

>emb|CAC01538.1| (AL939130) glyceraldehyde-3-phosphate dehydrogenase [Streptomyces
           coelicolor A3(2)]
          Length = 481

 Score =  587 bits (1513), Expect = e-167
 Identities = 281/460 (61%), Positives = 366/460 (79%), Gaps = 3/460 (0%)








 
Structural Features:
COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/
erythrose-4-phosphate dehydrogenase 
[Carbohydrate transport and metabolism]
CD-Length = 335 residues,  98.5% aligned
Score =  350 bits (899), Expect = 3e-97
Identities = 148/343 (43%), Positives = 205/343 (59%), Gaps = 14/343 (4%)

pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, 
C-terminal domain.
CD-Length = 162 residues, 100.0% aligned
Score =  174 bits (444), Expect = 2e-44
Identities = 81/164 (49%), Positives = 102/164 (62%), Gaps = 4/164 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2057




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19199




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36046




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1027_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1027
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1848
                           PA3001_tr
                           translation of PA3001
                           461
                           99.56
                           99.78
                           0
                           2347.0
     

     
     
63938
                           gb|AAG06389.1|AE004725_2
                           (AE004725) probable glyceraldehyde-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
                           461
                           99.56
                           99.78
                           0
                           2347.0
     

     
     
63939
                           gb|AAN67762.1|AE016407_6
                           (AE016782) glyceraldehyde 3-phosphate dehydrogenase [Pseudomonas putida KT2440]
                           487
                           83.57
                           89.11
                           26
                           2118.0
     

     
     
63940
                           gb|AAO55620.1|
                           (AE016863) glyceraldehyde 3-phosphate dehydrogenase, type I [Pseudomonas syringae pv. tomato str. DC3000]
                           482
                           82.57
                           88.38
                           21
                           2051.0
     

     
     
63941
                           dbj|BAC17818.1|
                           (AP005217) putative glyceraldehyde 3-phosphate dehydrogenase [Corynebacterium efficiens YS-314]
                           485
                           60.82
                           75.67
                           29
                           1539.0
     

     






      

          
GC ORFID: 44029How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3001Glimmer Score: 

          
Start: 2745236Stop: 2743851

          
Length: 1386


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3001 translation of PA3001Homolog Bit Score 908.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene893 (ORF: BLASTX 847.0), t_PA3001 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCCGCTGATTGGCCAGCTCTACCGCAATAACAATGTGGTGACCTCGATCCATGGCCGTGGTCTGATC 
AACCGCTCGGTGATCGCGATCATGAAGGCGCATCGTTTCGCCCGTCATCGCATGGCTGATGACGCCGAGCTG 
TCGGTTCACGAGACGTTCCCGATCCTCAAGGCGATGAGCGAGCTCAAGCTGGGCGCCGCTTCCGTCGATCTG 
GGCAAGATGGTCGCCAAGTTCAAGGCAGAAGGTAACGGCCGCAGCATCGAGGACTTCGTCAAGGCCGAGCTG 
GCCGAAGTGGCCGGCAAGCAGAACGGCGATGCCCGCGAAGGCACCGACGTCGTGCTCTACGGCTTCGGCCGC 
ATCGGTCGCCTGCTGGCGCGTATCCTGATCGAGAAGACCGGCGGCGGCGACGGCCTGCGCCTGCGCGCGATC 
GTCGTGCGCAAGGGCGCCGAGAACGACCTGGTCAAGCGGGCCAGCCTGCTGCGTCGGGACTCGGTGCATGGT 
CCGTTCGACGGCACCATCACCATCGACGAAGAAAACAACACGCTGACCGCCAACGGCAACCTGATCCAGGTG 
ATCTACTCCAACGACCCGGCGTCGATCGACTACACCCAGTACGGCATCAAGAACGCCCTGCTGGTCGACAAC 
ACCGGCAAGTGGCGCGACGCCGAAGGCCTCGGCCAGCACCTGAAGTGCCCGGGGATCGATCGCGTGGTCCTT 
ACCGCTCCGGGCAAGGGTGCGCTGAAGAACATCGTGCACGGTATCAACCACACCGACATCGGCGCCGACGAC 
AAGATCATCTCGGCCGCCTCCTGCACCACCAACGCCATCGTGCCGGTGCTGAAGGCCGTCAACGACCAGTAC 
GGCATCGTCAACGGTCACGTCGAGACCGTCCACTCGTACACCAACGACCAGAACCTGATCGACAACTTCCAC 
AAGGGCAGTCGTCGTGGCCGCAGCGCGCCGCTGAACATGGTGATCACCAAGACCGGTGCCGCCACCGCCGCG 
GCCAAGGCCCTGCCGGTGCTGAAAGGCAAGCTGACCGGCAATGCGATCCGCGTGCCGACGCCGAACGTGTCC 
ATGGCGATCCTCAACCTGAACCTGGAAAAGGCCACCACCCGCGAAGAGATCAACGAGTACCTGCGCCAGATG 
GCCATGCACTCGGACCTGCAGAAGCAGATCGACTTCGTCAGCTCCCAGGAAGTGGTTTCCACCGACTTCGTC 
GGTTCGCGCCATGCCGGCGTGGTGGACGCCGAGGCGACCATCTGCAACGACAACCGTGTCGTCCTGTACGTG 
TGGTACGACAACGAGTTCGGCTACAGCTGCCAGGTAGTGCGCGTGATGGAAGACATGGCTGGGGTCAACCCG 
CCGGCCTTCCCGCGTTGA