ViewGene

Locus Name:
GeneID:
Location:

GeneID:1026
TrivialName: PA14_48570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48570
PAO1 Ortholog Locus:PA1217
Sequence Length:1368
Protein Length:455
Start: 4318823
Stop: 4320190
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04606.1|AE004551_10 (AE004551) probable 2-isopropylmalate synthase [Pseudomonas aeruginosa PAO1]
Identities = 455/455 (100%), Positives = 455/455 (100%)
Sequence:
ATGATCCGGGTCATCGACTGCACCCTGCGCGAGGGGTGCCAGGCCCGCCAGTGCAGCTTCGACAGCGCGCAG
TCGGTCCAGCTGGCACGGGAAATCGCGGCGCTGGGGGTGGATATGATCGAGTGCGGCCACCCGCGGATTTCC
GCGGACGAACGCGAGCGGGTACGCGCCGTGGTGGCGGCGGTTTCCACGCCGGTGCTGGCCCACGCCCGGGCG
CGCCGGGAGGATATCGACGCGGTGCTGGAAACCGGTGCCCAGTGGGTCGGGCTGTTCGCCTCGATCAACGCG
ATCTCGCTGGAAACCAAGTTCAAGGGCATGAACCGCGAGGAGGTGCTCGAACTGTTCCACGACGCGATCCGC
TACGCCCGCGAACGCGGCCTGCGGGTCCGGGCCACGGTGGAAGACGCCGCGCGCACCTCGGTCAGCGACCTG
GTCAGCATGATCGCCACCGCGCGCGACGCCGGCGCCGATCGCATCTGCTTCGCCGACAGCGTGGGCATCCTG
CTGCCGGACGAGACCTTCGACGTGCTCTCTCTGCTGCGCCACGAGTTCCCCGACGTGGTCTTCGAGTACCAC
GTGCACAACGACCGCGGCCTGGCCCTGGGCAACACCCTGGCGGCGATCCAGGCCGGGGTCCAGTGGCACTCG
GCGAGCTGCAACGGGATCGGCGAACGCGCCGGGATCACCGATACCTTCCAGTTGCTGACCCTGCTGCACACC
AAGTTCGCCGCCGACCGCTTCAACCTGAAGAACGTCCTCGCGGTCTCCGAACTGGTCGAGGCGCACAGCCGG
ATCAAGCGTTCGCCGATGCACCCGGTGGTCGGCGAGAACGCCTTCGTCCATGTCGCCCGCCTGCACCAGCTG
GCCATGCAGGAAAACCAGGACGCCTACAGCGCCTTCGATCCGGAACTGATCAACGGCCGCGTCTCGCTGCAA
CGCTACACGCCGATGCACCGCCAATCCCTGTTCCTCACGCCTTTCGAGAAGTCCGCCAGCGAACTGAAGTAC
CACCGCCACGGCCCCGGCAAGCGCTTCGTCATGCTCGACCGGCGCCTGCTCGACGGCTCGCCGTTCTACTTC
ATCGCCCGCCAGTTCCACGACGTCGGCGACGGCGGGCCGGGCCACGTCGACAGCCACGTACACAACTGCGAC
TCGGTGTTCCTGTTCCTCGGCAGCGACGAGGACTACCGCGGCCTGGAGGTGGAAGTCCTGCTAGGCGGCCAG
CTGCGCCGTTTGCAGAGCCCGGCCAGCGTGTTCATCCCCGCCGGCGTCGAGCACAGCTACCGCTACCTCGGC
GGCAGCGGCACCTACATCAATTTCGTCCACAAGGGCGATTACCACGAGAGCCTACTGGAGATTACCCAATGA
Translation:
MIRVIDCTLREGCQARQCSFDSAQSVQLAREIAALGVDMIECGHPRISADERERVRAVVAAVSTPVLAHARA
RREDIDAVLETGAQWVGLFASINAISLETKFKGMNREEVLELFHDAIRYARERGLRVRATVEDAARTSVSDL
VSMIATARDAGADRICFADSVGILLPDETFDVLSLLRHEFPDVVFEYHVHNDRGLALGNTLAAIQAGVQWHS
ASCNGIGERAGITDTFQLLTLLHTKFAADRFNLKNVLAVSELVEAHSRIKRSPMHPVVGENAFVHVARLHQL
AMQENQDAYSAFDPELINGRVSLQRYTPMHRQSLFLTPFEKSASELKYHRHGPGKRFVMLDRRLLDGSPFYF
IARQFHDVGDGGPGHVDSHVHNCDSVFLFLGSDEDYRGLEVEVLLGGQLRRLQSPASVFIPAGVEHSYRYLG
GSGTYINFVHKGDYHESLLEITQ*
AnnotationID:1035GeneID:1026
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 06:06:28
Gene Name:
Confidence Code:3
GeneProduct:putative 2-isopropylmalate synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0119,pfam00682
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAK41252.1| (AE006717) 2-isopropylmalate synthase (leuA-2) [Sulfolobus
           solfataricus]
          Length = 461

 Score =  213 bits (543), Expect = 2e-54
 Identities = 119/325 (36%), Positives = 182/325 (56%), Gaps = 10/325 (3%)

>dbj|BAA30841.1| (AP000007) 361aa long hypothetical 2-isopropylmalate synthase
           [Pyrococcus horikoshii]
          Length = 361

 Score =  183 bits (464), Expect = 2e-45
 Identities = 107/306 (34%), Positives = 169/306 (55%), Gaps = 5/306 (1%)
Structural Features:
COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases 
[Amino acid transport and metabolism]
CD-Length = 409 residues,  99.8% aligned
Score =  287 bits (735), Expect = 2e-78
Identities = 127/415 (30%), Positives = 195/415 (46%), Gaps = 17/415 (4%)

pfam00682, HMGL-like, HMGL-like.
CD-Length = 260 residues,  98.1% aligned
Score =  185 bits (472), Expect = 8e-48
Identities = 90/256 (35%), Positives = 142/256 (55%), Gaps = 6/256 (2%)
Genomic Context:
Comment:
ReferenceID:2055
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19197
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37569
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1026_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1026

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1847 PA1217_tr translation of PA1217 455 99.99 99.99 0 2346.0
63937 gb|AAG04606.1|AE004551_10 (AE004551) probable 2-isopropylmalate synthase [Pseudomonas aeruginosa PAO1] 455 99.99 99.99 0 2346.0
GC ORFID: 44028How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1217Glimmer Score:
Start: 635085Stop: 633718
Length: 1368
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1217 translation of PA1217Homolog Bit Score 908.0
Other Homologs: t_PA1217 (ORF: GLIMMER)
GC ORF Sequence
ATGATCCGGGTCATCGACTGCACCCTGCGCGAGGGGTGCCAGGCCCGCCAGTGCAGCTTCGACAGCGCGCAG
TCGGTCCAGCTGGCACGGGAAATCGCGGCGCTGGGGGTGGATATGATCGAGTGCGGCCACCCGCGGATTTCC
GCGGACGAACGCGAGCGGGTACGCGCCGTGGTGGCGGCGGTTTCCACGCCGGTGCTGGCCCACGCCCGGGCG
CGCCGGGAGGATATCGACGCGGTGCTGGAAACCGGTGCCCAGTGGGTCGGGCTGTTCGCCTCGATCAACGCG
ATCTCGCTGGAAACCAAGTTCAAGGGCATGAACCGCGAGGAGGTGCTCGAACTGTTCCACGACGCGATCCGC
TACGCCCGCGAACGCGGCCTGCGGGTCCGGGCCACGGTGGAAGACGCCGCGCGCACCTCGGTCAGCGACCTG
GTCAGCATGATCGCCACCGCGCGCGACGCCGGCGCCGATCGCATCTGCTTCGCCGACAGCGTGGGCATCCTG
CTGCCGGACGAGACCTTCGACGTGCTCTCTCTGCTGCGCCACGAGTTCCCCGACGTGGTCTTCGAGTACCAC
GTGCACAACGACCGCGGCCTGGCCCTGGGCAACACCCTGGCGGCGATCCAGGCCGGGGTCCAGTGGCACTCG
GCGAGCTGCAACGGGATCGGCGAACGCGCCGGGATCACCGATACCTTCCAGTTGCTGACCCTGCTGCACACC
AAGTTCGCCGCCGACCGCTTCAACCTGAAGAACGTCCTCGCGGTCTCCGAACTGGTCGAGGCGCACAGCCGG
ATCAAGCGTTCGCCGATGCACCCGGTGGTCGGCGAGAACGCCTTCGTCCATGTCGCCCGCCTGCACCAGCTG
GCCATGCAGGAAAACCAGGACGCCTACAGCGCCTTCGATCCGGAACTGATCAACGGCCGCGTCTCGCTGCAA
CGCTACACGCCGATGCACCGCCAATCCCTGTTCCTCACGCCTTTCGAGAAGTCCGCCAGCGAACTGAAGTAC
CACCGCCACGGCCCCGGCAAGCGCTTCGTCATGCTCGACCGGCGCCTGCTCGACGGCTCGCCGTTCTACTTC
ATCGCCCGCCAGTTCCACGACGTCGGCGACGGCGGGCCGGGCCACGTCGACAGCCACGTACACAACTGCGAC
TCGGTGTTCCTGTTCCTCGGCAGCGACGAGGACTACCGCGGCCTGGAGGTGGAAGTCCTGCTAGGCGGCCAG
CTGCGCCGTTTGCAGAGCCCGGCCAGCGTGTTCATCCCCGCCGGCGTCGAGCACAGCTACCGCTACCTCGGC
GGCAGCGGCACCTACATCAATTTCGTCCACAAGGGCGATTACCACGAGAGCCTACTGGAGATTACCCAATGA