ViewGene
Locus Name:
GeneID:
Location:

GeneID:1024
TrivialName: PA14_24730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24730
PAO1 Ortholog Locus:PA3043
Sequence Length:1332
Protein Length:443
Start: 2164378
Stop: 2163047
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06431.1|AE004729_5 (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 443/443 (100%), Positives = 443/443 (100%)
Sequence:
ATGGACTGGCAGACCCTGCTCACCCGCGAACGGCTCGGAAAGCCGGTACACAGCAACGATGAACTGGGCCGC
AGCGCCTTCCACAAGGACCATGACCGGATCATCTTCTCCGGCGCGTTTCGCCGCCTCGGACGCAAGACCCAG
GTCCATCCGGTCTCCAGCAACGATCACATCCACACCCGCCTGACCCACTCCCTGGAAGTCGCCTGCGTCGGC
CGCTCGCTGGGCATGCGGGTCGGCGAGATCCTCCGCGAGGAACTACCCGAGTGGTGCGACCCCAGCGACCTC
GGGGTCATCGTCCAGTCGGCCTGCCTGGCCCACGACATCGGCAACCCACCGTTCGGGCACTCCGGCGAAGAC
GCGATCCGCAACTGGTTCCAGCAAGCCGCCGGACGTGGCTGGCTGGACGAGATGAGCGACGCCGAGCGTTCC
GACTTTCTCCACTTCGAAGGCAACGCCCAGGGCTTCCGGGTCCTCACCCAACTGGAATACCACCAGTTCGAC
GGCGGCACGCGGTTGACCTACGCCACCCTGGGCACCTACCTGAAGTACCCCTGGACCTCGCGCCACGCCGAA
GCGCTGGGCTACAAGAAGCACAAGTTCGGCTGCTACCAGAGCGAACTGCCGCTGCTCGAGCAGATCACCCAT
AAGCTCGGCATGCCGCAACTCGACGACGAGCGCTGGGCTCGTCATCCGCTGGTCTACCTGATGGAAGCGGCG
GACGACATCTGCTACGGCCTGATCGACCTCGAAGACGGCCTGGAAATGGAGCTGCTCGAATACAGCGAGGTC
GAGGCGCTGTTGCTCGGCCTGGTCGGCGACGACCTGCCCGACACCTATCGCCAACTCGGCCCCAGGGACTCC
CGCCGGCGCAAGCTGGCGATCCTCCGCGGCAAGGCCATCGAGCACCTGACCAATGCCGCCGCCCGTGCCTTC
GTCGACCAGCAGCAGGCCCTGCTCGCCGGGCAGCTTGCCGGCGACCTGGTGGAACACATGCACGGCCCGGCC
AAGCTCTGCGTGCAACGGGCCAAGGCCATCGCGCGGGAAAAGATCTTCCAGGACAAGCGCAAGACCCTCCAC
GAGATCGGCGCCTACACCACTCTGGAGATCCTCCTCAACGCCTTCTGTGGCGCCGCGCTGGAGCAATACGGC
GGGCATACGCCGTCGTTCAAGAACCGGCGCATCCTCGACCTGCTCGGACGCAACGCGCCCGACCCGCAGTGG
CCGCTGTACCGCGCCTTTCTCCAGGTGATCGATTTCATCGCCGGCATGACCGACAGCTACGCCACGGAAATG
GCCCGGGAAATGACCGGACGCTCGAGCCCCTCCTGA
Translation:
MDWQTLLTRERLGKPVHSNDELGRSAFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVACVG
RSLGMRVGEILREELPEWCDPSDLGVIVQSACLAHDIGNPPFGHSGEDAIRNWFQQAAGRGWLDEMSDAERS
DFLHFEGNAQGFRVLTQLEYHQFDGGTRLTYATLGTYLKYPWTSRHAEALGYKKHKFGCYQSELPLLEQITH
KLGMPQLDDERWARHPLVYLMEAADDICYGLIDLEDGLEMELLEYSEVEALLLGLVGDDLPDTYRQLGPRDS
RRRKLAILRGKAIEHLTNAAARAFVDQQQALLAGQLAGDLVEHMHGPAKLCVQRAKAIAREKIFQDKRKTLH
EIGAYTTLEILLNAFCGAALEQYGGHTPSFKNRRILDLLGRNAPDPQWPLYRAFLQVIDFIAGMTDSYATEM
AREMTGRSSPS*
AnnotationID:1033GeneID:1024
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 07:07:22
Gene Name:
Confidence Code:3
GeneProduct:putative deoxyguanosinetriphosphate triphosphohydrolase
Cell Localization:()
Synonyms:PA3043
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative dGTP triphosphohydrolase
Functional Category Confidence Code:5
COGs:COG0232
Secondary Functional Category(ies):Nucleotide transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67716.1|AE016403_1 (AE016781) deoxyguanosinetriphosphate triphosphohydrolase, putative
           [Pseudomonas putida KT2440]
          Length = 443

 Score =  796 bits (2057), Expect = 0.0
 Identities = 384/443 (86%), Positives = 416/443 (93%)

>gb|AAO55843.1| (AE016864) deoxyguanosinetriphosphate triphosphohydrolase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 443

 Score =  790 bits (2040), Expect = 0.0
 Identities = 378/440 (85%), Positives = 412/440 (93%)








 
Structural Features:
COG0232, Dgt, dGTP triphosphohydrolase [Nucleotide transport and metabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:2051




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19193




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36008




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1024_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1024
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1844
                           PA3043_tr
                           translation of PA3043
                           443
                           99.99
                           99.99
                           0
                           2350.0
     

     
     
63886
                           gb|AAG06431.1|AE004729_5
                           (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           443
                           99.99
                           99.99
                           0
                           2350.0
     

     
     
63887
                           gb|AAN67716.1|AE016403_1
                           (AE016781) deoxyguanosinetriphosphate triphosphohydrolase, putative [Pseudomonas putida KT2440]
                           443
                           86.68
                           93.90
                           0
                           2057.0
     

     
     
63888
                           gb|AAO55843.1|
                           (AE016864) deoxyguanosinetriphosphate triphosphohydrolase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           443
                           85.32
                           93.00
                           0
                           2036.0
     

     
     
63890
                           emb|CAE11052.1|
                           (BX571662) conserved hypothetical protein [Wolinella succinogenes]
                           457
                           41.35
                           59.29
                           40
                           830.0
     

     






      

          
GC ORFID: 44026How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3043Glimmer Score: 

          
Start: 2789550Stop: 2790881

          
Length: 1332


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3043 translation of PA3043Homolog Bit Score 909.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene349 (ORF: BLASTX 795.0), t_PA3043 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACTGGCAGACCCTGCTCACCCGCGAACGGCTCGGAAAGCCGGTACACAGCAACGATGAACTGGGCCGC 
AGCGCCTTCCACAAGGACCATGACCGGATCATCTTCTCCGGCGCGTTTCGCCGCCTCGGACGCAAGACCCAG 
GTCCATCCGGTCTCCAGCAACGATCACATCCACACCCGCCTGACCCACTCCCTGGAAGTCGCCTGCGTCGGC 
CGCTCGCTGGGCATGCGGGTCGGCGAGATCCTCCGCGAGGAACTACCCGAGTGGTGCGACCCCAGCGACCTC 
GGGGTCATCGTCCAGTCGGCCTGCCTGGCCCACGACATCGGCAACCCACCGTTCGGGCACTCCGGCGAAGAC 
GCGATCCGCAACTGGTTCCAGCAAGCCGCCGGACGTGGCTGGCTGGACGAGATGAGCGACGCCGAGCGTTCC 
GACTTTCTCCACTTCGAAGGCAACGCCCAGGGCTTCCGGGTCCTCACCCAACTGGAATACCACCAGTTCGAC 
GGCGGCACGCGGTTGACCTACGCCACCCTGGGCACCTACCTGAAGTACCCCTGGACCTCGCGCCACGCCGAA 
GCGCTGGGCTACAAGAAGCACAAGTTCGGCTGCTACCAGAGCGAACTGCCGCTGCTCGAGCAGATCACCCAT 
AAGCTCGGCATGCCGCAACTCGACGACGAGCGCTGGGCTCGTCATCCGCTGGTCTACCTGATGGAAGCGGCG 
GACGACATCTGCTACGGCCTGATCGACCTCGAAGACGGCCTGGAAATGGAGCTGCTCGAATACAGCGAGGTC 
GAGGCGCTGTTGCTCGGCCTGGTCGGCGACGACCTGCCCGACACCTATCGCCAACTCGGCCCCAGGGACTCC 
CGCCGGCGCAAGCTGGCGATCCTCCGCGGCAAGGCCATCGAGCACCTGACCAATGCCGCCGCCCGTGCCTTC 
GTCGACCAGCAGCAGGCCCTGCTCGCCGGGCAGCTTGCCGGCGACCTGGTGGAACACATGCACGGCCCGGCC 
AAGCTCTGCGTGCAACGGGCCAAGGCCATCGCGCGGGAAAAGATCTTCCAGGACAAGCGCAAGACCCTCCAC 
GAGATCGGCGCCTACACCACTCTGGAGATCCTCCTCAACGCCTTCTGTGGCGCCGCGCTGGAGCAATACGGC 
GGGCATACGCCGTCGTTCAAGAACCGGCGCATCCTCGACCTGCTCGGACGCAACGCGCCCGACCCGCAGTGG 
CCGCTGTACCGCGCCTTTCTCCAGGTGATCGATTTCATCGCCGGCATGACCGACAGCTACGCCACGGAAATG 
GCCCGGGAAATGACCGGACGCTCGAGCCCCTCCTGA