ViewGene
Locus Name:
GeneID:
Location:

GeneID:1023
TrivialName: PA14_30840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30840
PAO1 Ortholog Locus:PA2571
Sequence Length:1413
Protein Length:470
Start: 2676132
Stop: 2677544
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05959.1|AE004685_5 (AE004685) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 464/470 (98%), Positives = 466/470 (99%)
Sequence:
ATGCACGCGGCGACAGGGCGAGCGGAGGTGCGGATCATGGAGGCGTTACCCATCAGGAACCGGCGCTTGCTG
GTGATCGATGAGCGGCAGGCGGATCGAGACCGTGTATGCGGGTTGTTGCAGGGAACCCTAGAGGCCGAATCG
CCTCCCGTGGCGCCTGAGCGGGGCTACCAGGTGGATACGGCGGGAAGCGCCGAGGAGGCCTTGGGGCGGATA
CGCTCGGCCCTCCAGGCCGATGCGCCGTATGCCGTGGTGTTTCTCGGGATGTCGTCGGTAGGCGCGGATATT
CCCGTTCTCGAGCGGTTCTGGCGTCTCGACTCCCGCTTGCAGGTCGTGGTGCATGCGCCTCCCGCCGATTTT
CCGCTATTGGCGCCGTGGGCCGCGGAAGAGCGCCTGCTGCTCCTCGGCCTGCCTTTGCAGGGACAGGAGGTC
CGCCAGATGGCCGGCAATCTCAGCGCCAAGTGGAACGTGACGGCTCACCTCCAATTGCAGATGAGCCGGATG
GAGGCTGCCATCCAGGAGATCACCCAGGAAGTCGGCCAGGCCAAGGAGGCGCTGGAGAAAGAGATCGGCGAG
CGCAAGGAGCTGGAAAGCCAACTGGTGCAGACGGAGAAGCTTGCCTCGATCGGCCACCTGGCCGCCGGCGTC
GCCCATGAGATCAATAACCCCATCAGCTACGTTTCCTCCAACTACACCACCCTGGAGGAGCACGTCAGGCGT
TTGCTGGAGGTACTTGAAGCCTATGAAGAGGCTCGCCCCGCGATCCGCGACGAGGCGCTGGCAAGACGCCTG
GAGCAGCTCGGCGAGCGGGTCGAACTGGCCTTCGTCAAGGAGGATGTCGCTGTGTTGCTGCGCGAATCCAGG
GAGGGAATAGGGCGGGTGCGCAAGATCGTCCAGGACCTGAAGAACTTCTCCCGCGTCGACGCCGAGGACGAC
TGGCAGTGGACCGATCTGCACCAGGGGATCGAGTCGACCCTCAATATCGTCGCCAGCGAACTGAAGTACCGG
GCCGACGTGGTCCGCGAATACGGCGATCTGCCCGAGGTGAAGTGCCTGCCGTCGCAGATCAACCAGGTGGTG
ATGAACCTGGTGATGAACGCGGCCCAGGCGATGGGGCCTGAGCGGGGTCGCATCGTGATTCGCACGGGGCAT
ACCCTGGAGCATGCCTGGATCGAGGTGGAAGACTCGGGGCAGGGCATCTCCCCCGAGATCCTGCCGCGCATC
TTCGATCCGTTCTTCACCACCAAGCCGGTAGGCAAGGGGACCGGCCTGGGGTTGTCGCTCTCCTACGGCATC
GTCCAGAAACACGGCGGCACCATCGAGGTACGCAGCCAGCCGGGAGTCGGCAGCGCTTTCCGGATCGTGCTT
CCCCTGGAATCGCCTGGCAACCTGGGGGGAGCCCACGGAAATTAA
Translation:
MHAATGRAEVRIMEALPIRNRRLLVIDERQADRDRVCGLLQGTLEAESPPVAPERGYQVDTAGSAEEALGRI
RSALQADAPYAVVFLGMSSVGADIPVLERFWRLDSRLQVVVHAPPADFPLLAPWAAEERLLLLGLPLQGQEV
RQMAGNLSAKWNVTAHLQLQMSRMEAAIQEITQEVGQAKEALEKEIGERKELESQLVQTEKLASIGHLAAGV
AHEINNPISYVSSNYTTLEEHVRRLLEVLEAYEEARPAIRDEALARRLEQLGERVELAFVKEDVAVLLRESR
EGIGRVRKIVQDLKNFSRVDAEDDWQWTDLHQGIESTLNIVASELKYRADVVREYGDLPEVKCLPSQINQVV
MNLVMNAAQAMGPERGRIVIRTGHTLEHAWIEVEDSGQGISPEILPRIFDPFFTTKPVGKGTGLGLSLSYGI
VQKHGGTIEVRSQPGVGSAFRIVLPLESPGNLGGAHGN*
AnnotationID:1032GeneID:1023
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:17
Gene Name:
Confidence Code:3
GeneProduct:putative signal transduction histidine kinase
Cell Localization:()
Synonyms:PA2571
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642,smart00387,cd00075
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68553.1|AE016487_7 (AE016785) sensor histidine kinase/response regulator [Pseudomonas
           putida KT2440]
          Length = 505

 Score =  429 bits (1103), Expect = e-119
 Identities = 236/467 (50%), Positives = 311/467 (66%), Gaps = 27/467 (5%)

>gb|AAM41246.1| (AE012299) histidine kinase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 408

 Score =  299 bits (766), Expect = 2e-80
 Identities = 150/290 (51%), Positives = 206/290 (71%), Gaps = 2/290 (0%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 336 residues,  99.4% aligned
Score =  131 bits (329), Expect = 2e-31
Identities = 93/374 (24%), Positives = 145/374 (38%), Gaps = 45/374 (12%)

smart00387, HATPase_c, Histidine kinase-like ATPase
CD-Length = 112 residues,  97.3% aligned
Score =  109 bits (274), Expect = 6e-25
Identities = 51/110 (46%), Positives = 66/110 (60%), Gaps = 4/110 (3%)

cd00075, HATPase_c, Histidine kinase-like ATPase
CD-Length = 103 residues, 100.0% aligned
Score =  103 bits (257), Expect = 7e-23
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 2/103 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2049




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19191




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33139




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1023_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1023
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1842
                           PA2571_tr
                           translation of PA2571
                           470
                           98.72
                           99.14
                           0
                           2348.0
     

     
     
63873
                           gb|AAG05959.1|AE004685_5
                           (AE004685) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           470
                           98.72
                           99.14
                           0
                           2348.0
     

     
     
63874
                           gb|AAN68553.1|AE016487_7
                           (AE016785) sensor histidine kinase/response regulator [Pseudomonas putida KT2440]
                           520
                           46.15
                           61.15
                           65
                           1114.0
     

     
     
63875
                           gb|AAF70458.1|AF229814_1
                           (AF229814) putative histidine kinase [Pseudomonas aeruginosa]
                           470
                           37.65
                           38.08
                           290
                           928.0
     

     
     
63876
                           gb|AAM41246.1|
                           (AE012299) histidine kinase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           518
                           33.97
                           47.10
                           158
                           751.0
     

     






      

          
GC ORFID: 44025How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2571Glimmer Score: 

          
Start: 2277794Stop: 2276382

          
Length: 1413


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2571 translation of PA2571Homolog Bit Score 909.0

          
Other Homologs:  t_PA2882 (ORF: BLASTX 219.0), t_PA2571 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGCGGCGACAGGGCGAGCGGAGGTGCGGATCATGGAGGCGTTACCCATCAGGAACCGGCGCTTGCTG 
GTGATCGATGAGCGGCAGGCGGATCGAGACCGTGTATGCGGGTTGTTGCAGGGAACCCTAGAGGCCGAATCG 
CCTCCCGTGGCGCCTGAGCGGGGCTACCAGGTGGATACGGCGGGAAGCGCCGAGGAGGCCTTGGGGCGGATA 
CGCTCGGCCCTCCAGGCCGATGCGCCGTATGCCGTGGTGTTTCTCGGGATGTCGTCGGTAGGCGCGGATATT 
CCCGTTCTCGAGCGGTTCTGGCGTCTCGACTCCCGCTTGCAGGTCGTGGTGCATGCGCCTCCCGCCGATTTT 
CCGCTATTGGCGCCGTGGGCCGCGGAAGAGCGCCTGCTGCTCCTCGGCCTGCCTTTGCAGGGACAGGAGGTC 
CGCCAGATGGCCGGCAATCTCAGCGCCAAGTGGAACGTGACGGCTCACCTCCAATTGCAGATGAGCCGGATG 
GAGGCTGCCATCCAGGAGATCACCCAGGAAGTCGGCCAGGCCAAGGAGGCGCTGGAGAAAGAGATCGGCGAG 
CGCAAGGAGCTGGAAAGCCAACTGGTGCAGACGGAGAAGCTTGCCTCGATCGGCCACCTGGCCGCCGGCGTC 
GCCCATGAGATCAATAACCCCATCAGCTACGTTTCCTCCAACTACACCACCCTGGAGGAGCACGTCAGGCGT 
TTGCTGGAGGTACTTGAAGCCTATGAAGAGGCTCGCCCCGCGATCCGCGACGAGGCGCTGGCAAGACGCCTG 
GAGCAGCTCGGCGAGCGGGTCGAACTGGCCTTCGTCAAGGAGGATGTCGCTGTGTTGCTGCGCGAATCCAGG 
GAGGGAATAGGGCGGGTGCGCAAGATCGTCCAGGACCTGAAGAACTTCTCCCGCGTCGACGCCGAGGACGAC 
TGGCAGTGGACCGATCTGCACCAGGGGATCGAGTCGACCCTCAATATCGTCGCCAGCGAACTGAAGTACCGG 
GCCGACGTGGTCCGCGAATACGGCGATCTGCCCGAGGTGAAGTGCCTGCCGTCGCAGATCAACCAGGTGGTG 
ATGAACCTGGTGATGAACGCGGCCCAGGCGATGGGGCCTGAGCGGGGTCGCATCGTGATTCGCACGGGGCAT 
ACCCTGGAGCATGCCTGGATCGAGGTGGAAGACTCGGGGCAGGGCATCTCCCCCGAGATCCTGCCGCGCATC 
TTCGATCCGTTCTTCACCACCAAGCCGGTAGGCAAGGGGACCGGCCTGGGGTTGTCGCTCTCCTACGGCATC 
GTCCAGAAACACGGCGGCACCATCGAGGTACGCAGCCAGCCGGGAGTCGGCAGCGCTTTCCGGATCGTGCTT 
CCCCTGGAATCGCCTGGCAACCTGGGGGGAGCCCACGGAAATTAA