ViewGene
Locus Name:
GeneID:
Location:

GeneID:1022
TrivialName: PA14_31950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31950
PAO1 Ortholog Locus:PA2524
Sequence Length:1419
Protein Length:472
Start: 2782857
Stop: 2781439
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05912.1|AE004679_6 (AE004679) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 467/472 (98%), Positives = 469/472 (99%)
Sequence:
ATGACGCCACCAGGCCGACTGTCGCTGCGCCTGGCCCTGCTGGTCGGCGCCCTCGGCGCGCTGCTGGCCCTG
GCGCTCGGCGCGATGGCGCACTGGAACCTCGGCCGCGAGCTGGAAGCCCGCGAGCGGGAAAACCTGCAATTG
AAGCTGGAGCAGATCCGCCACAGCCTGGAAGACGATCTCGACCTGCGCAGCGACCCGGCCGTACAGGCGCAT
GCCCTGCAGGACCAACTGGTGGCCCACAGCGGCCTGCACCTGAGCATTCTCGACAGCCGCAGCGGCCAGCCG
CTGATGAGCTTCGGCGACCAGGCCGCGGCCAGCGTCGCGGCCAACCGCGCGCTTCTCGCCCGCTTGCAGGCG
GATGCCCGCCAGCCGGTGTTCCAGAGCTGGAGCACCGGCAACGACCAGCGCCTGCTGAGCATCGGCGCTTCC
ATGCGCATGAAGAACGGCACCCCGGTACAGGTGTTGCTGAGCAGCGAGCGCAACGCCGACGAGCGCCTGCTC
GACGGCTTCCTCCGCGCCACCCTGCTGGCCCTGCCCTTCCTCCTGCCATTGATCGCCCTGGCCGCCTGGTGG
GTGGTGCGTGCCGGCCTCGAACCGTTGAACCGCTTCCGCCGGGTGGCCGCCCAGGTCAGCCCGCAGGATCTC
TCCTACCGCATCCCCGAGCAGAACCTGCCGCGCGAGCTGGACAGCCTGGCCCGCAGCTTCAACCACATGCTC
GCCCGCCTCGAGGATGGCGTACGCCAGCTCTCGCAGTTCTCCGACGACCTGGCCCACGAACTGCGCGCGCCG
ATCTGCAACCTGCTGGTGCGCAACCAGGTGCTGCTCAGCCAGCATCGCGACAGCACGGCATACCGCGAAGCC
CTGGAGTCCAATGCCGAGGAACTGGAGCGGCTGTCGCGGATCGTCACCGACATGCTGTTCCTGGTGCAGGTG
GACAACCCGGCGATCCAGGCCCAGTTCGGCTGCGTCGCCCTGCACGAGCAGGCGGCCAAGGTCATCGACCTG
TACGAGATGGTCGCCGAGGACAAGGGCGTCGAACTGCGCCTGTCCGGCAGCGGCTTCGCCCACGGCGACAAC
CTGATGATCCAGCGCGCCATTTCCAACCTGGTGTCCAACGCCGTGCGCCACACCCCGCAAGGCGGGCGCATC
GACGTGCGGATCGGGGAGCGCGCGGGGCACACCGAGGTGAGGGTCAGCAACGACGGCCCGGGCATCCCGCCG
GAGTACCTGCCGCACCTGTTCGAGCGCTTCTACCGCCGCGCCGGACGCCAGAGTGGAGCCCAGGCCGGCACC
GGCCTGGGGCTGGCCATCGTGCAATCGATCATGGCCTACCACGGCGGCCGCGCCGAAGCGGAAAGCGTACCG
CAGCAGAAGACCCACCTGCGCCTGCTGTTCCCTTCGACGGGCGCTGCCTGA
Translation:
MTPPGRLSLRLALLVGALGALLALALGAMAHWNLGRELEARERENLQLKLEQIRHSLEDDLDLRSDPAVQAH
ALQDQLVAHSGLHLSILDSRSGQPLMSFGDQAAASVAANRALLARLQADARQPVFQSWSTGNDQRLLSIGAS
MRMKNGTPVQVLLSSERNADERLLDGFLRATLLALPFLLPLIALAAWWVVRAGLEPLNRFRRVAAQVSPQDL
SYRIPEQNLPRELDSLARSFNHMLARLEDGVRQLSQFSDDLAHELRAPICNLLVRNQVLLSQHRDSTAYREA
LESNAEELERLSRIVTDMLFLVQVDNPAIQAQFGCVALHEQAAKVIDLYEMVAEDKGVELRLSGSGFAHGDN
LMIQRAISNLVSNAVRHTPQGGRIDVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFYRRAGRQSGAQAGT
GLGLAIVQSIMAYHGGRAEAESVPQQKTHLRLLFPSTGAA*
AnnotationID:1031GeneID:1022
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 18:06:14
Gene Name:
Confidence Code:3
GeneProduct:putative heavy metal sensor histidine kinase
Cell Localization:()
Synonyms:cztS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642,smart00387,cd00075
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG09630.1| (AY007258) CztS [Pseudomonas fluorescens]
          Length = 478

 Score =  394 bits (1011), Expect = e-109
 Identities = 217/464 (46%), Positives = 300/464 (64%), Gaps = 9/464 (1%)

>gb|AAN67059.1|AE016334_8 (AE016779) heavy metal sensor histidine kinase [Pseudomonas putida
           KT2440]
          Length = 460

 Score =  392 bits (1006), Expect = e-108
 Identities = 220/464 (47%), Positives = 293/464 (63%), Gaps = 12/464 (2%)

>gb|AAO53923.1| (AE016857) heavy metal sensor histidine kinase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 463

 Score =  336 bits (861), Expect = 2e-91
 Identities = 194/465 (41%), Positives = 271/465 (58%), Gaps = 8/465 (1%)






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
CD-Length = 336 residues,  88.7% aligned
Score =  139 bits (351), Expect = 5e-34
Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 13/307 (4%)

smart00387, HATPase_c, Histidine kinase-like ATPases
CD-Length = 112 residues,  97.3% aligned
Score =  115 bits (290), Expect = 1e-26
Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 1/110 (0%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score =  103 bits (257), Expect = 6e-23
Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 3/105 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2047




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19189




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33082




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1022_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1022
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1840
                           PA2524_tr
                           translation of PA2524
                           472
                           98.94
                           99.36
                           0
                           2350.0
     

     
     
63857
                           gb|AAG05912.1|AE004679_6
                           (AE004679) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           472
                           98.94
                           99.36
                           0
                           2350.0
     

     
     
63859
                           gb|AAN67059.1|AE016334_8
                           (AE016779) heavy metal sensor histidine kinase [Pseudomonas putida KT2440]
                           476
                           47.26
                           63.02
                           20
                           1015.0
     

     
     
63858
                           gb|AAG09630.1|
                           (AY007258) CztS [Pseudomonas fluorescens]
                           497
                           43.86
                           60.36
                           44
                           1017.0
     

     
     
63861
                           gb|AAO53923.1|
                           (AE016857) heavy metal sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           473
                           41.64
                           57.71
                           11
                           864.0
     

     






      

          
GC ORFID: 44024How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2524Glimmer Score: 

          
Start: 2171069Stop: 2172487

          
Length: 1419


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2524 translation of PA2524Homolog Bit Score 909.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6559 (ORF: BLASTX 340.0), t_PA1438 (ORF: BLASTX 199.0), psyr_15may02_Scaffold3_revised_gene4947 (ORF: BLASTX 199.0), t_PA2524 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCCACCAGGCCGACTGTCGCTGCGCCTGGCCCTGCTGGTCGGCGCCCTCGGCGCGCTGCTGGCCCTG 
GCGCTCGGCGCGATGGCGCACTGGAACCTCGGCCGCGAGCTGGAAGCCCGCGAGCGGGAAAACCTGCAATTG 
AAGCTGGAGCAGATCCGCCACAGCCTGGAAGACGATCTCGACCTGCGCAGCGACCCGGCCGTACAGGCGCAT 
GCCCTGCAGGACCAACTGGTGGCCCACAGCGGCCTGCACCTGAGCATTCTCGACAGCCGCAGCGGCCAGCCG 
CTGATGAGCTTCGGCGACCAGGCCGCGGCCAGCGTCGCGGCCAACCGCGCGCTTCTCGCCCGCTTGCAGGCG 
GATGCCCGCCAGCCGGTGTTCCAGAGCTGGAGCACCGGCAACGACCAGCGCCTGCTGAGCATCGGCGCTTCC 
ATGCGCATGAAGAACGGCACCCCGGTACAGGTGTTGCTGAGCAGCGAGCGCAACGCCGACGAGCGCCTGCTC 
GACGGCTTCCTCCGCGCCACCCTGCTGGCCCTGCCCTTCCTCCTGCCATTGATCGCCCTGGCCGCCTGGTGG 
GTGGTGCGTGCCGGCCTCGAACCGTTGAACCGCTTCCGCCGGGTGGCCGCCCAGGTCAGCCCGCAGGATCTC 
TCCTACCGCATCCCCGAGCAGAACCTGCCGCGCGAGCTGGACAGCCTGGCCCGCAGCTTCAACCACATGCTC 
GCCCGCCTCGAGGATGGCGTACGCCAGCTCTCGCAGTTCTCCGACGACCTGGCCCACGAACTGCGCGCGCCG 
ATCTGCAACCTGCTGGTGCGCAACCAGGTGCTGCTCAGCCAGCATCGCGACAGCACGGCATACCGCGAAGCC 
CTGGAGTCCAATGCCGAGGAACTGGAGCGGCTGTCGCGGATCGTCACCGACATGCTGTTCCTGGTGCAGGTG 
GACAACCCGGCGATCCAGGCCCAGTTCGGCTGCGTCGCCCTGCACGAGCAGGCGGCCAAGGTCATCGACCTG 
TACGAGATGGTCGCCGAGGACAAGGGCGTCGAACTGCGCCTGTCCGGCAGCGGCTTCGCCCACGGCGACAAC 
CTGATGATCCAGCGCGCCATTTCCAACCTGGTGTCCAACGCCGTGCGCCACACCCCGCAAGGCGGGCGCATC 
GACGTGCGGATCGGGGAGCGCGCGGGGCACACCGAGGTGAGGGTCAGCAACGACGGCCCGGGCATCCCGCCG 
GAGTACCTGCCGCACCTGTTCGAGCGCTTCTACCGCCGCGCCGGACGCCAGAGTGGAGCCCAGGCCGGCACC 
GGCCTGGGGCTGGCCATCGTGCAATCGATCATGGCCTACCACGGCGGCCGCGCCGAAGCGGAAAGCGTACCG 
CAGCAGAAGACCCACCTGCGCCTGCTGTTCCCTTCGACGGGCGCTGCCTGA