ViewGene

Locus Name:
GeneID:
Location:

GeneID:1021
TrivialName: PA14_33730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33730
PAO1 Ortholog Locus:PA2393
Sequence Length:1347
Protein Length:448
Start: 2995167
Stop: 2993821
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05781.1|AE004665_8 (AE004665) probable dipeptidase precursor [Pseudomonas aeruginosa PAO1]
Identities = 448/448 (100%), Positives = 448/448 (100%)
Sequence:
ATGACTAGAACACGCACACGCAAGGCCCTCTACCTCGGCTTGCCGATCTTCCTCATCCTCGTCGGCGGCGGC
CTGCTGGCCTGGAAGACCTTCGGCCCGAGCGAAGCGGGCTACCCGCGCAAGGTCATGAAGCACGCCGAGGAG
TTGCATGAGCGCATCCTCTCCTTCGATAGCCGGATCACCATCCCGCCGGACTTCGGCACCGAAGGCAACGAG
TTCGACAAGGACGGACCGAACCAGCTCGACCTGGTCAAGGCGGGCCGCGGGCGCCTGTCCGGCGCTGCCCTG
GCGATCTTCGGCTGGCCGGAGATGTGGAACGGCCCGAACGCGCCACACAAGCCGACCCCGGGATTCGTCGAC
GAGGCTCGTCACCAGCAGGAAATTCGTTACAAGATTCTCACCGGCATGGTCCGCGACTTCCCCAACCAGGTC
GGCATCGCCTACTCCCCCGAGGACTTCCGCCGCCTGGCCATGGAAGGCAAGTTCGCCATCGTCATGAGCATG
CTCAACGCCTACCCGCTGGGCGACGACCTGTCCCAGCTGGACAAATGGGCCGCCCGCGGCGTGCGCATGTTC
GGCTTCAATTATGTCGGCAACAACGACTGGTCCGACTCTTCCCGTCCCTTGCCGTTCTTCAACGACACGGCG
GATGCCCTGGGCGGCCTCTCCCCGCTAGGCAAGCAGGCGGTCGAACGGCTCAACGATCTCGGGGTGATCATC
GACGTCTCGCAGATGTCGACCAAGGCCCTGGAACAGGTCGCCGCCCTCAGCCGCGCGCCCATCGTCGCCTCG
CACTCCGCGCCGCGTGCCCTGGTGGACATCAAGCGCAACCTCAGCGACCACGAGATGCAACTGATCAAGGAC
AGCGGCGGCGTGATCCAGGTGGTCGGCTTCCCCGCCTACCTGCGTCCGCTGAGCAAACCGACCCTGGACAAG
CTCAACGCCCTGCGCGCGCGCTTCGACCTGCCACCCCTGGAAGGCCTGGACTATGCGCTGATGCCGGGCGAT
CCGATCATCACCATCTGGCCGGAACAACGCTTCGGTGAATACGCCAGCGCCCTCTACGGCATCCTGGAGGAG
GAGCCCAAGGCCGGCCTCAAGGAACTGGTGGACGCCATCGACTACACGGTGAAGAAGGTCGGCATCGACCAC
GTGGGCATCAGCTCGGACTTCAACGACGGTGGCGGCGTGGACGGCTGGAAGGATGTCAGCGAAATCCGCAAC
GTCACTGCCGAACTGATCACCCGCGGTTATTCCGATGCCGACATCGCCAAGCTCTGGGGAGGCAACTTCCTG
CGCGCCTGGGGCGAAGTGCAAAAACGCGCCAAGCCGACAGCTACCCCCTGA
Translation:
MTRTRTRKALYLGLPIFLILVGGGLLAWKTFGPSEAGYPRKVMKHAEELHERILSFDSRITIPPDFGTEGNE
FDKDGPNQLDLVKAGRGRLSGAALAIFGWPEMWNGPNAPHKPTPGFVDEARHQQEIRYKILTGMVRDFPNQV
GIAYSPEDFRRLAMEGKFAIVMSMLNAYPLGDDLSQLDKWAARGVRMFGFNYVGNNDWSDSSRPLPFFNDTA
DALGGLSPLGKQAVERLNDLGVIIDVSQMSTKALEQVAALSRAPIVASHSAPRALVDIKRNLSDHEMQLIKD
SGGVIQVVGFPAYLRPLSKPTLDKLNALRARFDLPPLEGLDYALMPGDPIITIWPEQRFGEYASALYGILEE
EPKAGLKELVDAIDYTVKKVGIDHVGISSDFNDGGGVDGWKDVSEIRNVTAELITRGYSDADIAKLWGGNFL
RAWGEVQKRAKPTATP*
AnnotationID:1030GeneID:1021
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 08:08:11
Gene Name:
Confidence Code:3
GeneProduct:putative dipeptidase precursor
Cell Localization:()
Synonyms:PA2393
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative Zn-dependent dipeptidase
Functional Category Confidence Code:5
COGs:COG2355
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55673.1| (AE016863) renal dipeptidase family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 447

 Score =  683 bits (1763), Expect = 0.0
 Identities = 335/449 (74%), Positives = 379/449 (84%), Gaps = 3/449 (0%)

>gb|AAN69794.1|AE016616_1 (AE016789) dipeptidase, putative [Pseudomonas putida KT2440]
          Length = 462

 Score =  634 bits (1634), Expect = 0.0
 Identities = 308/447 (68%), Positives = 359/447 (80%), Gaps = 3/447 (0%)
Structural Features:
COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog 
[Amino acid transport and metabolism]
CD-Length = 313 residues, 100.0% aligned
Score =  249 bits (638), Expect = 4e-67
Identities = 121/399 (30%), Positives = 166/399 (41%), Gaps = 87/399 (21%)

Genomic Context:
Comment:
ReferenceID:2045
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19187
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32943
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1021_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1021

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1839 PA2393_tr translation of PA2393 448 99.99 99.99 0 2349.0
63854 gb|AAG05781.1|AE004665_8 (AE004665) probable dipeptidase precursor [Pseudomonas aeruginosa PAO1] 448 99.99 99.99 0 2349.0
63855 gb|AAO55673.1| (AE016863) renal dipeptidase family protein [Pseudomonas syringae pv. tomato str. DC3000] 449 74.61 84.40 3 1767.0
63856 gb|AAN69794.1|AE016616_1 (AE016789) dipeptidase, putative [Pseudomonas putida KT2440] 465 66.23 77.20 20 1637.0
GC ORFID: 44023How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2393Glimmer Score:
Start: 1958749Stop: 1960095
Length: 1347
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2393 translation of PA2393Homolog Bit Score 909.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene464 (ORF: BLASTX 687.0), t_PA2393 (ORF: GLIMMER)
GC ORF Sequence
ATGACTAGAACACGCACACGCAAGGCCCTCTACCTCGGCTTGCCGATCTTCCTCATCCTCGTCGGCGGCGGC
CTGCTGGCCTGGAAGACCTTCGGCCCGAGCGAAGCGGGCTACCCGCGCAAGGTCATGAAGCACGCCGAGGAG
TTGCATGAGCGCATCCTCTCCTTCGATAGCCGGATCACCATCCCGCCGGACTTCGGCACCGAAGGCAACGAG
TTCGACAAGGACGGACCGAACCAGCTCGACCTGGTCAAGGCGGGCCGCGGGCGCCTGTCCGGCGCTGCCCTG
GCGATCTTCGGCTGGCCGGAGATGTGGAACGGCCCGAACGCGCCACACAAGCCGACCCCGGGATTCGTCGAC
GAGGCTCGTCACCAGCAGGAAATTCGTTACAAGATTCTCACCGGCATGGTCCGCGACTTCCCCAACCAGGTC
GGCATCGCCTACTCCCCCGAGGACTTCCGCCGCCTGGCCATGGAAGGCAAGTTCGCCATCGTCATGAGCATG
CTCAACGCCTACCCGCTGGGCGACGACCTGTCCCAGCTGGACAAATGGGCCGCCCGCGGCGTGCGCATGTTC
GGCTTCAATTATGTCGGCAACAACGACTGGTCCGACTCTTCCCGTCCCTTGCCGTTCTTCAACGACACGGCG
GATGCCCTGGGCGGCCTCTCCCCGCTAGGCAAGCAGGCGGTCGAACGGCTCAACGATCTCGGGGTGATCATC
GACGTCTCGCAGATGTCGACCAAGGCCCTGGAACAGGTCGCCGCCCTCAGCCGCGCGCCCATCGTCGCCTCG
CACTCCGCGCCGCGTGCCCTGGTGGACATCAAGCGCAACCTCAGCGACCACGAGATGCAACTGATCAAGGAC
AGCGGCGGCGTGATCCAGGTGGTCGGCTTCCCCGCCTACCTGCGTCCGCTGAGCAAACCGACCCTGGACAAG
CTCAACGCCCTGCGCGCGCGCTTCGACCTGCCACCCCTGGAAGGCCTGGACTATGCGCTGATGCCGGGCGAT
CCGATCATCACCATCTGGCCGGAACAACGCTTCGGTGAATACGCCAGCGCCCTCTACGGCATCCTGGAGGAG
GAGCCCAAGGCCGGCCTCAAGGAACTGGTGGACGCCATCGACTACACGGTGAAGAAGGTCGGCATCGACCAC
GTGGGCATCAGCTCGGACTTCAACGACGGTGGCGGCGTGGACGGCTGGAAGGATGTCAGCGAAATCCGCAAC
GTCACTGCCGAACTGATCACCCGCGGTTATTCCGATGCCGACATCGCCAAGCTCTGGGGAGGCAACTTCCTG
CGCGCCTGGGGCGAAGTGCAAAAACGCGCCAAGCCGACAGCTACCCCCTGA