ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1020

TrivialName: PA14_61560

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_61560

PAO1 Ortholog Locus: PA4654

Sequence Length: 1374

Protein Length: 457

Start: 5494200

Stop: 5492827

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08041.1|AE004879_7 (AE004879) probable MFS transporter [Pseudomonas aeruginosa PAO1] Identities = 457/457 (100%), Positives = 457/457 (100%)

Sequence:

ATGCATAACAACAATAACGGCTATCCCTCCAACCTTGCGGCCTGGACCACGGTGGCGATCCTCATGGTCGCC
TATGTGCTGTCCTTCATCGACCGGCAGATCCTCAACCTGCTGGTCGGCCCGATCCGCCGTGACCTGGCCATC
AGCGATACGGAAATGAGCCTGCTGATGGGCTTGTCCTTCGCCCTGTTCTACACCCTTTGCGGTATCCCGCTC
GGACGCATGGCCGACAACCGCAGCCGGCGCGGTCTGATCCTGTTCGGCGTGCTGGTGTGGAGCGCGATGACC
GCGGCCTGCGGTCTGGCGCGCAGCTATTGGCAATTCCTCACCTTCCGGGTCGGCGTCGGGGTCGGCGAGGCG
GCGCTGTCGCCAGCGGCCTATTCGCTGATCGCCGACAGCTTCCCGCGCGAGCGTCGGGCGACGGCGATCAGC
GTCTACTCGATGGGCATCTACCTGGGCTCGGGGCTGGCCTTCCTGCTCGGCGGGCTGGTGATCAAGTTCGCC
TCGGCCCAGGGCGACGTGCACCTGCCGCTGTTCGGCGAGGTGCGCCCGTGGCAACTGATCTTCCTCATCCTC
GGCGCCGCCGGCGTGCTCTTCTGCCTGTTGCTGCTGGCGATCCGCGAGCCGGCTCGGCGCGGAGTCGGCGCA
GGCGTGGCGGTGCCGCTGGGCGAGGTCGGCGCCTACCTGCGGGCCAACCGCAAGACCGTGCTCTGCCACAAC
TTCGGTTTCGCCTGCCTGTCCTTCGCCGGCTACGGCAGCGGCGCCTGGGTGCCGACCTTCTTCGTCCGCACC
CACGGCTGGGACGCCGGTCATGTCGGGGTGGTCTACGGCAGCATCGTCGCGGTGTTCGGCTGTCTCGGCATC
GTCTTCGGCGGGCGCCTGGCCGACTACTGGGCGAAGCGCGGGCGCAGCGACGCGAACATGCGCGTCGGGCTG
CTCGCCGCCTGGGCGGTGATTCCCTTCACCCTGGTCTATCCGCTGCTGGACAACGCCAATTGGGCGGCGGCG
CTGATGGCGCCGACGGTGTTCTTCCTGAGCATGCCGTTCGGCGTGGCCCCGGCGGCGATCCAGGAGATCATG
CCCAACTCGATGCGCGGCCAGGCCTCGGCGATCTACCTGTTCGTGGTCACCCTGTTCGGTCTCGGCGTGGGC
CCGACGGCGGTGGCGCTGGTCACCGATTTCGTCTTCGCCGACGACATGGCGCTGCGCTACTCGCTGCTGCTG
GTGACCCTGGCCGCGGTGCTTGGCGCGGTGGTCCTGCTGGGGATCGGCCTCAAGCCCTATCGCGCCAGCCTG
GAGCACCTGAAGGACTGGAGCCTGCGACGGGAAGGCGAGGGCGGCGAGGATTGGAAGGCGTCCCGGCAGCCG
GCCTGA

Translation:

MHNNNNGYPSNLAAWTTVAILMVAYVLSFIDRQILNLLVGPIRRDLAISDTEMSLLMGLSFALFYTLCGIPL
GRMADNRSRRGLILFGVLVWSAMTAACGLARSYWQFLTFRVGVGVGEAALSPAAYSLIADSFPRERRATAIS
VYSMGIYLGSGLAFLLGGLVIKFASAQGDVHLPLFGEVRPWQLIFLILGAAGVLFCLLLLAIREPARRGVGA
GVAVPLGEVGAYLRANRKTVLCHNFGFACLSFAGYGSGAWVPTFFVRTHGWDAGHVGVVYGSIVAVFGCLGI
VFGGRLADYWAKRGRSDANMRVGLLAAWAVIPFTLVYPLLDNANWAAALMAPTVFFLSMPFGVAPAAIQEIM
PNSMRGQASAIYLFVVTLFGLGVGPTAVALVTDFVFADDMALRYSLLLVTLAAVLGAVVLLGIGLKPYRASL
EHLKDWSLRREGEGGEDWKASRQPA*

AnnotationID:1029 GeneID:1020

AnnotatorUID: diggins

Modification Date/Time: 2005-03-08 06:06:40

Gene Name:

Confidence Code: 3

GeneProduct: putative MFS transporter

Cell Localization: ()

Synonyms: PA4654

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2043

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19185

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37590

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1020_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1020

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1838 PA4654_tr translation of PA4654 457 99.99 99.99 0 2353.0

63853 gb|AAG08041.1|AE004879_7 (AE004879) probable MFS transporter [Pseudomonas aeruginosa PAO1] 457 99.99 99.99 0 2353.0

GC ORFID: `44022`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4654`	Glimmer Score:
Start: `4757880`	Stop: `4756507`
Length: `1374`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4654 translation of PA4654`	Homolog Bit Score `910.0`
Other Homologs: `t_PA4654 (ORF: GLIMMER)`
GC ORF Sequence
ATGCATAACAACAATAACGGCTATCCCTCCAACCTTGCGGCCTGGACCACGGTGGCGATCCTCATGGTCGCC TATGTGCTGTCCTTCATCGACCGGCAGATCCTCAACCTGCTGGTCGGCCCGATCCGCCGTGACCTGGCCATC AGCGATACGGAAATGAGCCTGCTGATGGGCTTGTCCTTCGCCCTGTTCTACACCCTTTGCGGTATCCCGCTC GGACGCATGGCCGACAACCGCAGCCGGCGCGGTCTGATCCTGTTCGGCGTGCTGGTGTGGAGCGCGATGACC GCGGCCTGCGGTCTGGCGCGCAGCTATTGGCAATTCCTCACCTTCCGGGTCGGCGTCGGGGTCGGCGAGGCG GCGCTGTCGCCAGCGGCCTATTCGCTGATCGCCGACAGCTTCCCGCGCGAGCGTCGGGCGACGGCGATCAGC GTCTACTCGATGGGCATCTACCTGGGCTCGGGGCTGGCCTTCCTGCTCGGCGGGCTGGTGATCAAGTTCGCC TCGGCCCAGGGCGACGTGCACCTGCCGCTGTTCGGCGAGGTGCGCCCGTGGCAACTGATCTTCCTCATCCTC GGCGCCGCCGGCGTGCTCTTCTGCCTGTTGCTGCTGGCGATCCGCGAGCCGGCTCGGCGCGGAGTCGGCGCA GGCGTGGCGGTGCCGCTGGGCGAGGTCGGCGCCTACCTGCGGGCCAACCGCAAGACCGTGCTCTGCCACAAC TTCGGTTTCGCCTGCCTGTCCTTCGCCGGCTACGGCAGCGGCGCCTGGGTGCCGACCTTCTTCGTCCGCACC CACGGCTGGGACGCCGGTCATGTCGGGGTGGTCTACGGCAGCATCGTCGCGGTGTTCGGCTGTCTCGGCATC GTCTTCGGCGGGCGCCTGGCCGACTACTGGGCGAAGCGCGGGCGCAGCGACGCGAACATGCGCGTCGGGCTG CTCGCCGCCTGGGCGGTGATTCCCTTCACCCTGGTCTATCCGCTGCTGGACAACGCCAATTGGGCGGCGGCG CTGATGGCGCCGACGGTGTTCTTCCTGAGCATGCCGTTCGGCGTGGCCCCGGCGGCGATCCAGGAGATCATG CCCAACTCGATGCGCGGCCAGGCCTCGGCGATCTACCTGTTCGTGGTCACCCTGTTCGGTCTCGGCGTGGGC CCGACGGCGGTGGCGCTGGTCACCGATTTCGTCTTCGCCGACGACATGGCGCTGCGCTACTCGCTGCTGCTG GTGACCCTGGCCGCGGTGCTTGGCGCGGTGGTCCTGCTGGGGATCGGCCTCAAGCCCTATCGCGCCAGCCTG GAGCACCTGAAGGACTGGAGCCTGCGACGGGAAGGCGAGGGCGGCGAGGATTGGAAGGCGTCCCGGCAGCCG GCCTGA