ViewGene
Locus Name:
GeneID:
Location:

GeneID:1018
TrivialName: PA14_05010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05010
PAO1 Ortholog Locus:PA0383
Sequence Length:1347
Protein Length:448
Start: 440240
Stop: 441586
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03772.1|AE004476_2 (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 446/448 (99%), Positives = 448/448 (100%)
Sequence:
GTGTTGAAGAAACTGGGCATCCTGTTGCTCGGGGCCGGTTGCGCCTGGGCGGCGCAGGCCAAGGTAGACGAA
GTCCAGGCCGCACGCCTGGACCAGGACCTGACCCCGCTGGGAGCGGAGCGGGCCGGCAACGCCGATGGCAGC
ATCCCGCCCTGGACCGGCGGCATCACCCAGGCGCCGGCCGGCTACCGGCCCGGCATGCATCACCTCGACCCG
TTCGCCGCCGATCGTCCGCGCCTGGTCGTCGACAGCCGCAACATGGCCGCCTACCAGGCGCTGCTGACGCCG
GGCACCCAGGCCTTGCTGCAGGCCAACCCGGACTACCACCTGCGGGTCTTCCCCTCCCGCCGCAGCGCATCC
CTGCCGCAGCGCCTGTACGACGCTACCCGCGCCAACGCCAGCCGCGCCGAGCTGATCGCCGACGGCAACGGC
GTGCAAGGCGCTGCCGCCGGTGTGCCCTTCCCCCTGCCGCAGAGCGGCCAGGAAGCGATCTGGAACCACATC
ATGCGCTACCGCGGCGAGCAACTGCACCTGCAGACCAACCAGGCGGCGGTGCTGGCCAACGGCAGCTACAAC
CTGCTCAAGCTCGACCGCTACCTGTACTTCGTCTATGGCCGCGAGGGGATGATCCCGGAGAACCTCGACAAC
ACGTTGTTCTACTACAAGTACAAGGTGGTCGCGCCGGCGCGCCTGGCCGGTTCGGCGCTGGTGGTGCAGGAA
ACCCTCGACCAGGTGCTGTCGATCCGCAAGGCCTGGCGCTTCAACCGTGGCGAGCGGCGCGTGCGGCGCTTG
CCGACCCTGGCCTACGACAGCCTGCAGCCGGATACCAACGGCATGGCCACGGCGGACACCGTGGATGTCTAC
AACGGCGCACCGGACCACTACGAGTGGGCGTTGCTCGGCAAGCGCGAGATGCTGGTGCCTTACAACAGCTAC
GCGGTGCACCAGAAGGGCCTCGCCTATGGCGACATCCTCAAGAGCCGCTTCATCAATCCCGACCTGCTGCGC
TACGAGCTGCATCGCGTCTGGGTGGTCGAGGCGACCCTGCGCAAGGGCTTCAGCCATCCCTACGCCAAGCGC
CGCTTCTACCTCGACGAAGACAGCTGGCAGATCCTCGCCGCCGACATCTACGACAAGGATGGCGTGCTGACC
CGGGCCCAGGAGGTCCATCCGATCAACTACTACGATGTGCCGCTGGTCTCCAGCACCCTGGAAGCGATCTAC
GACTTCAAGGGCGGCCGCTACTTCGTCGATGGGCTGGACAACAACGAGCCGATGTACGACTTCGGCGTACAG
GTCGGGCCGCGCGACTTCACCCCGCAGGCGCTGCGCCGGGAGGGTAACTGA
Translation:
MLKKLGILLLGAGCAWAAQAKVDEVQAARLDQDLTPLGAERAGNADGSIPPWTGGITQAPAGYRPGMHHLDP
FAADRPRLVVDSRNMAAYQALLTPGTQALLQANPDYHLRVFPSRRSASLPQRLYDATRANASRAELIADGNG
VQGAAAGVPFPLPQSGQEAIWNHIMRYRGEQLHLQTNQAAVLANGSYNLLKLDRYLYFVYGREGMIPENLDN
TLFYYKYKVVAPARLAGSALVVQETLDQVLSIRKAWRFNRGERRVRRLPTLAYDSLQPDTNGMATADTVDVY
NGAPDHYEWALLGKREMLVPYNSYAVHQKGLAYGDILKSRFINPDLLRYELHRVWVVEATLRKGFSHPYAKR
RFYLDEDSWQILAADIYDKDGVLTRAQEVHPINYYDVPLVSSTLEAIYDFKGGRYFVDGLDNNEPMYDFGVQ
VGPRDFTPQALRREGN*
AnnotationID:1027GeneID:1018
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0383
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14271




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19181




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33708




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1018_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1018
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1831
                           PA0383_tr
                           translation of PA0383
                           448
                           99.55
                           99.99
                           0
                           2354.0
     

     
     
63694
                           gb|AAG03772.1|AE004476_2
                           (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           448
                           99.33
                           99.99
                           0
                           2351.0
     

     
     
1832
                           PA3081_tr
                           translation of PA3081
                           458
                           50.21
                           63.31
                           13
                           1121.0
     

     
     
63696
                           gb|AAG06469.1|AE004732_3
                           (AE004732) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           458
                           50.21
                           63.31
                           13
                           1121.0
     

     
     
63695
                           gb|AAN55626.1|AE015701_3
                           (AE015701) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           455
                           49.01
                           65.71
                           8
                           1157.0
     

     






      

          
GC ORFID: 44020How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0383Glimmer Score: 

          
Start: 6241582Stop: 6242928

          
Length: 1347


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0383 translation of PA0383Homolog Bit Score 911.0

          
Other Homologs:  t_PA3081 (ORF: BLASTX 432.0), psyr_15may02_Scaffold1_revised_gene732 (ORF: BLASTX 389.0), t_PA3922 (ORF: BLASTX 379.0), psyr_15may02_Scaffold3_revised_gene4328 (ORF: BLASTX 376.0), t_PA3421 (ORF: BLASTX 359.0), t_PA0383 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTGAAGAAACTGGGCATCCTGTTGCTCGGGGCCGGTTGCGCCTGGGCGGCGCAGGCCAAGGTAGACGAA 
GTCCAGGCCGCACGCCTGGACCAGGACCTGACCCCGCTGGGAGCGGAGCGGGCCGGCAACGCCGATGGCAGC 
ATCCCGCCCTGGACCGGCGGCATCACCCAGGCGCCGGCCGGCTACCGGCCCGGCATGCATCACCTCGACCCG 
TTCGCCGCCGATCGTCCGCGCCTGGTCGTCGACAGCCGCAACATGGCCGCCTACCAGGCGCTGCTGACGCCG 
GGCACCCAGGCCTTGCTGCAGGCCAACCCGGACTACCACCTGCGGGTCTTCCCCTCCCGCCGCAGCGCATCC 
CTGCCGCAGCGCCTGTACGACGCTACCCGCGCCAACGCCAGCCGCGCCGAGCTGATCGCCGACGGCAACGGC 
GTGCAAGGCGCTGCCGCCGGTGTGCCCTTCCCCCTGCCGCAGAGCGGCCAGGAAGCGATCTGGAACCACATC 
ATGCGCTACCGCGGCGAGCAACTGCACCTGCAGACCAACCAGGCGGCGGTGCTGGCCAACGGCAGCTACAAC 
CTGCTCAAGCTCGACCGCTACCTGTACTTCGTCTATGGCCGCGAGGGGATGATCCCGGAGAACCTCGACAAC 
ACGTTGTTCTACTACAAGTACAAGGTGGTCGCGCCGGCGCGCCTGGCCGGTTCGGCGCTGGTGGTGCAGGAA 
ACCCTCGACCAGGTGCTGTCGATCCGCAAGGCCTGGCGCTTCAACCGTGGCGAGCGGCGCGTGCGGCGCTTG 
CCGACCCTGGCCTACGACAGCCTGCAGCCGGATACCAACGGCATGGCCACGGCGGACACCGTGGATGTCTAC 
AACGGCGCACCGGACCACTACGAGTGGGCGTTGCTCGGCAAGCGCGAGATGCTGGTGCCTTACAACAGCTAC 
GCGGTGCACCAGAAGGGCCTCGCCTATGGCGACATCCTCAAGAGCCGCTTCATCAATCCCGACCTGCTGCGC 
TACGAGCTGCATCGCGTCTGGGTGGTCGAGGCGACCCTGCGCAAGGGCTTCAGCCATCCCTACGCCAAGCGC 
CGCTTCTACCTCGACGAAGACAGCTGGCAGATCCTCGCCGCCGACATCTACGACAAGGATGGCGTGCTGACC 
CGGGCCCAGGAGGTCCATCCGATCAACTACTACGATGTGCCGCTGGTCTCCAGCACCCTGGAAGCGATCTAC 
GACTTCAAGGGCGGCCGCTACTTCGTCGATGGGCTGGACAACAACGAGCCGATGTACGACTTCGGCGTACAG 
GTCGGGCCGCGCGACTTCACCCCGCAGGCGCTGCGCCGGGAGGGTAACTGA