ViewGene
Locus Name:
GeneID:
Location:

GeneID:1017
TrivialName: PA14_04520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04520
PAO1 Ortholog Locus:PA0345
Sequence Length:1386
Protein Length:461
Start: 403315
Stop: 401930
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03734.1|AE004472_6 (AE004472) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 455/461 (98%), Positives = 457/461 (99%)
Sequence:
TTGAGTCACACGACGCATCCCGGCCTCGACGCCCTCTGGCTGACCGAGGCCGTTCGCCTGCGCGAGGAGCAG
GCCGGTCCGCTGGAAGACAGCGAGGCGCTTCGCCAGGCGCTGGCCCAGGGCGGTTCCCTGCCGCGCCGTATT
CTCACCCGCGCCCACTGGCTGGGCCGCCGCGAGGGCCTGCTGGACGCCCAGCGGACCTGGCGCCAGGGTTCG
CGGCTGGCGCTGGCCCTGCTGCTGGTGCTGGCCCTGGCCAGCGGCGCCGGACTGGCCTTCGCCGCGCTTGGC
GACGGCCAGCGCCCGGTCAACGTGTTCTGGGCGCTGGCCAGCCTCCTCGGCCTGCACCTGCTGACCCTGCTC
GGCTGGGCCCTCGGCCTGCTCGCCGGCGGCGAGGCCGCGGGCGCGCTCGGCCGGCTCTGGCTGTGGCTCAGC
GGCAAGCTGGCGCGCGATGCCCGCGCCGCGCACCTGGCGCCGGCGCTATTGGTCCTGCTCGGCCGGCGCCGG
CTGGCGCGCTGGGGCCTCGGCGCGCTGGTCCACGGGCTCTGGCTGCTCGGCCTGCTGACCGCGCTGGCCATG
CTCCTCGGCCTGCTGGCGACCCGCCGCTACGGTTTCGTCTGGGAAACCACCATTCTCGGCAGCGATACCTTC
ATCGCCCTCACCCAGGCGCTCGGCGCCCTGCCGGCGTTGCTTGGCTTCCCGTTGCCGGACGCCGAGCTGATC
CGCGCCAGCGGCGACGCCGCCCTGGCCAGCGAAGCCGCACGGCACGCCTGGGCCGGCTGGCTGGTAGGCGTA
CTGCTGGTCTATGGGGTCCTGCCGCGCGCGCTGCTCGGTCTGTTCTGCCTGTGGCGCTGGAAACGCGGCCTG
GCCGACCTCGACCTGGACCTCGACGACCCAGGCTACAGCCTGCTGCGCGAACGCTTGATGCCGGCCAGCGAA
CGCCTCGGCGTCAGCGACGCGGCGCCGGACTGGCTACCGGAGCCGCAGGGCGGCCAGTCCGGCCAGGAAGCC
GCCGGAGCGGTGCTGGTGGCGGTGGAGCTGGACGATCGCCGGCCCTGGCCGCCGAAGCTCGCCGAAGGCGTC
GCCGACGCCGGCATCCTCGACGACGGCCAGCAGCGCCGTCGCCTGCTCGATCAACTGACCCGCTACCCGCCG
GCGCGCCTGGCCATCGCCTGCGACCCGCGTCGCTCGCCGGACCGCGGCACCCTGGCACTGCTCGGCGAACTC
GCCCGCTgCGCCGCCAGCACTCGCatctgGCTGCTCcAGGCTCCGCCCGGCGAAGCGCTCGACAGCGACCGC
CTGGGCGACTGGCACACCGCCCTGGAGCGCCTGCAACTGCCGCACGGCGAGACCTCGCCGCTGGCCTGGCTG
GAGACCGGCCATGACTGA
Translation:
MSHTTHPGLDALWLTEAVRLREEQAGPLEDSEALRQALAQGGSLPRRILTRAHWLGRREGLLDAQRTWRQGS
RLALALLLVLALASGAGLAFAALGDGQRPVNVFWALASLLGLHLLTLLGWALGLLAGGEAAGALGRLWLWLS
GKLARDARAAHLAPALLVLLGRRRLARWGLGALVHGLWLLGLLTALAMLLGLLATRRYGFVWETTILGSDTF
IALTQALGALPALLGFPLPDAELIRASGDAALASEAARHAWAGWLVGVLLVYGVLPRALLGLFCLWRWKRGL
ADLDLDLDDPGYSLLRERLMPASERLGVSDAAPDWLPEPQGGQSGQEAAGAVLVAVELDDRRPWPPKLAEGV
ADAGILDDGQQRRRLLDQLTRYPPARLAIACDPRRSPDRGTLALLGELARCAASTRIWLLQAPPGEALDSDR
LGDWHTALERLQLPHGETSPLAWLETGHD*
AnnotationID:1026GeneID:1017
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0345
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:14269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19179




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1017
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1830
                           PA0345_tr
                           translation of PA0345
                           461
                           98.69
                           99.13
                           0
                           2357.0
     

     
     
63688
                           gb|AAG03734.1|AE004472_6
                           (AE004472) hypothetical protein PA0345 [Pseudomonas aeruginosa PAO1]
                           461
                           98.48
                           99.13
                           0
                           2355.0
     

     
     
63689
                           gb|AAN70698.1|AE016713_4
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           464
                           65.94
                           76.07
                           4
                           1558.0
     

     
     
63690
                           gb|AAO53982.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           461
                           64.85
                           77.22
                           2
                           1540.0
     

     
     
63693
                           emb|CAE44055.1|
                           (BX640422) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           475
                           48.42
                           57.89
                           20
                           980.0
     

     






      

          
GC ORFID: 44019How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0345Glimmer Score: 

          
Start: 6204657Stop: 6203272

          
Length: 1386


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0345 translation of PA0345Homolog Bit Score 912.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6622 (ORF: BLASTX 607.0), t_PA0345 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGAGTCACACGACGCATCCCGGCCTCGACGCCCTCTGGCTGACCGAGGCCGTTCGCCTGCGCGAGGAGCAG 
GCCGGTCCGCTGGAAGACAGCGAGGCGCTTCGCCAGGCGCTGGCCCAGGGCGGTTCCCTGCCGCGCCGTATT 
CTCACCCGCGCCCACTGGCTGGGCCGCCGCGAGGGCCTGCTGGACGCCCAGCGGACCTGGCGCCAGGGTTCG 
CGGCTGGCGCTGGCCCTGCTGCTGGTGCTGGCCCTGGCCAGCGGCGCCGGACTGGCCTTCGCCGCGCTTGGC 
GACGGCCAGCGCCCGGTCAACGTGTTCTGGGCGCTGGCCAGCCTCCTCGGCCTGCACCTGCTGACCCTGCTC 
GGCTGGGCCCTCGGCCTGCTCGCCGGCGGCGAGGCCGCGGGCGCGCTCGGCCGGCTCTGGCTGTGGCTCAGC 
GGCAAGCTGGCGCGCGATGCCCGCGCCGCGCACCTGGCGCCGGCGCTATTGGTCCTGCTCGGCCGGCGCCGG 
CTGGCGCGCTGGGGCCTCGGCGCGCTGGTCCACGGGCTCTGGCTGCTCGGCCTGCTGACCGCGCTGGCCATG 
CTCCTCGGCCTGCTGGCGACCCGCCGCTACGGTTTCGTCTGGGAAACCACCATTCTCGGCAGCGATACCTTC 
ATCGCCCTCACCCAGGCGCTCGGCGCCCTGCCGGCGTTGCTTGGCTTCCCGTTGCCGGACGCCGAGCTGATC 
CGCGCCAGCGGCGACGCCGCCCTGGCCAGCGAAGCCGCACGGCACGCCTGGGCCGGCTGGCTGGTAGGCGTA 
CTGCTGGTCTATGGGGTCCTGCCGCGCGCGCTGCTCGGTCTGTTCTGCCTGTGGCGCTGGAAACGCGGCCTG 
GCCGACCTCGACCTGGACCTCGACGACCCAGGCTACAGCCTGCTGCGCGAACGCTTGATGCCGGCCAGCGAA 
CGCCTCGGCGTCAGCGACGCGGCGCCGGACTGGCTACCGGAGCCGCAGGGCGGCCAGTCCGGCCAGGAAGCC 
GCCGGAGCGGTGCTGGTGGCGGTGGAGCTGGACGATCGCCGGCCCTGGCCGCCGAAGCTCGCCGAAGGCGTC 
GCCGACGCCGGCATCCTCGACGACGGCCAGCAGCGCCGTCGCCTGCTCGATCAACTGACCCGCTACCCGCCG 
GCGCGCCTGGCCATCGCCTGCGACCCGCGTCGCTCGCCGGACCGCGGCACCCTGGCACTGCTCGGCGAACTC 
GCCCGCTgCGCCGCCAGCACTCGCatctgGCTGCTCcAGGCTCCGCCCGGCGAAGCGCTCGACAGCGACCGC 
CTGGGCGACTGGCACACCGCCCTGGAGCGCCTGCAACTGCCGCACGGCGAGACCTCGCCGCTGGCCTGGCTG 
GAGACCGGCCATGACTGA