ViewGene
Locus Name:
GeneID:
Location:

GeneID:1015
TrivialName: PA14_72250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72250
PAO1 Ortholog Locus:PA5474
Sequence Length:1374
Protein Length:457
Start: 6436955
Stop: 6438328
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08859.1|AE004960_2 (AE004960) probable metalloprotease [Pseudomonas aeruginosa PAO1]
Identities = 453/457 (99%), Positives = 453/457 (99%)
Sequence:
ATGCGTTCGTTGTCCACCCTGCTGCTGTTCTGCCTGCTCTGCCCCTGGTCGTACGCCGACCAGCGCAGCGAG
GTCGAAGCCTTCCAGCTGGAAAACGGCATGGGCGTGCTGCTCAAGCCCACCGAGCAGCGCCGGCACGTCTCG
ATCCGGCTGGTGGTGGGGGTCGGTTTCGCCGACTTCTCGTGCCGTGAAAAGCAGCTGCCGCACCTGCTCGAG
CACCTGTTCTTCAGCGGCCTGGACGGCGGCGATGAGGCCGACCTGGAAGCCCGCATGCAGGCCCTCGGCGGG
CAATGGAACGCCTATACCAGCGAAGGCGACACCACCTTCGTCATCGAGGCGCCTGCCGCCACCCAGCGGCAG
GTCCTCGACCTGTTGCTGGACACCATCACCCGCACCGAACTGGACGAGCCGCGCATCGCCGCCGCCAAGCGG
GTGATCGAGCGCGAAGGCGGTGGCCATTACTCGCACCTGCAGCGCTGGCTCGACCGCGAGAACCTGGGCCGT
GGCGCCATGGACCAACTGGCGGTGGAACTGGGCCTGGCCTGCTCCCAGCGCGCGCCGCTGGCGCCGCTTGGC
GCGGAGCAGCTGGAGCGGCTGCGCAGCGACTGGTACGTACCGGGCAACATGACCCTGATCCTGGTCGGTGAC
CTCGACCCGCGCCTGCCGGCCTATCTGACCCGGACCTTCGGCACCCTGGAAGACCACGAGCTCCCCGAGCGC
CGCGAGCTGCCGGCGGCCAACGGGCATGCCGAGGCCAGGCGCACCCTGATCACCCGGCCATTCGGCGAGGGT
GCGATGCTGCACTGGATCTATCCGGAGCCGGACGACGCCGACCCGGACGCCATGGTCCTGCTCCAGGCCTAT
ATGAACGACGCGCTGTACGCCGACCTGCGTGTGCGTCGCGGACTCACCTACGGGCCATCGACCGATCGCCAG
GTGTTCGCCAACCAGGGCTTCTTCAGCCTCGACGCGGATGTCGAGCGCAGCGACCTGCCCGCCAACGAGGCC
GCCCTGCGCGAGTTGCTCGACGGCATCCGCCAGCATGGCCTGGACCCGGTGCGTTTCAAGCGGGTGCAATTC
GCCGAGCGCGCCAGGCTGGCCTGGAGCACCCAGGGCAACGCGGCGCTGGCGGACTATTACTGGGGCTCGCTG
GCCGACTACGAGGACGGCCATTTCCCCAATGAGGAGCGCCGCCTGGCGAAGGTCAGCCTGCAACAGGCGAAC
GCGCTGGCGAAGCGGCTGTTCGACGGCGAAGGCTACCTGCGCATCGAAAAGCCGCTATTCGACGACGACATG
CTCTACCCATTGCTGCTCGCCGCCGGTCTCCTGGCCAGCGGCCTGCTCTGGTTCGGCCTGCGCCGCCGGCGC
GCCTGA
Translation:
MRSLSTLLLFCLLCPWSYADQRSEVEAFQLENGMGVLLKPTEQRRHVSIRLVVGVGFADFSCREKQLPHLLE
HLFFSGLDGGDEADLEARMQALGGQWNAYTSEGDTTFVIEAPAATQRQVLDLLLDTITRTELDEPRIAAAKR
VIEREGGGHYSHLQRWLDRENLGRGAMDQLAVELGLACSQRAPLAPLGAEQLERLRSDWYVPGNMTLILVGD
LDPRLPAYLTRTFGTLEDHELPERRELPAANGHAEARRTLITRPFGEGAMLHWIYPEPDDADPDAMVLLQAY
MNDALYADLRVRRGLTYGPSTDRQVFANQGFFSLDADVERSDLPANEAALRELLDGIRQHGLDPVRFKRVQF
AERARLAWSTQGNAALADYYWGSLADYEDGHFPNEERRLAKVSLQQANALAKRLFDGEGYLRIEKPLFDDDM
LYPLLLAAGLLASGLLWFGLRRRRA*
AnnotationID:1024GeneID:1015
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative metalloprotease
Cell Localization:()
Synonyms:PA5474
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0612
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53673.1| (AE016856) peptidase, M16 family [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 459

 Score =  444 bits (1143), Expect = e-124

>gb|AAN65778.1|AE016204_1 (AE016774) metalloprotease, insulinase family [Pseudomonas putida
           KT2440]
          Length = 468

 Score =  444 bits (1142), Expect = e-124
 Identities = 240/448 (53%), Positives = 298/448 (66%), Gaps = 6/448 (1%)






 
Structural Features:
COG0612, PqqL, Predicted Zn-dependent peptidases 
CD-Length = 438 residues,  96.6% aligned
Score =  198 bits (504), Expect = 1e-51
Identities = 106/426 (24%), Positives = 161/426 (37%), Gaps = 16/426 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2033




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19175




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33228




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1015_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1015
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1827
                           PA5474_tr
                           translation of PA5474
                           457
                           99.12
                           99.12
                           0
                           2356.0
     

     
     
63662
                           gb|AAG08859.1|AE004960_2
                           (AE004960) probable metalloprotease [Pseudomonas aeruginosa PAO1]
                           457
                           99.12
                           99.12
                           0
                           2356.0
     

     
     
63664
                           gb|AAN65778.1|AE016204_1
                           (AE016774) metalloprotease, insulinase family [Pseudomonas putida KT2440]
                           472
                           51.69
                           64.40
                           19
                           1153.0
     

     
     
63663
                           gb|AAO53673.1|
                           (AE016856) peptidase, M16 family [Pseudomonas syringae pv. tomato str. DC3000]
                           467
                           50.74
                           67.02
                           18
                           1153.0
     

     






      

          
GC ORFID: 44017How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5474Glimmer Score: 

          
Start: 5700644Stop: 5702017

          
Length: 1374


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5474 translation of PA5474Homolog Bit Score 912.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4061 (ORF: BLASTX 441.0), t_PA5474 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTCGTTGTCCACCCTGCTGCTGTTCTGCCTGCTCTGCCCCTGGTCGTACGCCGACCAGCGCAGCGAG 
GTCGAAGCCTTCCAGCTGGAAAACGGCATGGGCGTGCTGCTCAAGCCCACCGAGCAGCGCCGGCACGTCTCG 
ATCCGGCTGGTGGTGGGGGTCGGTTTCGCCGACTTCTCGTGCCGTGAAAAGCAGCTGCCGCACCTGCTCGAG 
CACCTGTTCTTCAGCGGCCTGGACGGCGGCGATGAGGCCGACCTGGAAGCCCGCATGCAGGCCCTCGGCGGG 
CAATGGAACGCCTATACCAGCGAAGGCGACACCACCTTCGTCATCGAGGCGCCTGCCGCCACCCAGCGGCAG 
GTCCTCGACCTGTTGCTGGACACCATCACCCGCACCGAACTGGACGAGCCGCGCATCGCCGCCGCCAAGCGG 
GTGATCGAGCGCGAAGGCGGTGGCCATTACTCGCACCTGCAGCGCTGGCTCGACCGCGAGAACCTGGGCCGT 
GGCGCCATGGACCAACTGGCGGTGGAACTGGGCCTGGCCTGCTCCCAGCGCGCGCCGCTGGCGCCGCTTGGC 
GCGGAGCAGCTGGAGCGGCTGCGCAGCGACTGGTACGTACCGGGCAACATGACCCTGATCCTGGTCGGTGAC 
CTCGACCCGCGCCTGCCGGCCTATCTGACCCGGACCTTCGGCACCCTGGAAGACCACGAGCTCCCCGAGCGC 
CGCGAGCTGCCGGCGGCCAACGGGCATGCCGAGGCCAGGCGCACCCTGATCACCCGGCCATTCGGCGAGGGT 
GCGATGCTGCACTGGATCTATCCGGAGCCGGACGACGCCGACCCGGACGCCATGGTCCTGCTCCAGGCCTAT 
ATGAACGACGCGCTGTACGCCGACCTGCGTGTGCGTCGCGGACTCACCTACGGGCCATCGACCGATCGCCAG 
GTGTTCGCCAACCAGGGCTTCTTCAGCCTCGACGCGGATGTCGAGCGCAGCGACCTGCCCGCCAACGAGGCC 
GCCCTGCGCGAGTTGCTCGACGGCATCCGCCAGCATGGCCTGGACCCGGTGCGTTTCAAGCGGGTGCAATTC 
GCCGAGCGCGCCAGGCTGGCCTGGAGCACCCAGGGCAACGCGGCGCTGGCGGACTATTACTGGGGCTCGCTG 
GCCGACTACGAGGACGGCCATTTCCCCAATGAGGAGCGCCGCCTGGCGAAGGTCAGCCTGCAACAGGCGAAC 
GCGCTGGCGAAGCGGCTGTTCGACGGCGAAGGCTACCTGCGCATCGAAAAGCCGCTATTCGACGACGACATG 
CTCTACCCATTGCTGCTCGCCGCCGGTCTCCTGGCCAGCGGCCTGCTCTGGTTCGGCCTGCGCCGCCGGCGC 
GCCTGA