ViewGene
Locus Name:
GeneID:
Location:

GeneID:1014
TrivialName: PA14_22310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22310
PAO1 Ortholog Locus:PA3238
Sequence Length:1362
Protein Length:453
Start: 1943893
Stop: 1942532
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06626.1|AE004746_10 (AE004746) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 450/453 (99%), Positives = 452/453 (99%)
Sequence:
ATGCCCCACTTCCTCCGTTTCGCTGCCCTGCTCGGCGGCCTCGCCCTCGGTTGTGCCAATCTGGCGCAGGCC
CGGGACGTGGACGCCGCGAGCTACGGCTATCCACTGACCAACCCGTTCGAGGCGACCATCGCCACCACGCCG
CCGGAACTGCGTCCCGAGCTTCCGCACAGCGAGGACATCGACCAGAAGGACTACAGCCTGAAATTGCGCCCG
GAGCGCGAGTTCGCCCTGCCGGACAACTTCTGGCCGGTGAAGAAGCTGCGCTACCGCCTGGCCCGCCAGGAT
CATGCGGCGCCGCTGATCTTCATCATCGCCGGGACTGGCGCGCACTATGCCAGCAGCTACCCGGAATACCTG
AAGAAGCTCTTCTACCAGGCCGGCTACCACGTGGTGCAGTTGTCCTCGCCGACCAGCTGGGACTTCATGGCC
GGCGCCTCGCGCTTCGCCACGCCGGGCTTTTCCAGCGACGACGCCGACGACCTGTACCGGGTGATGCAGGCG
GTGCGTGCGCAGCAGCGCGACCTGCCGGTGACCGACTACTACCTCACCGGCTATAGCTTGGGGGCGCTGAAC
GCCGCGTTCGTCAGCCACCTCGACGAAAGCCGCCAGAGCTTCAACTTCAAGAAGGTGCTGCTGCTCAACCCA
CCGGTGAACCTCTACACCTCGGTGAGCAACCTCGACAAACTGGTGGAAACCCAGGTCAAGGGCATCACCGAC
TCGCGCACCTTCTACGAGGTGGTGCTGAGCAAGCTGACCCGCTACTTCCGGCAGAAAGGCTACGTCGACATC
AACGACGCCATGCTCTACGACTTCCAGCAGTCGAAGCAGCGCCTGAGCAACGAGGAAATGGCCATGCTGATC
GGCACCTCGTTCCGTTTCTCCGCCGCCGACATCGCCTTCACCTCGGACCTGGTCAACCGTCGCGGCCTGATC
ACCCCGCCGAACTACCCGATCAACGAAGGCACCAGCCTGGAGCCCTTCTTCAAGCGCGCGCTGCAGTGCGAC
TTCGAGTGCTACATGACCGAGCAACTGATCCCGATGTGGCGAGCCCGTTACGACGGCGGCAGCCTGACCCAG
TTGGTCAACCAGGTCAGCCTCTACAAGCTGCAGGACTATCTGCACGACAGCCCGAAGATCGCCGTGATGCAC
AACGCCGACGACGTCATCCTCGGCCCGGGCGACCTCGGCTTCCTTCGCCGGACCTTCGGCGAACGCCTGACC
GTCTATCCCTATGGCGGTCACTGCGGCAACCTCAACTACAAGGTCAACGCGCAGGACATGCTGGACTTCTTC
GCCACGCCCGCCGCCGGACAGACCCAGGTCGCCAGCGCGGCCCTCACCCAGCAGGCAGGAAACTGA
Translation:
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRP
EREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSYPEYLKKLFYQAGYHVVQLSSPTSWDFMA
GASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRQSFNFKKVLLLNP
PVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLI
GTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQ
LVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFF
ATPAAGQTQVASAALTQQAGN*
AnnotationID:1023GeneID:1014
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3238
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:2031




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19173




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1014
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1826
                           PA3238_tr
                           translation of PA3238
                           453
                           99.33
                           99.77
                           0
                           2356.0
     

     
     
63658
                           gb|AAG06626.1|AE004746_10
                           (AE004746) hypothetical protein PA3238 [Pseudomonas aeruginosa PAO1]
                           453
                           99.33
                           99.77
                           0
                           2356.0
     

     
     
63659
                           gb|AAN67358.1|AE016362_2
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           453
                           74.83
                           84.54
                           21
                           1801.0
     

     
     
63660
                           gb|AAO55141.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           453
                           74.61
                           84.98
                           21
                           1800.0
     

     
     
63661
                           gb|AAR36063.1|
                           (AE017216) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           456
                           37.71
                           53.28
                           31
                           718.0
     

     






      

          
GC ORFID: 44016How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3238Glimmer Score: 

          
Start: 3010038Stop: 3011399

          
Length: 1362


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3238 translation of PA3238Homolog Bit Score 912.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5999 (ORF: BLASTX 698.0), t_PA3238 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCACTTCCTCCGTTTCGCTGCCCTGCTCGGCGGCCTCGCCCTCGGTTGTGCCAATCTGGCGCAGGCC 
CGGGACGTGGACGCCGCGAGCTACGGCTATCCACTGACCAACCCGTTCGAGGCGACCATCGCCACCACGCCG 
CCGGAACTGCGTCCCGAGCTTCCGCACAGCGAGGACATCGACCAGAAGGACTACAGCCTGAAATTGCGCCCG 
GAGCGCGAGTTCGCCCTGCCGGACAACTTCTGGCCGGTGAAGAAGCTGCGCTACCGCCTGGCCCGCCAGGAT 
CATGCGGCGCCGCTGATCTTCATCATCGCCGGGACTGGCGCGCACTATGCCAGCAGCTACCCGGAATACCTG 
AAGAAGCTCTTCTACCAGGCCGGCTACCACGTGGTGCAGTTGTCCTCGCCGACCAGCTGGGACTTCATGGCC 
GGCGCCTCGCGCTTCGCCACGCCGGGCTTTTCCAGCGACGACGCCGACGACCTGTACCGGGTGATGCAGGCG 
GTGCGTGCGCAGCAGCGCGACCTGCCGGTGACCGACTACTACCTCACCGGCTATAGCTTGGGGGCGCTGAAC 
GCCGCGTTCGTCAGCCACCTCGACGAAAGCCGCCAGAGCTTCAACTTCAAGAAGGTGCTGCTGCTCAACCCA 
CCGGTGAACCTCTACACCTCGGTGAGCAACCTCGACAAACTGGTGGAAACCCAGGTCAAGGGCATCACCGAC 
TCGCGCACCTTCTACGAGGTGGTGCTGAGCAAGCTGACCCGCTACTTCCGGCAGAAAGGCTACGTCGACATC 
AACGACGCCATGCTCTACGACTTCCAGCAGTCGAAGCAGCGCCTGAGCAACGAGGAAATGGCCATGCTGATC 
GGCACCTCGTTCCGTTTCTCCGCCGCCGACATCGCCTTCACCTCGGACCTGGTCAACCGTCGCGGCCTGATC 
ACCCCGCCGAACTACCCGATCAACGAAGGCACCAGCCTGGAGCCCTTCTTCAAGCGCGCGCTGCAGTGCGAC 
TTCGAGTGCTACATGACCGAGCAACTGATCCCGATGTGGCGAGCCCGTTACGACGGCGGCAGCCTGACCCAG 
TTGGTCAACCAGGTCAGCCTCTACAAGCTGCAGGACTATCTGCACGACAGCCCGAAGATCGCCGTGATGCAC 
AACGCCGACGACGTCATCCTCGGCCCGGGCGACCTCGGCTTCCTTCGCCGGACCTTCGGCGAACGCCTGACC 
GTCTATCCCTATGGCGGTCACTGCGGCAACCTCAACTACAAGGTCAACGCGCAGGACATGCTGGACTTCTTC 
GCCACGCCCGCCGCCGGACAGACCCAGGTCGCCAGCGCGGCCCTCACCCAGCAGGCAGGAAACTGA