ViewGene

Locus Name:
GeneID:
Location:

GeneID:1013
TrivialName: PA14_41820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41820
PAO1 Ortholog Locus:PA1758
Sequence Length:1362
Protein Length:453
Start: 3736022
Stop: 3737383
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05147.1|AE004601_12 (AE004601) para-aminobenzoate synthase component I [Pseudomonas aeruginosa PAO1]
Identities = 452/453 (99%), Positives = 452/453 (99%)
Sequence:
ATGCCCAGTTGTCATGTTCACCCCCTGCCCTACCATAGCGACCCAAGCTGTCTCTTTGCCATCATCCATGAG
GCGCCCGGTGCGGTGATGCTCGATTCGGGTCGCCCCATCGCTACCCGTGGACGCTATGACCTTATGAGCGCC
TGGCCATTGGCAGAACTGGCGCCGCTGCCCGACGAATCGGCCAACCGCTTCTTCGCCCGCCTACGCGAAGCG
GCCGGAAGCCTGGGCCCCGCGCAGCTGCCAGCGCCGTACGAACTGCCCTTCGCCGGCGGTCTGCTGGGCTAT
TTATCCTACGACCTGGGTCGGCGCATCGAGCGCATCGGCGAACACGCCCGCGATGACCTGGGCCTGCCGCTG
GCCTCCGTCGGCCTGTATGCCTGGGCGCTGATCAGCGACCACCAGGCCGGCACCAGCCAACTGGTATTCCAC
CCGCGATTGGACGAGCGCGAACGCCAGCGCCTGATCGCCCTGTTCAGCGAGGAAACGCAAGGCACGGCCGGC
AACTTCAAGCTTCTGGGAAAATTCCGACGGAGCATCAGCGCATCCGACTATCGGCAGGCGATCCGCCGCATC
CAGGACTACATCCAGGCAGGCGACTGCTACCAGGTGAACTATAGCCAGCGCTTCCAGGCCGCTTGCAGCGGC
TCGCCGTGGCCGGCCTATCGCGCCCTGCGCGAGGCCTGCCCGACGCCGTTCTCCGGCTACCTGCGACTGGCC
GACGGCGCGATCCTCAGCCTGTCGCCGGAGCGCTTCCTCAAGCTCGGCAAGGGCAAGGTGGAAACCCGGCCG
ATCAAGGGCACCCGCCCGCGCGGCAAGACGCCCGAGGAGGACATGGCGCTGGCGGCGTCGCTGCTGGCCAGC
CCCAAGGACCGCGCGGAAAACCTGATGATCGTCGACCTGCTGCGCAACGACATCGGACGCAGTTGCCAACCT
GGCAGCGTACGGGTACCGGAGCTGTTTGCCCTGGAAAGCTATCCCAACGTGCATCACCTGGTGAGCAGCGTC
ACCGGCGAACTGGCGCCGGGCAAGGACGCCCTCGACCTGCTGGAAGGCAGCTTCCCCGGCGGCTCGATCACC
GGCGCGCCGAAGATTCGCGCCATGCAGATCATCGACGAGCTGGAACCGAGCCGACGCGGCATCTACTGCGGC
AGCCTGTTCTACCTCGACGTGCGCGGCGAGATGGACAGCTCGATCGCCATCCGCACCCTGCTGGTCAGGGAC
GGCCAGGTCAGTTGCTGGGGCGGCGGCGGCATCGTCGCCGACTCGCACTGGGAGGACGAGTACCAGGAAACC
CTGGACAAGGTCCGGGTGCTGCTGGAAACCCTGGAAGGAATGGCCGGGACAGCGTCCCCGGAATAG
Translation:
MPSCHVHPLPYHSDPSCLFAIIHEAPGAVMLDSGRPIATRGRYDLMSAWPLAELAPLPDESANRFFARLREA
AGSLGPAQLPAPYELPFAGGLLGYLSYDLGRRIERIGEHARDDLGLPLASVGLYAWALISDHQAGTSQLVFH
PRLDERERQRLIALFSEETQGTAGNFKLLGKFRRSISASDYRQAIRRIQDYIQAGDCYQVNYSQRFQAACSG
SPWPAYRALREACPTPFSGYLRLADGAILSLSPERFLKLGKGKVETRPIKGTRPRGKTPEEDMALAASLLAS
PKDRAENLMIVDLLRNDIGRSCQPGSVRVPELFALESYPNVHHLVSSVTGELAPGKDALDLLEGSFPGGSIT
GAPKIRAMQIIDELEPSRRGIYCGSLFYLDVRGEMDSSIAIRTLLVRDGQVSCWGGGGIVADSHWEDEYQET
LDKVRVLLETLEGMAGTASPE*
AnnotationID:1022GeneID:1013
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 12:12:03
Gene Name:pabB
Confidence Code:2
GeneProduct:para-aminobenzoate synthase component I
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0147,pfam00425
Secondary Functional Category(ies):
EC Number:6.3.5.8
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55796.1| (AE016864) para-aminobenzoate synthase, component I [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 447

 Score =  620 bits (1599), Expect = e-177
 Identities = 309/447 (69%), Positives = 357/447 (79%), Gaps = 1/447 (0%)

>gb|AAN67942.1|AE016426_7 (AE016782) para-aminobenzoate synthase, component I [Pseudomonas
           putida KT2440]
          Length = 446

 Score =  607 bits (1566), Expect = e-173
 Identities = 292/447 (65%), Positives = 355/447 (79%), Gaps = 2/447 (0%)
Structural Features:
COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I 
[Amino acid transport and metabolism / Coenzyme metabolism]
CD-Length = 462 residues,  98.3% aligned
Score =  451 bits (1160), Expect = 1e-127
Identities = 197/456 (43%), Positives = 256/456 (56%), Gaps = 17/456 (3%)

pfam00425, Chorismate_bind, chorismate binding enzyme.
CD-Length = 263 residues, 100.0% aligned
Score =  338 bits (869), Expect = 7e-94
Identities = 144/263 (54%), Positives = 181/263 (68%)
Genomic Context:
Comment:
ReferenceID:2029
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19171
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37168
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1013_cdd.html
URL:
ReferenceID:37827
Author/Investigator(s): Goncharoff P, Nichols BP.
Title: Nucleotide sequence of Escherichia coli pabB indicates a common evolutionary origin of p-aminobenzoate synthetase and anthranilate synthetase.
PubMed: 6330050
MedLine:
Source:
J Bacteriol. 1984 Jul;159(1):57-62.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6330050
ReferenceID:37828
Author/Investigator(s): Arhin FF, Vining LC.
Title: Cloning, nucleotide sequence and expression in Streptomyces lividans and Escherichia coli of pabB from Lactococcus lactis subsp. lactis NCDO 496.
PubMed: 8409921
MedLine:
Source:
J Gen Microbiol. 1993 Aug;139(8):1785-93.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8409921
ReferenceID:37829
Author/Investigator(s): Goncharoff P, Nichols BP.
Title: Evolution of aminobenzoate synthases: nucleotide sequences of Salmonella typhimurium and Klebsiella aerogenes pabB.
PubMed: 3057324
MedLine:
Source:
Mol Biol Evol. 1988 Sep;5(5):531-48.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=89056707&dopt=Abstract
Homologs By Global Alignment
Gene ID:1013

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1824 PA1758_tr translation of PA1758 453 99.77 99.77 0 2358.0
63470 gb|AAG05147.1|AE004601_12 (AE004601) para-aminobenzoate synthase component I [Pseudomonas aeruginosa PAO1] 453 99.77 99.77 0 2358.0
63471 gb|AAO55796.1| (AE016864) para-aminobenzoate synthase, component I [Pseudomonas syringae pv. tomato str. DC3000] 454 68.06 78.63 8 1601.0
63472 gb|AAN67942.1|AE016426_7 (AE016782) para-aminobenzoate synthase, component I [Pseudomonas putida KT2440] 454 64.31 78.19 9 1570.0
63478 gb|AAA88207.1| (M22078) p-aminobenzoate synthase component I [Klebsiella aerogenes] 470 46.17 57.65 36 983.0
GC ORFID: 44015How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1758Glimmer Score:
Start: 1217887Stop: 1216526
Length: 1362
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1758 translation of PA1758Homolog Bit Score 912.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene378 (ORF: BLASTX 627.0), t_PA0609 (ORF: BLASTX 251.0), t_PA1758 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCAGTTGTCATGTTCACCCCCTGCCCTACCATAGCGACCCAAGCTGTCTCTTTGCCATCATCCATGAG
GCGCCCGGTGCGGTGATGCTCGATTCGGGTCGCCCCATCGCTACCCGTGGACGCTATGACCTTATGAGCGCC
TGGCCATTGGCAGAACTGGCGCCGCTGCCCGACGAATCGGCCAACCGCTTCTTCGCCCGCCTACGCGAAGCG
GCCGGAAGCCTGGGCCCCGCGCAGCTGCCAGCGCCGTACGAACTGCCCTTCGCCGGCGGTCTGCTGGGCTAT
TTATCCTACGACCTGGGTCGGCGCATCGAGCGCATCGGCGAACACGCCCGCGATGACCTGGGCCTGCCGCTG
GCCTCCGTCGGCCTGTATGCCTGGGCGCTGATCAGCGACCACCAGGCCGGCACCAGCCAACTGGTATTCCAC
CCGCGATTGGACGAGCGCGAACGCCAGCGCCTGATCGCCCTGTTCAGCGAGGAAACGCAAGGCACGGCCGGC
AACTTCAAGCTTCTGGGAAAATTCCGACGGAGCATCAGCGCATCCGACTATCGGCAGGCGATCCGCCGCATC
CAGGACTACATCCAGGCAGGCGACTGCTACCAGGTGAACTATAGCCAGCGCTTCCAGGCCGCTTGCAGCGGC
TCGCCGTGGCCGGCCTATCGCGCCCTGCGCGAGGCCTGCCCGACGCCGTTCTCCGGCTACCTGCGACTGGCC
GACGGCGCGATCCTCAGCCTGTCGCCGGAGCGCTTCCTCAAGCTCGGCAAGGGCAAGGTGGAAACCCGGCCG
ATCAAGGGCACCCGCCCGCGCGGCAAGACGCCCGAGGAGGACATGGCGCTGGCGGCGTCGCTGCTGGCCAGC
CCCAAGGACCGCGCGGAAAACCTGATGATCGTCGACCTGCTGCGCAACGACATCGGACGCAGTTGCCAACCT
GGCAGCGTACGGGTACCGGAGCTGTTTGCCCTGGAAAGCTATCCCAACGTGCATCACCTGGTGAGCAGCGTC
ACCGGCGAACTGGCGCCGGGCAAGGACGCCCTCGACCTGCTGGAAGGCAGCTTCCCCGGCGGCTCGATCACC
GGCGCGCCGAAGATTCGCGCCATGCAGATCATCGACGAGCTGGAACCGAGCCGACGCGGCATCTACTGCGGC
AGCCTGTTCTACCTCGACGTGCGCGGCGAGATGGACAGCTCGATCGCCATCCGCACCCTGCTGGTCAGGGAC
GGCCAGGTCAGTTGCTGGGGCGGCGGCGGCATCGTCGCCGACTCGCACTGGGAGGACGAGTACCAGGAAACC
CTGGACAAGGTCCGGGTGCTGCTGGAAACCCTGGAAGGAATGGCCGGGACAGCGTCCCCGGAATAG