ViewGene
Locus Name:
GeneID:
Location:

GeneID:1012
TrivialName: PA14_53220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53220
PAO1 Ortholog Locus:PA0854
Sequence Length:1395
Protein Length:464
Start: 4717492
Stop: 4718886
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04243.1|AE004520_6 (AE004520) fumarate hydratase [Pseudomonas aeruginosa PAO1]
Identities = 463/464 (99%), Positives = 464/464 (100%)
Sequence:
ATGAGCCGGACCGAAACCGATAGCCTGGGCACCATCGAGGTGCCCGACGACGCCTACTGGGGCGCCCAGACC
CAGCGCTCGCTGGAGAACTTCGCCATCGGCGGCCAGCGCATGCCGCTCGCCGTGATCCACGCCCTGGCGCTG
ATCAAGAAAGCCGCCGCGCGGGTCAACGACCACCTCGGCGAACTGCCGCCGGAAGTCGCCCGGTTGATTGAA
CAGGCCGCCGACGAGGTCCTCGCAGGCCGCCACGACGAACACTTCCCGCTGGTGGTCTGGCAGACCGGCAGC
GGCACCCAGACCAACATGAACGTCAACGAGGTGATCGCCGGCCGCGCCAACGAACTGGCCGGCAATCCGCGC
GGCGGCAAGTCGCCGGTGCATCCCAACGACCACGTCAACCGCGCGCAGAGTTCCAACGACAGCTTCCCCACC
GCCATGCACATCGCCGCCGCCAAGGCCGTGCACGAACAATTGCTGCCGGCCATCGCCGAGCTTTCCGGCGGT
CTCGCCGAACAGTCGGCGCGGCACGCCAGCCTGGTCAAGACCGGGCGCACCCACCTGATGGACGCCACGCCG
ATCACCTTCGGCCAGGAACTCTCGGCCTTCGTCGCCCAGCTCGACTACGCCGAGCGCGCCATCCGCGCGGCG
CTGCCGGCGGTCTACCAGTTGGCCCAGGGCGGCACCGCGGTGGGCACCGGGCTCAACGCGCCGAAGGGCTTC
GCCGACGCCATCGCCGCGGAAATCGCCGCCGAATCGGGCCTGCCCTTCGTCGCCGCGCCGAACAAGTTCGCC
GCCCTGGCCGGCCACGAGCCTCTGGTCATCCTCTCCGGCGCCCTGAAGAGCCTGGCGGTGGCCCTGATGAAG
ATCGCCAACGACCTGCGCCTGCTCGGCTCAGGCCCACGCGCCGGCTTCGCCGAGGTGAAGCTGCCGGCCAAC
GAACCGGGCAGCTCGATCATGCCCGGCAAGGTCAACCCGACCCAGTGCGAGGCGCTGTCGATGCTGGCCTGC
CAGGTCATGGGCAACGACAGCACGATTTCCTTCGCCGCCAGCCAGGGCCATCTGCAACTCAACGTGTTCAAG
CCGGTGATCGTCTACAACCTGCTGGAGTCCATCCGCCTGCTCGCCGACGGCTGCCGCAACTTCAACAAGCAT
TGCGTCGCCGGCCTGGAGCCGGACGCCCGGCGCATGGCCGACCTGCTGGAGCGCGGCCTGATGCTGGTCACC
GCACTGAACCCGCACATCGGCTACGACAAGGCCGCCGAAATTGCCAAGAAGGCCTACGCCGAAGGCACCACC
CTGCGCGCCGCGGCGCTGCAGCTGGGCTACCTGGACGAAGCGCAGTTCGACGAATGGGTACGGCCGGAGCAG
ATGCTGGAGGCCGGCCATCATGGTTGA
Translation:
MSRTETDSLGTIEVPDDAYWGAQTQRSLENFAIGGQRMPLAVIHALALIKKAAARVNDHLGELPPEVARLIE
QAADEVLAGRHDEHFPLVVWQTGSGTQTNMNVNEVIAGRANELAGNPRGGKSPVHPNDHVNRAQSSNDSFPT
AMHIAAAKAVHEQLLPAIAELSGGLAEQSARHASLVKTGRTHLMDATPITFGQELSAFVAQLDYAERAIRAA
LPAVYQLAQGGTAVGTGLNAPKGFADAIAAEIAAESGLPFVAAPNKFAALAGHEPLVILSGALKSLAVALMK
IANDLRLLGSGPRAGFAEVKLPANEPGSSIMPGKVNPTQCEALSMLACQVMGNDSTISFAASQGHLQLNVFK
PVIVYNLLESIRLLADGCRNFNKHCVAGLEPDARRMADLLERGLMLVTALNPHIGYDKAAEIAKKAYAEGTT
LRAAALQLGYLDEAQFDEWVRPEQMLEAGHHG*
AnnotationID:1021GeneID:1012
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 14:02:23
Gene Name:fumC2
Confidence Code:2
GeneProduct:fumarate hydratase
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:fumarase
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Energy metabolism
EC Number:
Status:ACTIVE
Pathway:
Citrate cycle (TCA cycle)
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2027




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19169




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1012
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1821
                           PA0854_tr
                           translation of PA0854
                           464
                           99.78
                           99.99
                           0
                           2356.0
     

     
     
63166
                           gb|AAG04243.1|AE004520_6
                           (AE004520) fumarate hydratase [Pseudomonas aeruginosa PAO1]
                           464
                           99.78
                           99.99
                           0
                           2356.0
     

     
     
63167
                           gb|AAO55251.1|
                           (AE016862) fumarate hydratase, class II [Pseudomonas syringae pv. tomato str. DC3000]
                           464
                           84.26
                           91.37
                           0
                           2017.0
     

     
     
63168
                           gb|AAN67375.1|AE016363_7
                           (AE016780) fumarate hydratase, class II [Pseudomonas putida KT2440]
                           464
                           82.97
                           90.73
                           0
                           1986.0
     

     
     
63169
                           dbj|BAC09086.1|
                           (AP005374) fumarate hydratase [Thermosynechococcus elongatus BP-1]
                           469
                           62.68
                           76.54
                           7
                           1516.0
     

     






      

          
GC ORFID: 44014How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0854Glimmer Score: 

          
Start: 236415Stop: 235021

          
Length: 1395


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0854 translation of PA0854Homolog Bit Score 912.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7700 (ORF: BLASTX 774.0), t_PA4470 (ORF: BLASTX 382.0), t_PA5429 (ORF: BLASTX 346.0), t_PA0854 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGGACCGAAACCGATAGCCTGGGCACCATCGAGGTGCCCGACGACGCCTACTGGGGCGCCCAGACC 
CAGCGCTCGCTGGAGAACTTCGCCATCGGCGGCCAGCGCATGCCGCTCGCCGTGATCCACGCCCTGGCGCTG 
ATCAAGAAAGCCGCCGCGCGGGTCAACGACCACCTCGGCGAACTGCCGCCGGAAGTCGCCCGGTTGATTGAA 
CAGGCCGCCGACGAGGTCCTCGCAGGCCGCCACGACGAACACTTCCCGCTGGTGGTCTGGCAGACCGGCAGC 
GGCACCCAGACCAACATGAACGTCAACGAGGTGATCGCCGGCCGCGCCAACGAACTGGCCGGCAATCCGCGC 
GGCGGCAAGTCGCCGGTGCATCCCAACGACCACGTCAACCGCGCGCAGAGTTCCAACGACAGCTTCCCCACC 
GCCATGCACATCGCCGCCGCCAAGGCCGTGCACGAACAATTGCTGCCGGCCATCGCCGAGCTTTCCGGCGGT 
CTCGCCGAACAGTCGGCGCGGCACGCCAGCCTGGTCAAGACCGGGCGCACCCACCTGATGGACGCCACGCCG 
ATCACCTTCGGCCAGGAACTCTCGGCCTTCGTCGCCCAGCTCGACTACGCCGAGCGCGCCATCCGCGCGGCG 
CTGCCGGCGGTCTACCAGTTGGCCCAGGGCGGCACCGCGGTGGGCACCGGGCTCAACGCGCCGAAGGGCTTC 
GCCGACGCCATCGCCGCGGAAATCGCCGCCGAATCGGGCCTGCCCTTCGTCGCCGCGCCGAACAAGTTCGCC 
GCCCTGGCCGGCCACGAGCCTCTGGTCATCCTCTCCGGCGCCCTGAAGAGCCTGGCGGTGGCCCTGATGAAG 
ATCGCCAACGACCTGCGCCTGCTCGGCTCAGGCCCACGCGCCGGCTTCGCCGAGGTGAAGCTGCCGGCCAAC 
GAACCGGGCAGCTCGATCATGCCCGGCAAGGTCAACCCGACCCAGTGCGAGGCGCTGTCGATGCTGGCCTGC 
CAGGTCATGGGCAACGACAGCACGATTTCCTTCGCCGCCAGCCAGGGCCATCTGCAACTCAACGTGTTCAAG 
CCGGTGATCGTCTACAACCTGCTGGAGTCCATCCGCCTGCTCGCCGACGGCTGCCGCAACTTCAACAAGCAT 
TGCGTCGCCGGCCTGGAGCCGGACGCCCGGCGCATGGCCGACCTGCTGGAGCGCGGCCTGATGCTGGTCACC 
GCACTGAACCCGCACATCGGCTACGACAAGGCCGCCGAAATTGCCAAGAAGGCCTACGCCGAAGGCACCACC 
CTGCGCGCCGCGGCGCTGCAGCTGGGCTACCTGGACGAAGCGCAGTTCGACGAATGGGTACGGCCGGAGCAG 
ATGCTGGAGGCCGGCCATCATGGTTGA