ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1011

TrivialName: PA14_54390

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_54390

PAO1 Ortholog Locus: PA0766

Sequence Length: 1425

Protein Length: 474

Start: 4824005

Stop: 4822581

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK11276.1|AF343973_1 (AF343973) MucD [Pseudomonas aeruginosa] Identities = 474/474 (100%), Positives = 474/474 (100%)

Sequence:

ATGCATACCCTAAAACGCTGTATGGCTGCGATGGTGGCCTTGCTGGCCTTGAGCCTGGCGATGACGGCCCGG
GCAGAACTGCCGGACTTCACGCCTTTGGTCGAACAGGCGTCGCCGGCGGTGGTGAATATCAGTACGCGGCAG
AAGCTGCCGGATCGCGCCATGGCGCGCGGGCAGCTGTCGATCCCCGACCTCGAAGGGCTGCCGCCGATGTTC
CGCGACTTCCTCGAGCGCAGCATCCCGCAGGTTCCGCGCAATCCGCGCGGCCAGCAGCGCGAGGCGCAATCG
CTGGGCTCCGGCTTCATCATCTCCAACGACGGCTACATCCTCACCAACAATCACGTCGTGGCCGATGCCGAC
GAGATCCTGGTGCGCCTGTCCGACCGTAGCGAGCACAAGGCCAAGCTGGTCGGCGCGGACCCGCGCAGCGAC
GTGGCGGTGCTGAAGATCGAGGCGAAGAACCTGCCGACCCTGAAACTGGGCGATTCGAACAAGCTGAAAGTG
GGCGAATGGGTCCTGGCCATCGGTTCGCCGTTCGGCTTCGATCACTCGGTCACCGCCGGTATCGTCAGTGCC
AAGGGGCGTAGCCTGCCGAACGAGAGCTACGTACCCTTCATCCAGACCGACGTGGCGATCAACCCGGGCAAC
TCCGGCGGTCCGCTGCTGAACCTGGAGGGCGAAGTGGTCGGCATCAACTCGCAGATCTTCACCCGTTCCGGC
GGCTTCATGGGCCTGTCCTTCGCCATCCCGATCGATGTCGCGCTGAACGTCGCCGACCAGTTGAAGAAAGCC
GGCAAGGTCAGCCGCGGCTGGCTGGGTGTGGTGATCCAGGAAGTGAACAAGGATCTCGCCGAGTCCTTCGGC
CTCGACAAGCCGTCCGGCGCGCTGGTGGCGCAGCTGGTGGAAGACGGTCCGGCGGCCAAGGGCGGCCTGCAG
GTGGGCGATGTGATCCTCAGCCTGAACGGCCAGTCGATCAACGAGTCCGCCGACCTGCCGCACCTGGTGGGC
AACATGAAGCCGGGCGACAAGATCAACCTGGACGTGATTCGCAACGGCCAGCGCAAGTCCTTGAGCATGGCG
GTAGGCAACCTTCCGGACGACGACGAGGAAATCGCCTCGATGGGCGCTCCGGGCGCCGAGCGCAGCAGCAAC
CGCCTGGGCGTGACCGTCGCCGACCTGACCGCCGAGCAGCGCAAGAGCCTGGATATCCAGGGCGGCGTGGTG
ATCAAGGAAGTCCAGGACGGTCCGGCCGCGGTCATCGGCCTGCGTCCGGGCGATGTCATCACCCACCTGGAC
AACAAGGCGGTGACCTCGACCAAGATCTTCGCCGACGTGGCCAAGGCCCTGCCGAAGAACCGTTCGGTTTCG
ATGCGGGTACTGCGCCAGGGGCGCGCCAGCTTCATCACCTTCAAGCTGGCCGAATAA

Translation:

MHTLKRCMAAMVALLALSLAMTARAELPDFTPLVEQASPAVVNISTRQKLPDRAMARGQLSIPDLEGLPPMF
RDFLERSIPQVPRNPRGQQREAQSLGSGFIISNDGYILTNNHVVADADEILVRLSDRSEHKAKLVGADPRSD
VAVLKIEAKNLPTLKLGDSNKLKVGEWVLAIGSPFGFDHSVTAGIVSAKGRSLPNESYVPFIQTDVAINPGN
SGGPLLNLEGEVVGINSQIFTRSGGFMGLSFAIPIDVALNVADQLKKAGKVSRGWLGVVIQEVNKDLAESFG
LDKPSGALVAQLVEDGPAAKGGLQVGDVILSLNGQSINESADLPHLVGNMKPGDKINLDVIRNGQRKSLSMA
VGNLPDDDEEIASMGAPGAERSSNRLGVTVADLTAEQRKSLDIQGGVVIKEVQDGPAAVIGLRPGDVITHLD
NKAVTSTKIFADVAKALPKNRSVSMRVLRQGRASFITFKLAE*

AnnotationID:1020 GeneID:1011

AnnotatorUID: danlee

Modification Date/Time: 2004-04-14 15:03:17

Gene Name: mucD

Confidence Code: 1

GeneProduct: serine protease MucD precursor

Cell Localization: (8) Periplasmic

Synonyms: PA0766

Cell Localization Confidence Code: 2

MolecularFunction:

Functional Category: (23) Secreted Factors (toxins, enzymes, alginate)

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): Cell wall / LPS / capsule; Transcriptional regulators

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
     CD-Length = 347 residues,  96.5% aligned
     Score =  269 bits (689), Expect = 8e-73

Genomic Context:

Comment:

ReferenceID:2025

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19167

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1011

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

63096 gb|AAK11276.1|AF343973_1 (AF343973) MucD [Pseudomonas aeruginosa] 474 99.99 99.99 0 2369.0

1819 PA0766_tr translation of PA0766 474 99.15 99.99 0 2359.0

63097 gb|AAG04155.1|AE004511_8 (AE004511) serine protease MucD precursor [Pseudomonas aeruginosa PAO1] 474 99.15 99.99 0 2359.0

63098 gb|AAC43718.1| (U49151) MucD [Pseudomonas aeruginosa] 474 99.15 99.99 0 2359.0

63099 gb|AAC43676.1| (U32853) MucD [Pseudomonas aeruginosa] 474 99.15 99.99 0 2359.0

GC ORFID: `44013`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0766`	Glimmer Score:
Start: `129902`	Stop: `131326`
Length: `1425`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA0766 translation of PA0766`	Homolog Bit Score `913.0`
Other Homologs: `psyr_15may02_Scaffold5_revised_gene6215 (ORF: BLASTX 691.0), t_PA0766 (ORF: GLIMMER)`
GC ORF Sequence
ATGCATACCCTAAAACGCTGTATGGCTGCGATGGTGGCCTTGCTGGCCTTGAGCCTGGCGATGACGGCCCGG GCAGAACTGCCGGACTTCACGCCTTTGGTCGAACAGGCGTCGCCGGCGGTGGTGAATATCAGTACGCGGCAG AAGCTGCCGGATCGCGCCATGGCGCGCGGGCAGCTGTCGATCCCCGACCTCGAAGGGCTGCCGCCGATGTTC CGCGACTTCCTCGAGCGCAGCATCCCGCAGGTTCCGCGCAATCCGCGCGGCCAGCAGCGCGAGGCGCAATCG CTGGGCTCCGGCTTCATCATCTCCAACGACGGCTACATCCTCACCAACAATCACGTCGTGGCCGATGCCGAC GAGATCCTGGTGCGCCTGTCCGACCGTAGCGAGCACAAGGCCAAGCTGGTCGGCGCGGACCCGCGCAGCGAC GTGGCGGTGCTGAAGATCGAGGCGAAGAACCTGCCGACCCTGAAACTGGGCGATTCGAACAAGCTGAAAGTG GGCGAATGGGTCCTGGCCATCGGTTCGCCGTTCGGCTTCGATCACTCGGTCACCGCCGGTATCGTCAGTGCC AAGGGGCGTAGCCTGCCGAACGAGAGCTACGTACCCTTCATCCAGACCGACGTGGCGATCAACCCGGGCAAC TCCGGCGGTCCGCTGCTGAACCTGGAGGGCGAAGTGGTCGGCATCAACTCGCAGATCTTCACCCGTTCCGGC GGCTTCATGGGCCTGTCCTTCGCCATCCCGATCGATGTCGCGCTGAACGTCGCCGACCAGTTGAAGAAAGCC GGCAAGGTCAGCCGCGGCTGGCTGGGTGTGGTGATCCAGGAAGTGAACAAGGATCTCGCCGAGTCCTTCGGC CTCGACAAGCCGTCCGGCGCGCTGGTGGCGCAGCTGGTGGAAGACGGTCCGGCGGCCAAGGGCGGCCTGCAG GTGGGCGATGTGATCCTCAGCCTGAACGGCCAGTCGATCAACGAGTCCGCCGACCTGCCGCACCTGGTGGGC AACATGAAGCCGGGCGACAAGATCAACCTGGACGTGATTCGCAACGGCCAGCGCAAGTCCTTGAGCATGGCG GTAGGCAACCTTCCGGACGACGACGAGGAAATCGCCTCGATGGGCGCTCCGGGCGCCGAGCGCAGCAGCAAC CGCCTGGGCGTGACCGTCGCCGACCTGACCGCCGAGCAGCGCAAGAGCCTGGATATCCAGGGCGGCGTGGTG ATCAAGGAAGTCCAGGACGGTCCGGCCGCGGTCATCGGCCTGCGTCCGGGCGATGTCATCACCCACCTGGAC AACAAGGCGGTGACCTCGACCAAGATCTTCGCCGACGTGGCCAAGGCCCTGCCGAAGAACCGTTCGGTTTCG ATGCGGGTACTGCGCCAGGGGCGCGCCAGCTTCATCACCTTCAAGCTGGCCGAATAA