ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1010

TrivialName: PA14_67520

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_67520

PAO1 Ortholog Locus: PA5113

Sequence Length: 1395

Protein Length: 464

Start: 6029994

Stop: 6028600

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08498.1|AE004924_3 (AE004924) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 463/464 (99%), Positives = 463/464 (99%)

Sequence:

ATGACGCGCTCCTTTTCGTTCAGAACCGCCGGCCTGCTCCTGCTGGGCGCCTGCCTGTCCCTGCCGCTGTCG
GCGAAGGAGTCTGCCGAAGGTTTCAGCCGCCAGGTGGCGCTGTCGCTGCAGGGCGAAGGTCCCTGGTATCGC
CTGAGCATCCCGATGAGCGTGCAGTTGTCGGCTGCCCATGCCGACCTGCGCGACCTGCGGGTCTTCGATGCC
GAAGGCGAGGCCTTGCCCTACGCCCTGGTGGCCGGCAGCGAGCGCCAGGCCAGCACGCCGCATGAGGCCGAG
GTGCGGCTGTTCCCGTTGCGAGGCACGTCCGCCGCCGACGCGACGCAACCGAACCTGCGGGTGCAGCGCAAC
ACCAGCGGCACCATAGTCGAGGTGCTGCCGGAAAACGCCGGGCCGGCTGCCGAGACTTTGCGCGGCTGGCTG
ATCGACGCGAGCGCGGTGACGTTTCCCCTGGAGCGCCTGCGGCTGGACTGGAGCAGCCCGGAGGAGGGCTTC
CAGCGCTTCTCCGTGGAAGCCAGCGACGACCTCGAGCATTGGCAGGCCTGGGGTGACGGACAGATCGCCCGC
TTGACCTTCAACGGCGAACGCATCGACGTCAGCGAGGTCAAGCTTCCCGGCCGCCAGGCCCGCTACCTGCGT
CTGGCCTGGCCGGCCGGGGCAACCGCGGCAGACCTTCATGGCGCCCGCCTGCAAGGCAGCACGCGGAGCACC
GAGCCGGCGCCGATGATCTGGTCCGAGCCGCTGGCCGGGCGCCAGGCGGGGGACGGCGAGTACCGCTGGCAG
TTGCCGCTGGCGTTGCCGTTGCAGCGGGTGCGGGTGTCCCTGGAGCAGGCGCTGACCCACACCATCGTCCCG
GTGGAACTGTCCGGCCGTGATCGTACGGAGAACGCTTCGCCGCGCCGGGAGGCCGCCTGGAGCAGCCTGGCA
CGCGGGGTCCTCTACCGGCTGCCGATCGACGGCCGCAACGTACAGCAGAACGAGCTGGAACTGCCGGGCTGG
GCGGTGCGCGAGCTGCGTCTGCAGGTGGACCAACGAGGTACCGGCCTGGGCCCGGAGGTCCCGTCCCTGAGT
GTCGGCCTGCCGGCCAGCGAACTGGTGTTCCTAGTGCGCGGCAGCCCGCCGTACCGGCTGGCGTTCGGCAAG
CCCGGCGCGCAGTCGGCGGCGCTGCCGCTCGGCGTACTGATTCCCGGCTATACCGAGAGCAAGCGCGCCACC
CTGGGTAGCGCCAGCCTGGGCGAACCGCTGGAGGTGGCCATGGCGGCCGCGGCGCCGGCACCGGGTAGCGAC
TGGAAGAAGATCGGCCTGTGGGCGGTACTTCTGCTGGGGGTCGCTCTGCTGGTAATAATGGCAATGAGCCTG
CTGCGTTCCTCGCCGAACAAGCCATGA

Translation:

MTRSFSFRTAGLLLLGACLSLPLSAKESAEGFSRQVALSLQGEGPWYRLSIPMSVQLSAAHADLRDLRVFDA
EGEALPYALVAGSERQASTPHEAEVRLFPLRGTSAADATQPNLRVQRNTSGTIVEVLPENAGPAAETLRGWL
IDASAVTFPLERLRLDWSSPEEGFQRFSVEASDDLEHWQAWGDGQIARLTFNGERIDVSEVKLPGRQARYLR
LAWPAGATAADLHGARLQGSTRSTEPAPMIWSEPLAGRQAGDGEYRWQLPLALPLQRVRVSLEQALTHTIVP
VELSGRDRTENASPRREAAWSSLARGVLYRLPIDGRNVQQNELELPGWAVRELRLQVDQRGTGLGPEVPSLS
VGLPASELVFLVRGSPPYRLAFGKPGAQSAALPLGVLIPGYTESKRATLGSASLGEPLEVAMAAAAPAPGSD
WKKIGLWAVLLLGVALLVIMAMSLLRSSPNKP*

AnnotationID:1019 GeneID:1010

AnnotatorUID: diggins

Modification Date/Time: 2005-03-15 08:08:16

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA5113

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:2023

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19165

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1010

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1818 PA5113_tr translation of PA5113 464 99.78 99.78 0 2362.0

63094 gb|AAG08498.1|AE004924_3 (AE004924) hypothetical protein PA5113 [Pseudomonas aeruginosa PAO1] 464 99.78 99.78 0 2362.0

63095 gb|AAO58593.1| (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 472 42.58 60.16 26 947.0

GC ORFID: `44012`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5113`	Glimmer Score:
Start: `5293679`	Stop: `5292285`
Length: `1395`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5113 translation of PA5113`	Homolog Bit Score `914.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene3812 (ORF: BLASTX 368.0), t_PA5113 (ORF: GLIMMER)`
GC ORF Sequence
ATGACGCGCTCCTTTTCGTTCAGAACCGCCGGCCTGCTCCTGCTGGGCGCCTGCCTGTCCCTGCCGCTGTCG GCGAAGGAGTCTGCCGAAGGTTTCAGCCGCCAGGTGGCGCTGTCGCTGCAGGGCGAAGGTCCCTGGTATCGC CTGAGCATCCCGATGAGCGTGCAGTTGTCGGCTGCCCATGCCGACCTGCGCGACCTGCGGGTCTTCGATGCC GAAGGCGAGGCCTTGCCCTACGCCCTGGTGGCCGGCAGCGAGCGCCAGGCCAGCACGCCGCATGAGGCCGAG GTGCGGCTGTTCCCGTTGCGAGGCACGTCCGCCGCCGACGCGACGCAACCGAACCTGCGGGTGCAGCGCAAC ACCAGCGGCACCATAGTCGAGGTGCTGCCGGAAAACGCCGGGCCGGCTGCCGAGACTTTGCGCGGCTGGCTG ATCGACGCGAGCGCGGTGACGTTTCCCCTGGAGCGCCTGCGGCTGGACTGGAGCAGCCCGGAGGAGGGCTTC CAGCGCTTCTCCGTGGAAGCCAGCGACGACCTCGAGCATTGGCAGGCCTGGGGTGACGGACAGATCGCCCGC TTGACCTTCAACGGCGAACGCATCGACGTCAGCGAGGTCAAGCTTCCCGGCCGCCAGGCCCGCTACCTGCGT CTGGCCTGGCCGGCCGGGGCAACCGCGGCAGACCTTCATGGCGCCCGCCTGCAAGGCAGCACGCGGAGCACC GAGCCGGCGCCGATGATCTGGTCCGAGCCGCTGGCCGGGCGCCAGGCGGGGGACGGCGAGTACCGCTGGCAG TTGCCGCTGGCGTTGCCGTTGCAGCGGGTGCGGGTGTCCCTGGAGCAGGCGCTGACCCACACCATCGTCCCG GTGGAACTGTCCGGCCGTGATCGTACGGAGAACGCTTCGCCGCGCCGGGAGGCCGCCTGGAGCAGCCTGGCA CGCGGGGTCCTCTACCGGCTGCCGATCGACGGCCGCAACGTACAGCAGAACGAGCTGGAACTGCCGGGCTGG GCGGTGCGCGAGCTGCGTCTGCAGGTGGACCAACGAGGTACCGGCCTGGGCCCGGAGGTCCCGTCCCTGAGT GTCGGCCTGCCGGCCAGCGAACTGGTGTTCCTAGTGCGCGGCAGCCCGCCGTACCGGCTGGCGTTCGGCAAG CCCGGCGCGCAGTCGGCGGCGCTGCCGCTCGGCGTACTGATTCCCGGCTATACCGAGAGCAAGCGCGCCACC CTGGGTAGCGCCAGCCTGGGCGAACCGCTGGAGGTGGCCATGGCGGCCGCGGCGCCGGCACCGGGTAGCGAC TGGAAGAAGATCGGCCTGTGGGCGGTACTTCTGCTGGGGGTCGCTCTGCTGGTAATAATGGCAATGAGCCTG CTGCGTTCCTCGCCGAACAAGCCATGA