ViewGene
Locus Name:
GeneID:
Location:

GeneID:101
TrivialName: PA14_29940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29940
PAO1 Ortholog Locus:PA2642
Sequence Length:2718
Protein Length:905
Start: 2594184
Stop: 2591467
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06030.1|AE004693_1 (AE004693) NADH dehydrogenase I chain G [Pseudomonas aeruginosa PAO1]
Identities = 900/905 (99%), Positives = 903/905 (99%)
Sequence:
ATGGCCACTATCCACGTAGACGGCAAGACGCTCGAAGTCGATGGTGCAGACAACCTCCTGCAGGCCTGTCTG
TCCCTCGGTCTCGACATTCCCTACTTCTGCTGGCACCCGGCGCTCGGTAGCGTCGGCGCCTGCCGCCAGTGC
GCGGTGAAGCAGTACACCGACGAGAACGACAAGCGTGGTCGCCTCGTCATGTCCTGCATGACCCCCGCCACC
GACAACACCTGGATCTCCATCGAAGACGAAGAGGCCAAGCAGTTCCGCGCCAGCGTCGTCGAATGGCTGATG
ACCAACCACCCGCACGACTGCCCGGTGTGCGAGGAAGGCGGTCACTGCCACCTGCAGGACATGACGGTGATG
ACCGGCCACAACGAGCGCCGGTACCGCTTCACCAAGCGCACCCACCAGAACCAGGAACTCGGCCCGTTCATC
GCCCACGAGATGAACCGCTGCATCGCCTGCTACCGCTGCGTGCGCTACTACAAGGACTACGCCGGCGGCACC
GACCTCGGCGTCTACGGCGCCCACGACAACGTCTACTTCGGACGGGTCGAGGACGGCGTGCTGGAAAGCGAG
TTCTCCGGCAACCTCACCGAGGTCTGCCCCACCGGCGTGTTCACCGACAAGACCCACTCCGAGCGCTACAAC
CGCAAGTGGGACATGCAGTTCGCCCCGAGCATCTGCCACGGCTGCTCCAGCGGCTGCAACATCAGCCCCGGC
GAGCGCTACGGCGAGATCCGCCGCATCGAGAACCGCTACAACGGCTCGGTCAACCACTACTTCCTCTGCGAC
CGCGGTCGCTTCGGCTACGGCTACGTCAACCGCGAAGACCGTCCGCGCCAGCCGCTGCTGGTGCTGAGCAAG
CAGAAGCTGAGCCTGGACGGCGCCCTCGACCAGGCCGCCGCCCTGCTGAAGGAGCGCAAGGTGGTCGGCATC
GGTTCGCCGCGCGCCAGCCTGGAAAGCAACTTCGCCCTGCGCGAGCTGGTTGGCGAAGGCAACTTCTACAGC
GGCATCAACGAAGGCGAGCTCGACCGCCTGCGCCTGATCCTGCAGGTCATGCAGGAAGGCCCGCTGCCGGTG
CCGAGCATCCGCGACATCGAGGACCACGACGCGGTCTTCGTCCTCGGCGAGGACCTGACCCAGACCGCCGCC
CGCATCGCCCTGGCCCTGCGCCAGTCGGTGAAGGGCAAGGCCGTCGAGATGGCCGCCGACATGAAGGTCCAG
CCGTGGCTCGACGCCGCGGTGAAGAACATCGCCCAGCACGCGCAGAACCCGCTGTTCATCGCCAGCGTCAGC
GCGACCCGCCTCGACGACGTGGCCGAGGAAACCGTCCACGCCGCACCGGACGACCTCGCCCGCCTCGGCTTC
GCCGTGGCCCACGCGATCGACCCGAGCGCTCCAGCCGTGGCCGACCTCGACCCGCAGGCCCAGGCCTTCGCC
CAGCGCATCGCCGATGCCCTGCTGGTGGCCAAGCGTCCGTTGGTGGTGTCCGGCAACTCGCTGGGCAACAAG
GCACTGATCGAAGCCGCGGCGAACATCGCCAAGGCCCTCAAGCAGCGCGAGAAGAACGGTTCCATCAGCCTG
GTGGTCGGCGAAGCCAACAGCCTCGGCCTGGCGCTCTTCGGCGGCGACTCCGTGGAAGCCGCGCTCGAGCGA
CTGACCTCCGGACAGGCCGACGCCGTGGTGGTGCTGGAGAACGATCTCTACCGCCGCACCGACGCCGCCCGT
GTCGACGCAGCCCTGGCGGCGGCCAGGGTGGTGATCGTCGCCGATCACCAGCAGACCGCCACCACCGCCAAG
GCGCACCTGGTGCTGCCGGCGGCCAGCTTCGCCGAAGGCGACGGCACCCTGGTCAGCCAGGAAGGCCGCGCC
CAGCGCTTCTTCCAGGTGTTCGACCCGACCTACTACGACGCCAAGAACATGGTCCGCGAGGGCTGGCGCTGG
CTGCATGCGATCCACAGCACCCTGCAAGGCAAGCGCGTCGACTGGACCCAGCTGGACCACGTCACCGAAGCC
GTGGCCGAGGCCAAGCCGATCCTGGCCGGTATCCGCGACGCCGCACCGGCCGCCTCGTTCCGCATCAAGGGC
CTCAAGCTGGCCCGCGAACCGCACCGCTACAGCGGGCGCACCGCCATGCGCGCCAACATCAGCGTGCACGAG
CCGCGCACCCCGCAGGACATCGACTCGGCGTTCGCCTTCTCCATGGAAGGCTACTCCGGCAGCCAGGAAGAC
CGTCAGCAGATCCCGTTCGCCTGGTCGCCGGGCTGGAACTCGCCGCAGGCCTGGAACAAGTTCCAGGACGAG
GTCGGCGGCCACCTGCGCGCCGGCGACCCCGGCGTGCGCCTGATCGAACCGAAGGGCGAAGGCCTCGACTGG
TTCCAGGCCGTGCCGGTGCCGTTCAGCGCCAAGGCCGACAGCTGGAAGGTAGTGCCTCTGTACCACCTGTTC
GGTAGCGAGGAAAACAGCTCGCGGGCCGCGCCGATCCAGCAGCGCATCCCGGAGACCTACGTCGCCCTGTCC
AAGGAAGACGCGGACCGCCTCGGCGTCAACGACGGCGCGACCCTCGGCTTCCAGCTCAAGGGCCAGGCCCTG
CGCCTGCCGCTGCGCATCGATGAACAACTCGGCGCCGGCCTGATCGGCCTGCCGGTCGGCTTCGCCGGCATC
CCGGCGGCGATCGCCGGCTGCTCCGTGGAAGGTCTGCAGGAGGCTGCACAATGA
Translation:
MATIHVDGKTLEVDGADNLLQACLSLGLDIPYFCWHPALGSVGACRQCAVKQYTDENDKRGRLVMSCMTPAT
DNTWISIEDEEAKQFRASVVEWLMTNHPHDCPVCEEGGHCHLQDMTVMTGHNERRYRFTKRTHQNQELGPFI
AHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRVEDGVLESEFSGNLTEVCPTGVFTDKTHSERYN
RKWDMQFAPSICHGCSSGCNISPGERYGEIRRIENRYNGSVNHYFLCDRGRFGYGYVNREDRPRQPLLVLSK
QKLSLDGALDQAAALLKERKVVGIGSPRASLESNFALRELVGEGNFYSGINEGELDRLRLILQVMQEGPLPV
PSIRDIEDHDAVFVLGEDLTQTAARIALALRQSVKGKAVEMAADMKVQPWLDAAVKNIAQHAQNPLFIASVS
ATRLDDVAEETVHAAPDDLARLGFAVAHAIDPSAPAVADLDPQAQAFAQRIADALLVAKRPLVVSGNSLGNK
ALIEAAANIAKALKQREKNGSISLVVGEANSLGLALFGGDSVEAALERLTSGQADAVVVLENDLYRRTDAAR
VDAALAAARVVIVADHQQTATTAKAHLVLPAASFAEGDGTLVSQEGRAQRFFQVFDPTYYDAKNMVREGWRW
LHAIHSTLQGKRVDWTQLDHVTEAVAEAKPILAGIRDAAPAASFRIKGLKLAREPHRYSGRTAMRANISVHE
PRTPQDIDSAFAFSMEGYSGSQEDRQQIPFAWSPGWNSPQAWNKFQDEVGGHLRAGDPGVRLIEPKGEGLDW
FQAVPVPFSAKADSWKVVPLYHLFGSEENSSRAAPIQQRIPETYVALSKEDADRLGVNDGATLGFQLKGQAL
RLPLRIDEQLGAGLIGLPVGFAGIPAAIAGCSVEGLQEAAQ*
AnnotationID:111GeneID:101
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:59
Gene Name:nuoG
Confidence Code:2
GeneProduct:NADH dehydrogenase I chain G
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1034
Secondary Functional Category(ies):
EC Number:1.6.5.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56848.1| (AE016868) NADH dehydrogenase I, G subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 905

 Score = 1517 bits (3928), Expect = 0.0
 Identities = 735/905 (81%), Positives = 812/905 (89%)

>gb|AAN69707.1|AE016607_1 (AE016789) NADH dehydrogenase I, G subunit [Pseudomonas putida
           KT2440]
          Length = 904

 Score = 1499 bits (3881), Expect = 0.0
 Identities = 734/905 (81%), Positives = 801/905 (88%), Gaps = 1/905 (0%)

>gb|AAC75343.1| (AE000317) NADH dehydrogenase I chain G [Escherichia coli K12]
          Length = 910

 Score = 1258 bits (3255), Expect = 0.0
 Identities = 610/908 (67%), Positives = 724/908 (79%), Gaps = 3/908 (0%)






 
Structural Features:
COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone 
oxidoreductase 75 kD subunit (chain G) 
[Energy production and conversion]
CD-Length = 693 residues, 100.0% aligned
Score =  669 bits (1726), Expect = 0.0
Identities = 306/784 (39%), Positives = 389/784 (49%), Gaps = 95/784 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:205




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17347




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33221




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:101_cdd.html


    		




 
URL:

















    ReferenceID:34577




  
Author/Investigator(s):
        Camacho Carvajal MM, Wijfjes AH, Mulders IH, Lugtenberg BJ, Bloemberg GV.





  
Title:
        Characterization of NADH dehydrogenases of Pseudomonas fluorescens WCS365 and their role in competitive root colonization.




  
PubMed:
        12118882


MedLine:
        




    
Source:
Mol Plant Microbe Interact. 2002 Jul;15(7):662-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12118882

















    ReferenceID:34589




  
Author/Investigator(s):
        Falk-Krzesinski HJ, Wolfe AJ.





  
Title:
        Genetic analysis of the nuo locus, which encodes the proton-translocating NADH dehydrogenase in Escherichia coli.




  
PubMed:
        9495756


MedLine:
        




    
Source:
J Bacteriol. 1998 Mar;180(5):1174-84.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9495756









           
Homologs By Global Alignment 

           

       



     
Gene ID:101
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198
                           PA2642_tr
                           translation of PA2642
                           905
                           99.44
                           99.77
                           0
                           4711.0
     

     
     
14714
                           gb|AAG06030.1|AE004693_1
                           (AE004693) NADH dehydrogenase I chain G [Pseudomonas aeruginosa PAO1]
                           905
                           99.44
                           99.77
                           0
                           4711.0
     

     
     
14715
                           gb|AAO56848.1|
                           (AE016868) NADH dehydrogenase I, G subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           905
                           81.21
                           89.72
                           0
                           3928.0
     

     
     
14717
                           gb|AAN69707.1|AE016607_1
                           (AE016789) NADH dehydrogenase I, G subunit [Pseudomonas putida KT2440]
                           905
                           81.10
                           88.50
                           1
                           3883.0
     

     
     
14716
                           gb|AAF97803.1|AF281148_7
                           (AF281148) NADH dehydrogenase I subunit G [Pseudomonas fluorescens]
                           905
                           80.99
                           89.83
                           1
                           3909.0
     

     






      

          
GC ORFID: 43103How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2642Glimmer Score: 

          
Start: 2359742Stop: 2362459

          
Length: 2718


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2642 translation of PA2642Homolog Bit Score 1819.0

          
Other Homologs:  t_PA2642 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACTATCCACGTAGACGGCAAGACGCTCGAAGTCGATGGTGCAGACAACCTCCTGCAGGCCTGTCTG 
TCCCTCGGTCTCGACATTCCCTACTTCTGCTGGCACCCGGCGCTCGGTAGCGTCGGCGCCTGCCGCCAGTGC 
GCGGTGAAGCAGTACACCGACGAGAACGACAAGCGTGGTCGCCTCGTCATGTCCTGCATGACCCCCGCCACC 
GACAACACCTGGATCTCCATCGAAGACGAAGAGGCCAAGCAGTTCCGCGCCAGCGTCGTCGAATGGCTGATG 
ACCAACCACCCGCACGACTGCCCGGTGTGCGAGGAAGGCGGTCACTGCCACCTGCAGGACATGACGGTGATG 
ACCGGCCACAACGAGCGCCGGTACCGCTTCACCAAGCGCACCCACCAGAACCAGGAACTCGGCCCGTTCATC 
GCCCACGAGATGAACCGCTGCATCGCCTGCTACCGCTGCGTGCGCTACTACAAGGACTACGCCGGCGGCACC 
GACCTCGGCGTCTACGGCGCCCACGACAACGTCTACTTCGGACGGGTCGAGGACGGCGTGCTGGAAAGCGAG 
TTCTCCGGCAACCTCACCGAGGTCTGCCCCACCGGCGTGTTCACCGACAAGACCCACTCCGAGCGCTACAAC 
CGCAAGTGGGACATGCAGTTCGCCCCGAGCATCTGCCACGGCTGCTCCAGCGGCTGCAACATCAGCCCCGGC 
GAGCGCTACGGCGAGATCCGCCGCATCGAGAACCGCTACAACGGCTCGGTCAACCACTACTTCCTCTGCGAC 
CGCGGTCGCTTCGGCTACGGCTACGTCAACCGCGAAGACCGTCCGCGCCAGCCGCTGCTGGTGCTGAGCAAG 
CAGAAGCTGAGCCTGGACGGCGCCCTCGACCAGGCCGCCGCCCTGCTGAAGGAGCGCAAGGTGGTCGGCATC 
GGTTCGCCGCGCGCCAGCCTGGAAAGCAACTTCGCCCTGCGCGAGCTGGTTGGCGAAGGCAACTTCTACAGC 
GGCATCAACGAAGGCGAGCTCGACCGCCTGCGCCTGATCCTGCAGGTCATGCAGGAAGGCCCGCTGCCGGTG 
CCGAGCATCCGCGACATCGAGGACCACGACGCGGTCTTCGTCCTCGGCGAGGACCTGACCCAGACCGCCGCC 
CGCATCGCCCTGGCCCTGCGCCAGTCGGTGAAGGGCAAGGCCGTCGAGATGGCCGCCGACATGAAGGTCCAG 
CCGTGGCTCGACGCCGCGGTGAAGAACATCGCCCAGCACGCGCAGAACCCGCTGTTCATCGCCAGCGTCAGC 
GCGACCCGCCTCGACGACGTGGCCGAGGAAACCGTCCACGCCGCACCGGACGACCTCGCCCGCCTCGGCTTC 
GCCGTGGCCCACGCGATCGACCCGAGCGCTCCAGCCGTGGCCGACCTCGACCCGCAGGCCCAGGCCTTCGCC 
CAGCGCATCGCCGATGCCCTGCTGGTGGCCAAGCGTCCGTTGGTGGTGTCCGGCAACTCGCTGGGCAACAAG 
GCACTGATCGAAGCCGCGGCGAACATCGCCAAGGCCCTCAAGCAGCGCGAGAAGAACGGTTCCATCAGCCTG 
GTGGTCGGCGAAGCCAACAGCCTCGGCCTGGCGCTCTTCGGCGGCGACTCCGTGGAAGCCGCGCTCGAGCGA 
CTGACCTCCGGACAGGCCGACGCCGTGGTGGTGCTGGAGAACGATCTCTACCGCCGCACCGACGCCGCCCGT 
GTCGACGCAGCCCTGGCGGCGGCCAGGGTGGTGATCGTCGCCGATCACCAGCAGACCGCCACCACCGCCAAG 
GCGCACCTGGTGCTGCCGGCGGCCAGCTTCGCCGAAGGCGACGGCACCCTGGTCAGCCAGGAAGGCCGCGCC 
CAGCGCTTCTTCCAGGTGTTCGACCCGACCTACTACGACGCCAAGAACATGGTCCGCGAGGGCTGGCGCTGG 
CTGCATGCGATCCACAGCACCCTGCAAGGCAAGCGCGTCGACTGGACCCAGCTGGACCACGTCACCGAAGCC 
GTGGCCGAGGCCAAGCCGATCCTGGCCGGTATCCGCGACGCCGCACCGGCCGCCTCGTTCCGCATCAAGGGC 
CTCAAGCTGGCCCGCGAACCGCACCGCTACAGCGGGCGCACCGCCATGCGCGCCAACATCAGCGTGCACGAG 
CCGCGCACCCCGCAGGACATCGACTCGGCGTTCGCCTTCTCCATGGAAGGCTACTCCGGCAGCCAGGAAGAC 
CGTCAGCAGATCCCGTTCGCCTGGTCGCCGGGCTGGAACTCGCCGCAGGCCTGGAACAAGTTCCAGGACGAG 
GTCGGCGGCCACCTGCGCGCCGGCGACCCCGGCGTGCGCCTGATCGAACCGAAGGGCGAAGGCCTCGACTGG 
TTCCAGGCCGTGCCGGTGCCGTTCAGCGCCAAGGCCGACAGCTGGAAGGTAGTGCCTCTGTACCACCTGTTC 
GGTAGCGAGGAAAACAGCTCGCGGGCCGCGCCGATCCAGCAGCGCATCCCGGAGACCTACGTCGCCCTGTCC 
AAGGAAGACGCGGACCGCCTCGGCGTCAACGACGGCGCGACCCTCGGCTTCCAGCTCAAGGGCCAGGCCCTG 
CGCCTGCCGCTGCGCATCGATGAACAACTCGGCGCCGGCCTGATCGGCCTGCCGGTCGGCTTCGCCGGCATC 
CCGGCGGCGATCGCCGGCTGCTCCGTGGAAGGTCTGCAGGAGGCTGCACAATGA