ViewGene
Locus Name:
GeneID:
Location:

GeneID:1009
TrivialName: PA14_70580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70580
PAO1 Ortholog Locus:PA5346
Sequence Length:1410
Protein Length:469
Start: 6288060
Stop: 6289469
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08731.1|AE004947_1 (AE004947) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 466/469 (99%), Positives = 467/469 (99%)
Sequence:
ATGACAGAAGCCGCCCTGGCCTCCGCCGATGCTCCGCACGCCCCCCAGGTCATCCTCCAGCTGCTCGCCAAG
CTAGGCATCGCCTGCCGCGAGGTCAGCGACAGCGCGGAGCTGCCTGCCGCCCGCCGGGTCCAGGCGGTGCTG
CTGGACGACGCCGTCGGCACCCTGCTGGTGCTGTTCCCGCAGAGCCAGTTGCTGGACCTTGCCCGGCTCACC
GAACTGACCGGCCGCAAGCTGCTGGCGATCGAGCCCGAGCGCCTGGAACGAATGCTCGGCAAGCACGAGCTG
CACCGCCTGCCGGCGTTGCCGCCCCTGACCAGTTCGCCCTGCCTGTACGACGAGCGCCTGTTGCAGGAACCG
CGCCTGCTGATCGAGTCCGGCCAGCCCGGCATCCTCCTGGAGATCGCCAGCAACGACTTCCGCGGCCTGCTG
GGCAAGGCCAGCGCCGCGCGCTTCGGCGAACCGCTGGAAAACATCAACCTGAACCTTGACCGCCCGGACGAC
GACCGCGCGGAAATCAGCCAGGCCGTGCAGGCCTTCACCGCCCGGCGCATCCAGCAGCGCCTGGAGCAGACC
ATCGAGATTCCACCGCTGCCGCAGACGGCGCAGAAGATCATCAAGCTGCGGGTCGACCCCAACGCCAGCGTC
GACGACATCACCGGCCTGGTGGAAACCGATCCGGCGCTCGCCGCCCAGGTGGTCAGTTGGGCGGCCTCGCCC
TACTACGCCGCGCCGGGCAAGATCCGCTCGGTGGAAGACGCGATCGTCCGCGTCCTCGGTTTCGACCTGGTG
ATCAACCTGGCTCTCGGCCTCGCCCTGGGCAAGAGCCTGAGCCTGCCCAAGGACCAGCCGCAGCAGGCCACG
CCCTACTGGCAGCAGGCGATCTACACCGCCGCGGTGATCGAGGGCCTGACCCGCGCCATGCCGCGCGAACTG
CGCCCGGAGTCCGGCCTGAGCTACCTGGGCGGCCTGCTGCACAATTTCGGCTACCTGGTCCTGGCGCATGTC
TTCCCGCCGCATTTCTCGCTGATCTGCCGGCACCTGGAGGTCAACCCGCACCTCGGCCATGCCTATATCGAA
CAGCACCTGCTGGGGATCACCCGCGAGCAGATCGGCGCCTGGCTGATGCGCGTCTGGGACATGCCTGACGAC
CTCTATTGCGCCCTGCGCTTCCAGCAGGCCCCCAGCTACACCGGGCCGAACGCGGTCTACGCCAACCTGATC
TGCCTGACCAACCGGTTGCTGCGCAACAGCGGCATCGGCGATGGCCCGCAGCAAGCGATTCCGGCGGCATTG
TACGAGCGCCTGGGGATCACCCCAGAGAAGGCCGGGGACGCCGTGAAAAAGGTGCTGGAAGCGGAAGCGGCC
CTGCGCGAACTGGCGGCCCAGTTCAATCGCTTGCCGGGGTGA
Translation:
MTEAALASADAPHAPQVILQLLAKLGIACREVSDSAELPAARRVQAVLLDDAVGTLLVLFPQSQLLDLARLT
ELTGRKLLAIEPERLERMLGKHELHRLPALPPLTSSPCLYDERLLQEPRLLIESGQPGILLEIASNDFRGLL
GKASAARFGEPLENINLNLDRPDDDRAEISQAVQAFTARRIQQRLEQTIEIPPLPQTAQKIIKLRVDPNASV
DDITGLVETDPALAAQVVSWAASPYYAAPGKIRSVEDAIVRVLGFDLVINLALGLALGKSLSLPKDQPQQAT
PYWQQAIYTAAVIEGLTRAMPRELRPESGLSYLGGLLHNFGYLVLAHVFPPHFSLICRHLEVNPHLGHAYIE
QHLLGITREQIGAWLMRVWDMPDDLYCALRFQQAPSYTGPNAVYANLICLTNRLLRNSGIGDGPQQAIPAAL
YERLGITPEKAGDAVKKVLEAEAALRELAAQFNRLPG*
AnnotationID:1018GeneID:1009
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 06:06:14
Gene Name:
Confidence Code:3
GeneProduct:putative signal transduction protein
Cell Localization:()
Synonyms:PA5346
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1639
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1639, Predicted signal transduction protein [Signal transduction mechanisms]
CD-Length = 289 residues, 100.0% aligned
Score =  281 bits (719), Expect = 2e-76
Identities = 109/294 (37%), Positives = 146/294 (49%), Gaps = 5/294 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2021




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19163




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34715




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1009_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1009
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1817
                           PA5346_tr
                           translation of PA5346
                           469
                           99.36
                           99.57
                           0
                           2365.0
     

     
     
63090
                           gb|AAG08731.1|AE004947_1
                           (AE004947) hypothetical protein PA5346 [Pseudomonas aeruginosa PAO1]
                           469
                           99.36
                           99.57
                           0
                           2365.0
     

     
     
63091
                           gb|AAO53618.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           469
                           72.70
                           84.22
                           4
                           1741.0
     

     
     
63092
                           gb|AAN70876.1|AE016732_1
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           469
                           71.42
                           81.66
                           2
                           1694.0
     

     
     
63093
                           gb|AAM54734.1|
                           (AY116079) PA5346-like protein [Azotobacter vinelandii]
                           478
                           42.25
                           55.85
                           114
                           962.0
     

     






      

          
GC ORFID: 44011How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5346Glimmer Score: 

          
Start: 5551749Stop: 5553158

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5346 translation of PA5346Homolog Bit Score 915.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3951 (ORF: BLASTX 682.0), t_PA5346 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGAAGCCGCCCTGGCCTCCGCCGATGCTCCGCACGCCCCCCAGGTCATCCTCCAGCTGCTCGCCAAG 
CTAGGCATCGCCTGCCGCGAGGTCAGCGACAGCGCGGAGCTGCCTGCCGCCCGCCGGGTCCAGGCGGTGCTG 
CTGGACGACGCCGTCGGCACCCTGCTGGTGCTGTTCCCGCAGAGCCAGTTGCTGGACCTTGCCCGGCTCACC 
GAACTGACCGGCCGCAAGCTGCTGGCGATCGAGCCCGAGCGCCTGGAACGAATGCTCGGCAAGCACGAGCTG 
CACCGCCTGCCGGCGTTGCCGCCCCTGACCAGTTCGCCCTGCCTGTACGACGAGCGCCTGTTGCAGGAACCG 
CGCCTGCTGATCGAGTCCGGCCAGCCCGGCATCCTCCTGGAGATCGCCAGCAACGACTTCCGCGGCCTGCTG 
GGCAAGGCCAGCGCCGCGCGCTTCGGCGAACCGCTGGAAAACATCAACCTGAACCTTGACCGCCCGGACGAC 
GACCGCGCGGAAATCAGCCAGGCCGTGCAGGCCTTCACCGCCCGGCGCATCCAGCAGCGCCTGGAGCAGACC 
ATCGAGATTCCACCGCTGCCGCAGACGGCGCAGAAGATCATCAAGCTGCGGGTCGACCCCAACGCCAGCGTC 
GACGACATCACCGGCCTGGTGGAAACCGATCCGGCGCTCGCCGCCCAGGTGGTCAGTTGGGCGGCCTCGCCC 
TACTACGCCGCGCCGGGCAAGATCCGCTCGGTGGAAGACGCGATCGTCCGCGTCCTCGGTTTCGACCTGGTG 
ATCAACCTGGCTCTCGGCCTCGCCCTGGGCAAGAGCCTGAGCCTGCCCAAGGACCAGCCGCAGCAGGCCACG 
CCCTACTGGCAGCAGGCGATCTACACCGCCGCGGTGATCGAGGGCCTGACCCGCGCCATGCCGCGCGAACTG 
CGCCCGGAGTCCGGCCTGAGCTACCTGGGCGGCCTGCTGCACAATTTCGGCTACCTGGTCCTGGCGCATGTC 
TTCCCGCCGCATTTCTCGCTGATCTGCCGGCACCTGGAGGTCAACCCGCACCTCGGCCATGCCTATATCGAA 
CAGCACCTGCTGGGGATCACCCGCGAGCAGATCGGCGCCTGGCTGATGCGCGTCTGGGACATGCCTGACGAC 
CTCTATTGCGCCCTGCGCTTCCAGCAGGCCCCCAGCTACACCGGGCCGAACGCGGTCTACGCCAACCTGATC 
TGCCTGACCAACCGGTTGCTGCGCAACAGCGGCATCGGCGATGGCCCGCAGCAAGCGATTCCGGCGGCATTG 
TACGAGCGCCTGGGGATCACCCCAGAGAAGGCCGGGGACGCCGTGAAAAAGGTGCTGGAAGCGGAAGCGGCC 
CTGCGCGAACTGGCGGCCCAGTTCAATCGCTTGCCGGGGTGA