ViewGene
Locus Name:
GeneID:
Location:

GeneID:1007
TrivialName: PA14_17780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17780
PAO1 Ortholog Locus:PA3595
Sequence Length:1410
Protein Length:469
Start: 1528250
Stop: 1526841
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06983.1|AE004780_2 (AE004780) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 466/469 (99%), Positives = 466/469 (99%)
Sequence:
ATGCCGCGCACGCCCTCTCCCGAAGACGCCGACCTGCACAAGAAAGCCCGCAGGGCCGGTATCGCCTCCTTC
ATCGGCACCACCATCGAGTGGTACGACTTCTACATCTACGGCCTGGCCGCCGCCCTGGTGTTCGGCAAGGTA
TTCTTCCCCGCCGACATGGATCCGGGCCTGGCCACCCTGCTGTCCTTCGTCACCCTCTGGTCGGGCTTCATC
GCTCGTCCGCTGGGCGGGATCATCTTCGGCCATCTCGGCGACCGCATCGGCCGCAAGACCACCCTGGTGATC
ACCCTGATCATGATGGGCATCGCCACGACCTGCATCGGCCTGTTGCCGGTCTATACGCAGATCGGCATCTGG
GCACCGATCTCCCTGGTGGCGCTGCGTATCGTCCAGGGCATCGCGGTCGGCGGCGAGTGGGGCGGCGCGATC
CTGATCGCCAGCGAAAGCGCGCCCAAGGGCAAGGGCATCCTGTACGCCGCCTTCGCCCAGCAGGGCTCGCCC
ACCGGCAACCTGCTGGCGACCCTGGCGTTCTTCGCCCTCAGCGCCCTGCCCGCCTCGGACTTCATTCTCTGG
GGCTGGCGCGCGCCGTTCCTGCTCTCCGCAGTGCTGGTCATCGTCGGCATGGTGATCCGCCTGAAGCTGGAG
GAGTCGGAAGACATGAAGCGCGTGCTGGCGCAGAAGCGCACGGTGAAGCTGCCGCTCGCCGAGGTGCTGGGC
AAGCATTGGAAGATCGTCCTGCTCGGCGCCGGCGTGCTGCCGATCATCCACGTCACCTACTTCAAGGGCACC
TTCGCCCTCTCCTGGGCGACCAAGACCCTCGGCTACAGCCAGGGCACCTTCCTCAGCATCATCGTGGTCGCG
CTGGTGGTGCAGTTCCTCAGCCAGCCACTGGGGGCGCTGCTCACTTCGCGCATCGACATGCGCAAGGCGGCA
TGCCTGATGGTGCTGCCGGAGTTCATCCTGATGCCGGCGATGTTCTTCGCCGTGGAAACCAAGGTCTACTGG
ATCGCCGCGGCCGGCATGTGCCTGGCCACGGTGCCGCACGCGATGTTCTACGGCGCGGTGGGCGGTATCCTC
GCCCGAGCCTTCCCGGCGCGGGTGCGCTACACCGGCCTGTCGCTGGCCTACCAGCTCTGCTCGCTGCTGGTC
GGCGGCGGTACGCCGGTACTGGCCCAGTGGATTCTCAACAGTACCGGCAGCATCGTCGGCGTGGCCCTGGCC
TCGGCCTGCTACGCGCTGGTCTCGCTGGCCTGTACCCTGGCCCTGTTGCGGATCACCGGGTTCCACGCCAGC
GACCTGTCGACCGCCGAGCGCGCCGACGCCGAGGACTTGCAGCGGCCCGCAGCGGTCGAGCGGGAACCGGTG
TTGCGCGCCCCCGCCCGGCTTCTGGGCGGCGATCCCGGCTAG
Translation:
MPRTPSPEDADLHKKARRAGIASFIGTTIEWYDFYIYGLAAALVFGKVFFPADMDPGLATLLSFVTLWSGFI
ARPLGGIIFGHLGDRIGRKTTLVITLIMMGIATTCIGLLPVYTQIGIWAPISLVALRIVQGIAVGGEWGGAI
LIASESAPKGKGILYAAFAQQGSPTGNLLATLAFFALSALPASDFILWGWRAPFLLSAVLVIVGMVIRLKLE
ESEDMKRVLAQKRTVKLPLAEVLGKHWKIVLLGAGVLPIIHVTYFKGTFALSWATKTLGYSQGTFLSIIVVA
LVVQFLSQPLGALLTSRIDMRKAACLMVLPEFILMPAMFFAVETKVYWIAAAGMCLATVPHAMFYGAVGGIL
ARAFPARVRYTGLSLAYQLCSLLVGGGTPVLAQWILNSTGSIVGVALASACYALVSLACTLALLRITGFHAS
DLSTAERADAEDLQRPAAVEREPVLRAPARLLGGDPG*
AnnotationID:1016GeneID:1007
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 11:11:01
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator family transporter
Cell Localization:()
Synonyms:PA3595
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative integral membrane transport protein
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE30702.1| (BX640437) putative integral membrane transport protein [Bordetella
           bronchiseptica]
          Length = 457

 Score =  334 bits (856), Expect = 8e-91
 Identities = 194/434 (44%), Positives = 262/434 (60%), Gaps = 20/434 (4%)

>gb|AAO54990.1| (AE016861) major facilitator family transporter [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 438

 Score =  305 bits (780), Expect = 5e-82
 Identities = 185/438 (42%), Positives = 253/438 (57%), Gaps = 23/438 (5%)








 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues,  94.0% aligned
Score =  113 bits (283), Expect = 1e-25
Identities = 103/433 (23%), Positives = 162/433 (37%), Gaps = 52/433 (12%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31947




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1007_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1007
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1812
                           PA3595_tr
                           translation of PA3595
                           469
                           99.36
                           99.36
                           0
                           2365.0
     

     
     
62995
                           gb|AAG06983.1|AE004780_2
                           (AE004780) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           469
                           99.36
                           99.36
                           0
                           2365.0
     

     
     
62996
                           emb|CAE30702.1|
                           (BX640437) putative integral membrane transport protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           497
                           40.64
                           55.33
                           68
                           880.0
     

     
     
62997
                           emb|CAE39941.1|
                           (BX640423) putative integral membrane transport protein [Bordetella parapertussis]
                           497
                           40.64
                           55.33
                           68
                           880.0
     

     
     
62998
                           emb|CAE43331.1|
                           (BX640420) putative integral membrane transport protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           497
                           40.64
                           55.33
                           68
                           880.0
     

     






      

          
GC ORFID: 44009How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3595Glimmer Score: 

          
Start: 3425686Stop: 3427095

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3595 translation of PA3595Homolog Bit Score 915.0

          
Other Homologs:  t_PA3595 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCGCACGCCCTCTCCCGAAGACGCCGACCTGCACAAGAAAGCCCGCAGGGCCGGTATCGCCTCCTTC 
ATCGGCACCACCATCGAGTGGTACGACTTCTACATCTACGGCCTGGCCGCCGCCCTGGTGTTCGGCAAGGTA 
TTCTTCCCCGCCGACATGGATCCGGGCCTGGCCACCCTGCTGTCCTTCGTCACCCTCTGGTCGGGCTTCATC 
GCTCGTCCGCTGGGCGGGATCATCTTCGGCCATCTCGGCGACCGCATCGGCCGCAAGACCACCCTGGTGATC 
ACCCTGATCATGATGGGCATCGCCACGACCTGCATCGGCCTGTTGCCGGTCTATACGCAGATCGGCATCTGG 
GCACCGATCTCCCTGGTGGCGCTGCGTATCGTCCAGGGCATCGCGGTCGGCGGCGAGTGGGGCGGCGCGATC 
CTGATCGCCAGCGAAAGCGCGCCCAAGGGCAAGGGCATCCTGTACGCCGCCTTCGCCCAGCAGGGCTCGCCC 
ACCGGCAACCTGCTGGCGACCCTGGCGTTCTTCGCCCTCAGCGCCCTGCCCGCCTCGGACTTCATTCTCTGG 
GGCTGGCGCGCGCCGTTCCTGCTCTCCGCAGTGCTGGTCATCGTCGGCATGGTGATCCGCCTGAAGCTGGAG 
GAGTCGGAAGACATGAAGCGCGTGCTGGCGCAGAAGCGCACGGTGAAGCTGCCGCTCGCCGAGGTGCTGGGC 
AAGCATTGGAAGATCGTCCTGCTCGGCGCCGGCGTGCTGCCGATCATCCACGTCACCTACTTCAAGGGCACC 
TTCGCCCTCTCCTGGGCGACCAAGACCCTCGGCTACAGCCAGGGCACCTTCCTCAGCATCATCGTGGTCGCG 
CTGGTGGTGCAGTTCCTCAGCCAGCCACTGGGGGCGCTGCTCACTTCGCGCATCGACATGCGCAAGGCGGCA 
TGCCTGATGGTGCTGCCGGAGTTCATCCTGATGCCGGCGATGTTCTTCGCCGTGGAAACCAAGGTCTACTGG 
ATCGCCGCGGCCGGCATGTGCCTGGCCACGGTGCCGCACGCGATGTTCTACGGCGCGGTGGGCGGTATCCTC 
GCCCGAGCCTTCCCGGCGCGGGTGCGCTACACCGGCCTGTCGCTGGCCTACCAGCTCTGCTCGCTGCTGGTC 
GGCGGCGGTACGCCGGTACTGGCCCAGTGGATTCTCAACAGTACCGGCAGCATCGTCGGCGTGGCCCTGGCC 
TCGGCCTGCTACGCGCTGGTCTCGCTGGCCTGTACCCTGGCCCTGTTGCGGATCACCGGGTTCCACGCCAGC 
GACCTGTCGACCGCCGAGCGCGCCGACGCCGAGGACTTGCAGCGGCCCGCAGCGGTCGAGCGGGAACCGGTG 
TTGCGCGCCCCCGCCCGGCTTCTGGGCGGCGATCCCGGCTAG