ViewGene

Locus Name:
GeneID:
Location:

GeneID:1006
TrivialName: PA14_72850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72850
PAO1 Ortholog Locus:PA5522
Sequence Length:1368
Protein Length:455
Start: 6489035
Stop: 6487668
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08907.1|AE004964_10 (AE004964) probable glutamine synthetase [Pseudomonas aeruginosa PAO1]
Identities = 450/455 (98%), Positives = 452/455 (99%)
Sequence:
ATGCATTTCGCCGATCCGCGGGAAGCCCGCGAGTTCCTCGCCGCACACCCCGAGGTGCGCAGCATCGAGCTG
TTCCTGATCGACGCCAACGGCGTGCCGCGCGGCAAGCTGCTGCATCGCGACGAGCTGCTGGCGGTCTACGAA
AGCGGGCGGCCGCTGCCGAGCACCATCCTCGGCCTGACCATCAATGGCGATGACGTCGAGGAGACCGGCCTG
GTCTGGGACGTCGGCGATGCCGATTGCTGGACCTTCCCGCTGCCCGGCAGCCTGACCCTGCAACCCTGGCGG
CAGTCACCGACCGGACAGGTGCAGGTCAGCATGCATCCCGAGTTCGGGCTACCGGCCGCGGCGGGCGATCCC
CGGCATGTGCTGCAGCGGGTTATCCACAGCCTGCAGGCGGAGGGTTTCCACCCGGTGATGGCGGTGGAACTG
GAGTTCTACCTGCTCGACCGCGAACGCGACAGCGACGGCCGGCCGTTGCCGGCGTTGCAGATGAATGGCCAG
CGGCCGCGGGCGACCCAGGTCTATGGCGTCTACGAGCTGGAGCAGTTGCAGCCATTCCTCGATGACTTGTAT
GCCGCCTGCGAGGCCCAGGGCCTGCCGGCGCGCACGGCGATCTCGGAGTACGCGCCGGGGCAGGTGGAGATT
ACCCTGCAGCACCGCTTCGACGCGCTCCAGGCGATCGACGAAGGCGTGCGCTACAAGCGCCTGGTCAAGGGT
GTGGCGAATCGCCATGGGTTGCAGGCCTGCTTCATGGCCAAGCCGTTCGCCGATCTATCCGGCAACGGCCTG
CACCTGCACGTCAGCCTGGCCGACGCCGCTGGCAACAATCTGTTCGCCAGCAAGGACCCGGCCGGGACCCCG
CTGCTGCGCCAGGCCATCGGTGGAATGAAGGCGTGCCTGCTGGAGTCTTTGGCGCTGTTCTGTCCGAACGCC
AACTCGTTCCGCCGCTTCCAGGCGAACAGCTACGCGCCGCTGGCGCCGACCTGGGGAATCAACAACCGCACC
GTGTCGCTGCGGGTTCCCGGCGGCCCGCCGTCCAGCCGGCACATCGAGCACCGCATCTGCGGCGCCGACGCC
AATCCCTACCTGGCGGCGGCGGCGTTGCTCGCGGCGGTGCGCCTGGGTATTCGCGAGCGACTCGACCCCGGT
GCGCCGATCACTGGCAACGGCTACGCTCAAGCCACCCAGGCGTTGCCGAGCGACTGGCTGACCGCGCTGCGC
GCGCTGGAGGGCTCGGCCTGGGCGCGCGAGGCGCTCGGCGAGGATTTCCTGAAGATCTACCTGGCGATCAAG
CAGGCCGAATACCGTGCCTTCATGGGCGAGGTCGGCGAGCAGGACTGGCGCTGGTATCTCAACCAGGCCTGA
Translation:
MHFADPREAREFLAAHPEVRSIELFLIDANGVPRGKLLHRDELLAVYESGRPLPSTILGLTINGDDVEETGL
VWDVGDADCWTFPLPGSLTLQPWRQSPTGQVQVSMHPEFGLPAAAGDPRHVLQRVIHSLQAEGFHPVMAVEL
EFYLLDRERDSDGRPLPALQMNGQRPRATQVYGVYELEQLQPFLDDLYAACEAQGLPARTAISEYAPGQVEI
TLQHRFDALQAIDEGVRYKRLVKGVANRHGLQACFMAKPFADLSGNGLHLHVSLADAAGNNLFASKDPAGTP
LLRQAIGGMKACLLESLALFCPNANSFRRFQANSYAPLAPTWGINNRTVSLRVPGGPPSSRHIEHRICGADA
NPYLAAAALLAAVRLGIRERLDPGAPITGNGYAQATQALPSDWLTALRALEGSAWAREALGEDFLKIYLAIK
QAEYRAFMGEVGEQDWRWYLNQA*
AnnotationID:1015GeneID:1006
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:28
Gene Name:
Confidence Code:3
GeneProduct:putative glutamine synthetase
Cell Localization:()
Synonyms:PA5522
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0174,pfam00120
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70120.1|AE016652_1 (AE016791) glutamine synthetase, putative [Pseudomonas putida
           KT2440]
          Length = 454

 Score =  707 bits (1824), Expect = 0.0
 Identities = 338/455 (74%), Positives = 393/455 (86%), Gaps = 1/455 (0%)

>gb|AAK25100.1| (AE005977) glutamine synthetase family protein [Caulobacter
           crescentus CB15]
          Length = 460

 Score =  469 bits (1206), Expect = e-131
 Identities = 238/456 (52%), Positives = 313/456 (68%), Gaps = 5/456 (1%)

>dbj|BAB51646.1| (AP003005) probable glutamine synthetase [Mesorhizobium loti]
          Length = 466

 Score =  424 bits (1089), Expect = e-118
 Identities = 219/455 (48%), Positives = 298/455 (65%), Gaps = 5/455 (1%)

Structural Features:
COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]
CD-Length = 443 residues, 100.0% aligned
Score =  395 bits (1017), Expect = 4e-111
Identities = 162/464 (34%), Positives = 234/464 (50%), Gaps = 35/464 (7%)

pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain. 
CD-Length = 260 residues, 100.0% aligned
Score =  266 bits (682), Expect = 3e-72
Identities = 102/264 (38%), Positives = 137/264 (51%), Gaps = 7/264 (2%)
Genomic Context:
Comment:
ReferenceID:2015
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19157
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33310
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1006_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1006

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1808 PA5522_tr translation of PA5522 455 98.90 99.34 0 2368.0
62982 gb|AAG08907.1|AE004964_10 (AE004964) probable glutamine synthetase [Pseudomonas aeruginosa PAO1] 455 98.90 99.34 0 2368.0
1809 PA1566_tr translation of PA1566 455 75.38 86.37 1 1843.0
62983 gb|AAG04955.1|AE004585_3 (AE004585) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 455 75.38 86.37 1 1843.0
62984 gb|AAN70120.1|AE016652_1 (AE016791) glutamine synthetase, putative [Pseudomonas putida KT2440] 455 74.28 86.37 1 1826.0
GC ORFID: 44008How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5522Glimmer Score:
Start: 5752724Stop: 5751357
Length: 1368
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5522 translation of PA5522Homolog Bit Score 916.0
Other Homologs: t_PA1566 (ORF: BLASTX 713.0), t_PA0296 (ORF: BLASTX 390.0), t_PA2040 (ORF: BLASTX 382.0), psyr_15may02_Scaffold6_revised_gene6921 (ORF: BLASTX 378.0), t_PA5522 (ORF: GLIMMER)
GC ORF Sequence
ATGCATTTCGCCGATCCGCGGGAAGCCCGCGAGTTCCTCGCCGCACACCCCGAGGTGCGCAGCATCGAGCTG
TTCCTGATCGACGCCAACGGCGTGCCGCGCGGCAAGCTGCTGCATCGCGACGAGCTGCTGGCGGTCTACGAA
AGCGGGCGGCCGCTGCCGAGCACCATCCTCGGCCTGACCATCAATGGCGATGACGTCGAGGAGACCGGCCTG
GTCTGGGACGTCGGCGATGCCGATTGCTGGACCTTCCCGCTGCCCGGCAGCCTGACCCTGCAACCCTGGCGG
CAGTCACCGACCGGACAGGTGCAGGTCAGCATGCATCCCGAGTTCGGGCTACCGGCCGCGGCGGGCGATCCC
CGGCATGTGCTGCAGCGGGTTATCCACAGCCTGCAGGCGGAGGGTTTCCACCCGGTGATGGCGGTGGAACTG
GAGTTCTACCTGCTCGACCGCGAACGCGACAGCGACGGCCGGCCGTTGCCGGCGTTGCAGATGAATGGCCAG
CGGCCGCGGGCGACCCAGGTCTATGGCGTCTACGAGCTGGAGCAGTTGCAGCCATTCCTCGATGACTTGTAT
GCCGCCTGCGAGGCCCAGGGCCTGCCGGCGCGCACGGCGATCTCGGAGTACGCGCCGGGGCAGGTGGAGATT
ACCCTGCAGCACCGCTTCGACGCGCTCCAGGCGATCGACGAAGGCGTGCGCTACAAGCGCCTGGTCAAGGGT
GTGGCGAATCGCCATGGGTTGCAGGCCTGCTTCATGGCCAAGCCGTTCGCCGATCTATCCGGCAACGGCCTG
CACCTGCACGTCAGCCTGGCCGACGCCGCTGGCAACAATCTGTTCGCCAGCAAGGACCCGGCCGGGACCCCG
CTGCTGCGCCAGGCCATCGGTGGAATGAAGGCGTGCCTGCTGGAGTCTTTGGCGCTGTTCTGTCCGAACGCC
AACTCGTTCCGCCGCTTCCAGGCGAACAGCTACGCGCCGCTGGCGCCGACCTGGGGAATCAACAACCGCACC
GTGTCGCTGCGGGTTCCCGGCGGCCCGCCGTCCAGCCGGCACATCGAGCACCGCATCTGCGGCGCCGACGCC
AATCCCTACCTGGCGGCGGCGGCGTTGCTCGCGGCGGTGCGCCTGGGTATTCGCGAGCGACTCGACCCCGGT
GCGCCGATCACTGGCAACGGCTACGCTCAAGCCACCCAGGCGTTGCCGAGCGACTGGCTGACCGCGCTGCGC
GCGCTGGAGGGCTCGGCCTGGGCGCGCGAGGCGCTCGGCGAGGATTTCCTGAAGATCTACCTGGCGATCAAG
CAGGCCGAATACCGTGCCTTCATGGGCGAGGTCGGCGAGCAGGACTGGCGCTGGTATCTCAACCAGGCCTGA