ViewGene
Locus Name:
GeneID:
Location:

GeneID:1005
TrivialName: PA14_32270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32270
PAO1 Ortholog Locus:PA2505
Sequence Length:1347
Protein Length:448
Start: 2803427
Stop: 2804773
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05893.1|AE004677_10 (AE004677) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 446/448 (99%), Positives = 448/448 (100%)
Sequence:
ATGCAAGGGGATGGAAAGAAACGACTGTGGACGCTTCCACTGCTGCTGGGCGCTGGAGTGATGGCCTCGGCC
GTCGCCGAGGAGAACGCCGAGCGGAGCAAGGAAGGTTTCATCGAGGGCAGCGAGGTCAACCTGCTGCTGCGC
AACTTCTACTTCAACCGCGACTTCCGCAAGGGCCAATCGAGCCCGGCGGGCGGCGGCTACACCGAGGAATGG
GTGCAGGGCTTCATGGCCAACTTCTCCTCGGGCTTCACCCAGGGCACGCTGGGCGTCGGCATCGACGCCTTC
GCCCAGCTCGGCGTGCGCCTGGACAGCGGCGGCGGGCGTTCCGGCGCCGGCGGTAGCGTCGACCTGCTGCCC
TATGACGACCAGGGGCGGCCGCAGGACGACTATTCGCGAGCCGGCGGCGCGGTCAAGCTGCGCTGGTACGGC
ACCGTGCTGCGGGTCGGCGACGTGTTCCCGGAAACCCCGGTGATCCAGTACGGCAACAGCCGGCTGTTCCCC
TCCAGCTTCCGCGGCTTTACCCTGGTCAACGACAGCCTGGCGAAGGGCCTGACCCTGCAGGCCGGCAAGCTG
AACTCGATGACCCAGCCGAACAGCACCAGCGGCAGCGACGACTTCTACAGCTTCTACACCGGCCGGCGCATC
GACTCGCCGTGGGTCGCCTACGCCGGCGGCGACTACCAGGCCACCGAGCACTGGAGCGTCAGCCTCTACGGC
AGCCGCCAGAAGGACGCCTGGGACCAGTACTACGCCGGCACCAGCTTCAACTATCCGCTGGACGACAAGCTG
TCCCTGCTCGGCGGCGCCAACTACTACAAGGTCAAGGACCAGGGCAGGCAGGTGATGGGCGAACTCGACAAC
GACATCTGGAGCGTGCGCGGCGGCTTCGCCTACGGCCCGCACCAGGTGCTGCTGTCGTACCAGCGCAACAAC
GGCGACGACGACTTCGACTACCTGCGCCAGACCGACTCCATCTACCTGGACAACTCGATCCAGTACAGCGAC
TTCAACTCGCCCAAGGAACGCTCGCTGATGCTCCGCTACGACCTCGACATGGCCGCCTTCGGCGTGCCGGGG
CTGAGCTTCATGACCCGCTATGGCAAGGGCTGGGACGCCGATTATTCGAATGCCAACAGCGTCTACATGCGC
ACCGACGCCAACGGCAACCCGCTGACCAACCAGGGCCGCTGGGAACGCGACGTGGAGGTCAAGTACGTGGTG
CAGGGCGGCGCGGCCAAGGACCTGGCGTTCCGCGTGCGCCAGGCCACGGTGCGCTCCGACAGCTTCGAGTCG
GACCTCGACGAAGTCCGCCTGATCGTCGAATACCCGCTGCAAATCCTCTGA
Translation:
MQGDGKKRLWTLPLLLGAGVMASAVAEENAERSKEGFIEGSEVNLLLRNFYFNRDFRKGQSSPAGGGYTEEW
VQGFMANFSSGFTQGTLGVGIDAFAQLGVRLDSGGGRSGAGGSVDLLPYDDQGRPQDDYSRAGGAVKLRWYG
TVLRVGDVFPETPVIQYGNSRLFPSSFRGFTLVNDSLAKGLTLQAGKLNSMTQPNSTSGSDDFYSFYTGRRI
DSPWVAYAGGDYQATEHWSVSLYGSRQKDAWDQYYAGTSFNYPLDDKLSLLGGANYYKVKDQGRQVMGELDN
DIWSVRGGFAYGPHQVLLSYQRNNGDDDFDYLRQTDSIYLDNSIQYSDFNSPKERSLMLRYDLDMAAFGVPG
LSFMTRYGKGWDADYSNANSVYMRTDANGNPLTNQGRWERDVEVKYVVQGGAAKDLAFRVRQATVRSDSFES
DLDEVRLIVEYPLQIL*
AnnotationID:1014GeneID:1005
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 16:04:51
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:oprD3
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69230.1|AE016557_10 (AE016787) porin, putative [Pseudomonas putida KT2440]
          Length = 447

 Score =  557 bits (1436), Expect = e-158
 Identities = 276/437 (63%), Positives = 340/437 (77%), Gaps = 11/437 (2%)

>gb|AAO53913.1| (AE016857) outer membrane porin, OprD family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 441

 Score =  550 bits (1418), Expect = e-156
 Identities = 265/441 (60%), Positives = 331/441 (75%), Gaps = 2/441 (0%)






 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family. 
CD-Length = 449 residues,  97.8% aligned
Score =  262 bits (671), Expect = 5e-71
Identities = 152/452 (33%), Positives = 220/452 (48%), Gaps = 56/452 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2013




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19155




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33054




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1005_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1005
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1805
                           PA2505_tr
                           translation of PA2505
                           448
                           99.55
                           99.99
                           0
                           2367.0
     

     
     
62965
                           gb|AAG05893.1|AE004677_10
                           (AE004677) probable porin [Pseudomonas aeruginosa PAO1]
                           448
                           99.55
                           99.99
                           0
                           2367.0
     

     
     
62966
                           gb|AAB87507.1|
                           (AF033849) oprD2-like porin precursor [Pseudomonas aeruginosa]
                           448
                           99.33
                           99.99
                           0
                           2364.0
     

     
     
62967
                           gb|AAN69230.1|AE016557_10
                           (AE016787) porin, putative [Pseudomonas putida KT2440]
                           459
                           60.78
                           74.72
                           23
                           1442.0
     

     
     
62968
                           gb|AAG09632.1|
                           (AY007258) CztO [Pseudomonas fluorescens]
                           448
                           60.49
                           72.76
                           10
                           1430.0
     

     






      

          
GC ORFID: 44007How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2505Glimmer Score: 

          
Start: 2150497Stop: 2149151

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2505 translation of PA2505Homolog Bit Score 916.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6555 (ORF: BLASTX 562.0), t_PA0958 (ORF: BLASTX 324.0), t_PA0162 (ORF: BLASTX 320.0), psyr_15may02_Scaffold3_revised_gene4762 (ORF: BLASTX 316.0), t_PA2505 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGGGGATGGAAAGAAACGACTGTGGACGCTTCCACTGCTGCTGGGCGCTGGAGTGATGGCCTCGGCC 
GTCGCCGAGGAGAACGCCGAGCGGAGCAAGGAAGGTTTCATCGAGGGCAGCGAGGTCAACCTGCTGCTGCGC 
AACTTCTACTTCAACCGCGACTTCCGCAAGGGCCAATCGAGCCCGGCGGGCGGCGGCTACACCGAGGAATGG 
GTGCAGGGCTTCATGGCCAACTTCTCCTCGGGCTTCACCCAGGGCACGCTGGGCGTCGGCATCGACGCCTTC 
GCCCAGCTCGGCGTGCGCCTGGACAGCGGCGGCGGGCGTTCCGGCGCCGGCGGTAGCGTCGACCTGCTGCCC 
TATGACGACCAGGGGCGGCCGCAGGACGACTATTCGCGAGCCGGCGGCGCGGTCAAGCTGCGCTGGTACGGC 
ACCGTGCTGCGGGTCGGCGACGTGTTCCCGGAAACCCCGGTGATCCAGTACGGCAACAGCCGGCTGTTCCCC 
TCCAGCTTCCGCGGCTTTACCCTGGTCAACGACAGCCTGGCGAAGGGCCTGACCCTGCAGGCCGGCAAGCTG 
AACTCGATGACCCAGCCGAACAGCACCAGCGGCAGCGACGACTTCTACAGCTTCTACACCGGCCGGCGCATC 
GACTCGCCGTGGGTCGCCTACGCCGGCGGCGACTACCAGGCCACCGAGCACTGGAGCGTCAGCCTCTACGGC 
AGCCGCCAGAAGGACGCCTGGGACCAGTACTACGCCGGCACCAGCTTCAACTATCCGCTGGACGACAAGCTG 
TCCCTGCTCGGCGGCGCCAACTACTACAAGGTCAAGGACCAGGGCAGGCAGGTGATGGGCGAACTCGACAAC 
GACATCTGGAGCGTGCGCGGCGGCTTCGCCTACGGCCCGCACCAGGTGCTGCTGTCGTACCAGCGCAACAAC 
GGCGACGACGACTTCGACTACCTGCGCCAGACCGACTCCATCTACCTGGACAACTCGATCCAGTACAGCGAC 
TTCAACTCGCCCAAGGAACGCTCGCTGATGCTCCGCTACGACCTCGACATGGCCGCCTTCGGCGTGCCGGGG 
CTGAGCTTCATGACCCGCTATGGCAAGGGCTGGGACGCCGATTATTCGAATGCCAACAGCGTCTACATGCGC 
ACCGACGCCAACGGCAACCCGCTGACCAACCAGGGCCGCTGGGAACGCGACGTGGAGGTCAAGTACGTGGTG 
CAGGGCGGCGCGGCCAAGGACCTGGCGTTCCGCGTGCGCCAGGCCACGGTGCGCTCCGACAGCTTCGAGTCG 
GACCTCGACGAAGTCCGCCTGATCGTCGAATACCCGCTGCAAATCCTCTGA