ViewGene
Locus Name:
GeneID:
Location:

GeneID:1004
TrivialName: PA14_37630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37630
PAO1 Ortholog Locus:PA2079
Sequence Length:1407
Protein Length:468
Start: 3347457
Stop: 3348863
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05467.1|AE004635_5 (AE004635) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 467/468 (99%), Positives = 468/468 (100%)
Sequence:
ATGAACGACCCCCAGGGCTTCGAGGCCATCTCGCGCCGCGAACAGGGCCTGCAACGGCGGCTCTCGGCCGCG
CAGATGAGCATGATCGCCATCGGCGGCGCCATCGGCACCGGCCTGTTCATGGGCAGCGCCTTCGCCATCGGT
TTCGCCGGCCCCAGCGTCCTGCTCAGCTATGCCATCGGCGCGCTGATCACCCTGCTGCTGATGGGCTGCCTG
GCGGAAATGACCGTGGCCCACGCCACCCCCGGCTCGTTCGGCGCCTTCGCCGAGCACTACGTCGGCCCGCTG
GCCGGGTTCCTGGTGCGCTACGCCTATTGGGCGGCCATCGTCCTGGCGGTGGGCACCGAGGTCACGGCGGTG
GCCATGTACATGAAGTACTGGTTCGCCGGTATCCCGGAATGGGTCTGGATCATCTCCTTCTCGACCCTGCTG
ATCGGCCTGAACGCCAGCAGCGTGAAAGCCTTCGGCAACTTCGAATACTGCTTCTCGACACTGAAGATCGCC
GCCATCGTCGCCTTCATCCTGCTCGGCGCCTACCTGGTGTTCGGCTCCGCCAACCCGGCCTACGGCGTGCAC
AACTACAGCGCCCACGGCGGCTTCTTCCCGCACGGCCTGAAAGGCATGTGGATCGCCGTGGTGGTGTCGATC
TTCAGCTATCTCAGCGTGGAGATGATCGCGGTCGCCGCCGCCGAGGCCGAGCATCCGGAACAGGCGGTGAAG
TCGGCGTTCCGCTCGACCATCGTGCGCCTGGTGGTGTTCTACCTGCTGACCCTGGCGCTGATGCTCGCCATC
GTCCCCTGGGACCAGGCCGGGCAGAGCCAGAGCCCGTTCGTCACGGTGATGCAGGCGATCGGCCTGCCCGGC
GCGACCGGCGTGATGAACTTCGTGGTCCTGGTGGCCGCGCTGTCGGCGATGAACAGCCAGCTCTACATCACC
ACCCGGATGATGTTCAGCCTGTCGCGCGCGGGGCACGCGCCGAAGGGCCTCGGCGAACTGAGCCGCCAGGGC
GTGCCGCTGAACGCGCTGCTGCTGTCGAGCGTCGGTATCGCCCTGGCGACCCTGCTCAACCTGGTCTACCCC
GAGCAGTCCTTCACCCTGATGATGGCGGTGTCGATGTTCGGCGCCCTCTTCACCTGGCTGATGATCTTCTTC
ACCCACCTCTGCTTCCGCCGCCACCGCGCCCGCCACGGCGGCGCGCCGCTGGCCTTCCGCATGCGCCTGGCG
CCCTGGTCGACATTGCTCGGCCTGGCGCTGATGGCGGCGATCCTGGTCACCACCTTCTTCACCGAGGCGTTC
CGCATGACCCTGGTCTTCGGCGTGCCGTTCCTCGCGCTGCTCAGCGCACTCTACCTGGTCTTCGTCCGCAAG
CCCGGCAGGGATTGTCCGATAGAACGGGCAACGCCCTAG
Translation:
MNDPQGFEAISRREQGLQRRLSAAQMSMIAIGGAIGTGLFMGSAFAIGFAGPSVLLSYAIGALITLLLMGCL
AEMTVAHATPGSFGAFAEHYVGPLAGFLVRYAYWAAIVLAVGTEVTAVAMYMKYWFAGIPEWVWIISFSTLL
IGLNASSVKAFGNFEYCFSTLKIAAIVAFILLGAYLVFGSANPAYGVHNYSAHGGFFPHGLKGMWIAVVVSI
FSYLSVEMIAVAAAEAEHPEQAVKSAFRSTIVRLVVFYLLTLALMLAIVPWDQAGQSQSPFVTVMQAIGLPG
ATGVMNFVVLVAALSAMNSQLYITTRMMFSLSRAGHAPKGLGELSRQGVPLNALLLSSVGIALATLLNLVYP
EQSFTLMMAVSMFGALFTWLMIFFTHLCFRRHRARHGGAPLAFRMRLAPWSTLLGLALMAAILVTTFFTEAF
RMTLVFGVPFLALLSALYLVFVRKPGRDCPIERATP*
AnnotationID:1013GeneID:1004
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:49
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA2079
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1113,COG0833,
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66684.1|AE016296_4 (AE016778) amino acid permease [Pseudomonas putida KT2440]
          Length = 472

 Score =  342 bits (876), Expect = 4e-93
 Identities = 175/444 (39%), Positives = 268/444 (60%), Gaps = 3/444 (0%)

>gb|AAC00244.1| (AF008220) amino acid transporter [Bacillus subtilis]
          Length = 463

 Score =  342 bits (876), Expect = 4e-93
 Identities = 161/444 (36%), Positives = 277/444 (62%), Gaps = 3/444 (0%)

>gb|AAM86119.1|AE013858_9 (AE013858) aromatic amino acid permease [Yersinia pestis KIM]
          Length = 503

 Score =  332 bits (852), Expect = 2e-90
 Identities = 174/451 (38%), Positives = 269/451 (59%), Gaps = 6/451 (1%)






 
Structural Features:
COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
[Amino acid transport and metabolism]
CD-Length = 462 residues,  99.1% aligned
Score =  445 bits (1145), Expect = 7e-126
Identities = 204/459 (44%), Positives = 292/459 (63%), Gaps = 4/459 (0%)

COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 541 residues,  84.1% aligned
Score =  344 bits (883), Expect = 2e-95
Identities = 150/455 (32%), Positives = 245/455 (53%), Gaps = 13/455 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2011




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19153




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32628




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1004_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1004
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1804
                           PA2079_tr
                           translation of PA2079
                           468
                           99.78
                           99.99
                           0
                           2367.0
     

     
     
62962
                           gb|AAG05467.1|AE004635_5
                           (AE004635) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           468
                           99.78
                           99.99
                           0
                           2367.0
     

     
     
62963
                           emb|CAB71803.1|
                           (AL939113) putative amino acid permease [Streptomyces coelicolor A3(2)]
                           483
                           32.91
                           49.27
                           76
                           713.0
     

     
     
62964
                           emb|CAA83253.1|
                           (Z31377) potential amino acid permease [Lactobacillus delbrueckii]
                           468
                           14.31
                           20.51
                           293
                           305.0
     

     






      

          
GC ORFID: 44006How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2079Glimmer Score: 

          
Start: 1606457Stop: 1605051

          
Length: 1407


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2079 translation of PA2079Homolog Bit Score 916.0

          
Other Homologs:  t_PA2079 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACCCCCAGGGCTTCGAGGCCATCTCGCGCCGCGAACAGGGCCTGCAACGGCGGCTCTCGGCCGCG 
CAGATGAGCATGATCGCCATCGGCGGCGCCATCGGCACCGGCCTGTTCATGGGCAGCGCCTTCGCCATCGGT 
TTCGCCGGCCCCAGCGTCCTGCTCAGCTATGCCATCGGCGCGCTGATCACCCTGCTGCTGATGGGCTGCCTG 
GCGGAAATGACCGTGGCCCACGCCACCCCCGGCTCGTTCGGCGCCTTCGCCGAGCACTACGTCGGCCCGCTG 
GCCGGGTTCCTGGTGCGCTACGCCTATTGGGCGGCCATCGTCCTGGCGGTGGGCACCGAGGTCACGGCGGTG 
GCCATGTACATGAAGTACTGGTTCGCCGGTATCCCGGAATGGGTCTGGATCATCTCCTTCTCGACCCTGCTG 
ATCGGCCTGAACGCCAGCAGCGTGAAAGCCTTCGGCAACTTCGAATACTGCTTCTCGACACTGAAGATCGCC 
GCCATCGTCGCCTTCATCCTGCTCGGCGCCTACCTGGTGTTCGGCTCCGCCAACCCGGCCTACGGCGTGCAC 
AACTACAGCGCCCACGGCGGCTTCTTCCCGCACGGCCTGAAAGGCATGTGGATCGCCGTGGTGGTGTCGATC 
TTCAGCTATCTCAGCGTGGAGATGATCGCGGTCGCCGCCGCCGAGGCCGAGCATCCGGAACAGGCGGTGAAG 
TCGGCGTTCCGCTCGACCATCGTGCGCCTGGTGGTGTTCTACCTGCTGACCCTGGCGCTGATGCTCGCCATC 
GTCCCCTGGGACCAGGCCGGGCAGAGCCAGAGCCCGTTCGTCACGGTGATGCAGGCGATCGGCCTGCCCGGC 
GCGACCGGCGTGATGAACTTCGTGGTCCTGGTGGCCGCGCTGTCGGCGATGAACAGCCAGCTCTACATCACC 
ACCCGGATGATGTTCAGCCTGTCGCGCGCGGGGCACGCGCCGAAGGGCCTCGGCGAACTGAGCCGCCAGGGC 
GTGCCGCTGAACGCGCTGCTGCTGTCGAGCGTCGGTATCGCCCTGGCGACCCTGCTCAACCTGGTCTACCCC 
GAGCAGTCCTTCACCCTGATGATGGCGGTGTCGATGTTCGGCGCCCTCTTCACCTGGCTGATGATCTTCTTC 
ACCCACCTCTGCTTCCGCCGCCACCGCGCCCGCCACGGCGGCGCGCCGCTGGCCTTCCGCATGCGCCTGGCG 
CCCTGGTCGACATTGCTCGGCCTGGCGCTGATGGCGGCGATCCTGGTCACCACCTTCTTCACCGAGGCGTTC 
CGCATGACCCTGGTCTTCGGCGTGCCGTTCCTCGCGCTGCTCAGCGCACTCTACCTGGTCTTCGTCCGCAAG 
CCCGGCAGGGATTGTCCGATAGAACGGGCAACGCCCTAG