ViewGene
Locus Name:
GeneID:
Location:

GeneID:1003
TrivialName: PA14_04890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04890
PAO1 Ortholog Locus:PA0372
Sequence Length:1398
Protein Length:465
Start: 432154
Stop: 430757
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03761.1|AE004475_3 (AE004475) probable zinc protease [Pseudomonas aeruginosa PAO1]
Identities = 464/465 (99%), Positives = 464/465 (99%)
Sequence:
GTGGCGGCACGAAAGGTCCAGATCACCATGAAAACCCCAGCTCGCCGCCGCGTCGGCCTGCTCCTAGCCAGC
CTTTGTCTCCCGCTTTTCGCCCAGGCGGCGGAAACCCAGCCCACCCACGAGTTCAGCCTCGACAACGGCCTG
AAGGTCATAGTGCGTGAAGACCACCGCGCCCCGGTGGTGGTTTCCCAACTCTGGTACAGGATCGGCTCCAGC
TACGAGACACCCGGGCTCACCGGCCTGTCCCACGCCCTCGAACACATGATGTTCAAGGGCAGCCGCAAGCTC
GGCCCGGGCGAAGCCTCGCGGGTGCTGCGCGACCTGGGTGCGGAAGAGAACGCCTTCACCACCGACGACTAC
ACCGCCTATTACCAGGTCCTGGCCCGCGACCGCCTGCCGGTGGCGCTGGAGATGGAAGCCGACCGCATGGCC
CACCTGAGCCTGCCGGCCGACCAGTTCAAGAGCGAGATCGAGGTGATCAAGGAGGAGCGCCGCCTGCGCACC
GACGACAATCCCAACGCCCTCGCCTTCGAGCGCTTCAAGGCCGCCGCCTACCCGGCCAGCGGCTACCACACC
CCGACCATCGGCTGGATGGCCGACCTGCAGCGCATGACCATCGACGACCTGCGCCACTGGTACGAATCCTGG
TACGCGCCGAACAACGCCACCCTGGTAGTGGTCGGCGACGTCACCGCCGACGAGGTCAAGACCCTCGCCAAG
CGCTACTTCGGCGAGATCCCCTGGCGCCAGCTACCGCCGGCGCGCAAGCCGCTGGAACTGGCCGAGCCCGGC
GAGCGCCGGCTCAAGCTGTACGTACGCACCCAGCTGCCGAACCTGATCATGGGCTTCAATGTGCCCAGCCTG
GGCAGCAGCGAGAACCCTCGCGAAGTCAACGCCCTGCGCCTGATCGGCGCGCTGCTCGATGGCGGCTACAGC
GCCCGCCTGGCCTCGCGCCTGGAGCGCGGCGAGGAGCTGGTCGCCGGCGCCTCCACCTACTATGACGCGTTC
AACCGCGGCGACAGCCTGTTCGTCCTCTCGGCCACGCCGAACGTGCAGAAGGGCAAGACTCTCGAGCAGGTC
GAGGCCGGTCTGTGGAAGCAGCTCGATGACCTCAAGCAGAACCCGCCCAGCGCCGCGGAGATCGAGCGCGTG
CGCGCGCAGATGATCGCCGGGATGGTCTACGAGAAGGACTCCATCGCCGCCCAGGCCAGCAGCATCGGCCAG
CTGGAAAGCGTCGGCCTGTCCTGGAAGCTGATCGACCAGGACCTGGAGGCCCTCAAGGCAGTGACTCCGGAC
GATATCCAGAAAGCCGCCCGCACCTATTTCACCCCGTCGCGCCTGACCCTGGCGCAAGTGCTGCCTGTGAAG
GCCGAGGAAAAGGAGGCCCGTCATGAGTGA
Translation:
MAARKVQITMKTPARRRVGLLLASLCLPLFAQAAETQPTHEFSLDNGLKVIVREDHRAPVVVSQLWYRIGSS
YETPGLTGLSHALEHMMFKGSRKLGPGEASRVLRDLGAEENAFTTDDYTAYYQVLARDRLPVALEMEADRMA
HLSLPADQFKSEIEVIKEERRLRTDDNPNALAFERFKAAAYPASGYHTPTIGWMADLQRMTIDDLRHWYESW
YAPNNATLVVVGDVTADEVKTLAKRYFGEIPWRQLPPARKPLELAEPGERRLKLYVRTQLPNLIMGFNVPSL
GSSENPREVNALRLIGALLDGGYSARLASRLERGEELVAGASTYYDAFNRGDSLFVLSATPNVQKGKTLEQV
EAGLWKQLDDLKQNPPSAAEIERVRAQMIAGMVYEKDSIAAQASSIGQLESVGLSWKLIDQDLEALKAVTPD
DIQKAARTYFTPSRLTLAQVLPVKAEEKEARHE*
AnnotationID:1012GeneID:1003
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:54
Gene Name:
Confidence Code:3
GeneProduct:putative zinc protease
Cell Localization:()
Synonyms:PA0372
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative Zn-dependent peptidase
Functional Category Confidence Code:5
COGs:COG0612
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70677.1|AE016711_5 (AE016793) zinc protease, putative [Pseudomonas putida KT2440]
          Length = 451

 Score =  692 bits (1786), Expect = 0.0
 Identities = 341/456 (74%), Positives = 398/456 (87%), Gaps = 5/456 (1%)

>gb|AAO53970.1| (AE016857) peptidase, M16 family [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 450

 Score =  686 bits (1770), Expect = 0.0
 Identities = 337/451 (74%), Positives = 393/451 (87%), Gaps = 3/451 (0%)








 
Structural Features:
COG0612, PqqL, Predicted Zn-dependent peptidase
CD-Length = 438 residues, 100.0% aligned
Score =  308 bits (789), Expect = 1e-84
Identities = 144/443 (32%), Positives = 221/443 (49%), Gaps = 7/443 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14267




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19151




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33714




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1003_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1003
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1803
                           PA0372_tr
                           translation of PA0372
                           465
                           99.78
                           99.78
                           0
                           2370.0
     

     
     
62953
                           gb|AAG03761.1|AE004475_3
                           (AE004475) probable zinc protease [Pseudomonas aeruginosa PAO1]
                           465
                           99.56
                           99.78
                           0
                           2367.0
     

     
     
62954
                           gb|AAN70677.1|AE016711_5
                           (AE016793) zinc protease, putative [Pseudomonas putida KT2440]
                           465
                           73.33
                           85.59
                           14
                           1790.0
     

     
     
62955
                           gb|AAO53970.1|
                           (AE016857) peptidase, M16 family [Pseudomonas syringae pv. tomato str. DC3000]
                           465
                           72.47
                           84.51
                           15
                           1771.0
     

     
     
62957
                           emb|CAD85327.1|
                           (BX321861) Insulinase family (Peptidase family M16) [Nitrosomonas europaea ATCC 19718]
                           475
                           42.10
                           58.52
                           23
                           940.0
     

     






      

          
GC ORFID: 44005How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0372Glimmer Score: 

          
Start: 6233496Stop: 6232099

          
Length: 1398


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0372 translation of PA0372Homolog Bit Score 917.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6820 (ORF: BLASTX 686.0), t_PA0372 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCGGCACGAAAGGTCCAGATCACCATGAAAACCCCAGCTCGCCGCCGCGTCGGCCTGCTCCTAGCCAGC 
CTTTGTCTCCCGCTTTTCGCCCAGGCGGCGGAAACCCAGCCCACCCACGAGTTCAGCCTCGACAACGGCCTG 
AAGGTCATAGTGCGTGAAGACCACCGCGCCCCGGTGGTGGTTTCCCAACTCTGGTACAGGATCGGCTCCAGC 
TACGAGACACCCGGGCTCACCGGCCTGTCCCACGCCCTCGAACACATGATGTTCAAGGGCAGCCGCAAGCTC 
GGCCCGGGCGAAGCCTCGCGGGTGCTGCGCGACCTGGGTGCGGAAGAGAACGCCTTCACCACCGACGACTAC 
ACCGCCTATTACCAGGTCCTGGCCCGCGACCGCCTGCCGGTGGCGCTGGAGATGGAAGCCGACCGCATGGCC 
CACCTGAGCCTGCCGGCCGACCAGTTCAAGAGCGAGATCGAGGTGATCAAGGAGGAGCGCCGCCTGCGCACC 
GACGACAATCCCAACGCCCTCGCCTTCGAGCGCTTCAAGGCCGCCGCCTACCCGGCCAGCGGCTACCACACC 
CCGACCATCGGCTGGATGGCCGACCTGCAGCGCATGACCATCGACGACCTGCGCCACTGGTACGAATCCTGG 
TACGCGCCGAACAACGCCACCCTGGTAGTGGTCGGCGACGTCACCGCCGACGAGGTCAAGACCCTCGCCAAG 
CGCTACTTCGGCGAGATCCCCTGGCGCCAGCTACCGCCGGCGCGCAAGCCGCTGGAACTGGCCGAGCCCGGC 
GAGCGCCGGCTCAAGCTGTACGTACGCACCCAGCTGCCGAACCTGATCATGGGCTTCAATGTGCCCAGCCTG 
GGCAGCAGCGAGAACCCTCGCGAAGTCAACGCCCTGCGCCTGATCGGCGCGCTGCTCGATGGCGGCTACAGC 
GCCCGCCTGGCCTCGCGCCTGGAGCGCGGCGAGGAGCTGGTCGCCGGCGCCTCCACCTACTATGACGCGTTC 
AACCGCGGCGACAGCCTGTTCGTCCTCTCGGCCACGCCGAACGTGCAGAAGGGCAAGACTCTCGAGCAGGTC 
GAGGCCGGTCTGTGGAAGCAGCTCGATGACCTCAAGCAGAACCCGCCCAGCGCCGCGGAGATCGAGCGCGTG 
CGCGCGCAGATGATCGCCGGGATGGTCTACGAGAAGGACTCCATCGCCGCCCAGGCCAGCAGCATCGGCCAG 
CTGGAAAGCGTCGGCCTGTCCTGGAAGCTGATCGACCAGGACCTGGAGGCCCTCAAGGCAGTGACTCCGGAC 
GATATCCAGAAAGCCGCCCGCACCTATTTCACCCCGTCGCGCCTGACCCTGGCGCAAGTGCTGCCTGTGAAG 
GCCGAGGAAAAGGAGGCCCGTCATGAGTGA