ViewGene

Locus Name:
GeneID:
Location:

GeneID:1001
TrivialName: PA14_71210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71210
PAO1 Ortholog Locus:PA5393
Sequence Length:1353
Protein Length:450
Start: 6344536
Stop: 6343184
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08778.1|AE004951_12 (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 448/450 (99%), Positives = 450/450 (100%)
Sequence:
ATGACCGACCTGAATCGCACCGCCTTGCCCTCGCGCACGGACGGGACCGTGGAAAAGACCGACACCCTCGTC
GTCGGCGCCGGCCAGGCCGGCGTGGCGATGAGCGAGCACCTGAGCCGGCTCGGCGTGCCGCACCTGGTCCTG
GAGCGCAACCGCATAGCCGAGGCCTGGCGCAGCGGACGCTGGGACTCACTGGTGGCCAACGGCCCGGCCTGG
CACGACCGCTTCCCGGGAATGGAATTCGACATCGATCCCGACGGTTTCCCCGGCAAGGACCAGGTGGCGGCC
TATTTCGAGGCCTACGCGAAGAAATTCGACGCGCCGATCCGTACCGGCGTCGAGGTGAGGAAGGTGGTGCGC
AATGTCGGCCGCCCCGGCTTCACCGTGGAAACCTCCGCCGGGACCATCGAGGCCAACCGCGTGGTCGCCGCC
ACCGGCCCGTTCCAGCGTCCGGTGATCCCGCCGATCGCGCCGCGCGACGAGCGTATCCGGCAGATCCACTCG
GCCCACTACTACAACCCGCAGCAGCTGCCCGAAGGTGCGGTACTGGTGGTCGGCGCCGGTTCGTCGGGGGTA
CAGATCGCCGACGAGCTGCAACGTGCCGGGCGCCAGGTCTACCTCTCGGTGGGCGCTCATGACCGTCCGCCG
CGTTCCTACCGCAACCGCGACTTCTGCTGGTGGCTGGGCGTGCTCGGCGAATGGGATGCGGAAGTCGCCAAG
CCCGGGCGCGAGCATGTGACCATCGCCGTGAGCGGTGCCCGCGGCGGACATACCGTGGACTTCCGCGCCCTG
GCGCATCAGGGCGTGACCCTGGTCGGACTGACCGAATCCTTCGTCGACGGCGTCGCGACCTTCCGGCCGGAC
CTGGCGGAGAACCTGGCGCGCGGCGACGAGAACTACCTGGCGTTGCTCGACGCCGCCGACGCCTATATCGCC
CGCAACGGCCTTGACCTGCCGGAAGAGCCCGAGGCGCGCCGCCGGCTGCCGGACCCGCAGTGCGTGACCGAT
CCGATCCTCGAACTGGACCTGGCCGAGGCCGGGGTGGGCAGCATCATCTGGGCCACCGGCTATGCCGTCGAC
TTCGGCTGGCTGCAGGTCGATGCCTTCGACCGCGACGGCAAGCCGCGCCACCAGCGTGGTGTGTCCAGCGAA
CCCGGCGTGTATTTCATCGGCCTGCCCTGGCTGTCGCGGCGCGGCTCCTCGTTCATCTGGGGCGTCTGGCAC
GACGCGCGCCATGTCGCCGACCACATCGCCATCCAGCGCAAGTACCTCGCATACCGCGACGCCGCCCaGCGC
CAGGAACAGGACCGCGCCTCGCAAGCTCCGCAAACCAGCCTCCAGGAAGTCAGCTGA
Translation:
MTDLNRTALPSRTDGTVEKTDTLVVGAGQAGVAMSEHLSRLGVPHLVLERNRIAEAWRSGRWDSLVANGPAW
HDRFPGMEFDIDPDGFPGKDQVAAYFEAYAKKFDAPIRTGVEVRKVVRNVGRPGFTVETSAGTIEANRVVAA
TGPFQRPVIPPIAPRDERIRQIHSAHYYNPQQLPEGAVLVVGAGSSGVQIADELQRAGRQVYLSVGAHDRPP
RSYRNRDFCWWLGVLGEWDAEVAKPGREHVTIAVSGARGGHTVDFRALAHQGVTLVGLTESFVDGVATFRPD
LAENLARGDENYLALLDAADAYIARNGLDLPEEPEARRRLPDPQCVTDPILELDLAEAGVGSIIWATGYAVD
FGWLQVDAFDRDGKPRHQRGVSSEPGVYFIGLPWLSRRGSSFIWGVWHDARHVADHIAIQRKYLAYRDAAQR
QEQDRASQAPQTSLQEVS*
AnnotationID:1010GeneID:1001
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:59
Gene Name:
Confidence Code:3
GeneProduct:putative monooxygenase
Cell Localization:()
Synonyms:PA5393
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2072
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69174.1|AE016551_5 (AE016787) monooxygenase, putative [Pseudomonas putida KT2440]
          Length = 439

 Score =  710 bits (1833), Expect = 0.0
 Identities = 331/417 (79%), Positives = 375/417 (89%)
Structural Features:
COG2072, TrkA, Predicted flavoprotein involved in K+ transport 
[Inorganic ion transport and metabolism]
CD-Length = 443 residues, 100.0% aligned
Score =  232 bits (592), Expect = 8e-62
Identities = 123/455 (27%), Positives = 175/455 (38%), Gaps = 28/455 (6%)
Genomic Context:
Comment:
ReferenceID:2005
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19147
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34703
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1001_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1001

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1801 PA5393_tr translation of PA5393 450 99.55 99.99 0 2371.0
62875 gb|AAG08778.1|AE004951_12 (AE004951) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 450 99.55 99.99 0 2371.0
62876 gb|AAN69174.1|AE016551_5 (AE016787) monooxygenase, putative [Pseudomonas putida KT2440] 456 74.12 84.21 23 1829.0
62877 emb|CAE35157.1| (BX640451) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 454 70.48 79.51 34 1727.0
62878 emb|CAE44984.1| (BX640412) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 454 70.48 79.51 34 1727.0
GC ORFID: 44003How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5393Glimmer Score:
Start: 5608225Stop: 5606873
Length: 1353
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5393 translation of PA5393Homolog Bit Score 917.0
Other Homologs: t_PA5393 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGACCTGAATCGCACCGCCTTGCCCTCGCGCACGGACGGGACCGTGGAAAAGACCGACACCCTCGTC
GTCGGCGCCGGCCAGGCCGGCGTGGCGATGAGCGAGCACCTGAGCCGGCTCGGCGTGCCGCACCTGGTCCTG
GAGCGCAACCGCATAGCCGAGGCCTGGCGCAGCGGACGCTGGGACTCACTGGTGGCCAACGGCCCGGCCTGG
CACGACCGCTTCCCGGGAATGGAATTCGACATCGATCCCGACGGTTTCCCCGGCAAGGACCAGGTGGCGGCC
TATTTCGAGGCCTACGCGAAGAAATTCGACGCGCCGATCCGTACCGGCGTCGAGGTGAGGAAGGTGGTGCGC
AATGTCGGCCGCCCCGGCTTCACCGTGGAAACCTCCGCCGGGACCATCGAGGCCAACCGCGTGGTCGCCGCC
ACCGGCCCGTTCCAGCGTCCGGTGATCCCGCCGATCGCGCCGCGCGACGAGCGTATCCGGCAGATCCACTCG
GCCCACTACTACAACCCGCAGCAGCTGCCCGAAGGTGCGGTACTGGTGGTCGGCGCCGGTTCGTCGGGGGTA
CAGATCGCCGACGAGCTGCAACGTGCCGGGCGCCAGGTCTACCTCTCGGTGGGCGCTCATGACCGTCCGCCG
CGTTCCTACCGCAACCGCGACTTCTGCTGGTGGCTGGGCGTGCTCGGCGAATGGGATGCGGAAGTCGCCAAG
CCCGGGCGCGAGCATGTGACCATCGCCGTGAGCGGTGCCCGCGGCGGACATACCGTGGACTTCCGCGCCCTG
GCGCATCAGGGCGTGACCCTGGTCGGACTGACCGAATCCTTCGTCGACGGCGTCGCGACCTTCCGGCCGGAC
CTGGCGGAGAACCTGGCGCGCGGCGACGAGAACTACCTGGCGTTGCTCGACGCCGCCGACGCCTATATCGCC
CGCAACGGCCTTGACCTGCCGGAAGAGCCCGAGGCGCGCCGCCGGCTGCCGGACCCGCAGTGCGTGACCGAT
CCGATCCTCGAACTGGACCTGGCCGAGGCCGGGGTGGGCAGCATCATCTGGGCCACCGGCTATGCCGTCGAC
TTCGGCTGGCTGCAGGTCGATGCCTTCGACCGCGACGGCAAGCCGCGCCACCAGCGTGGTGTGTCCAGCGAA
CCCGGCGTGTATTTCATCGGCCTGCCCTGGCTGTCGCGGCGCGGCTCCTCGTTCATCTGGGGCGTCTGGCAC
GACGCGCGCCATGTCGCCGACCACATCGCCATCCAGCGCAAGTACCTCGCATACCGCGACGCCGCCCaGCGC
CAGGAACAGGACCGCGCCTCGCAAGCTCCGCAAACCAGCCTCCAGGAAGTCAGCTGA