ViewGene
Locus Name:
GeneID:
Location:

GeneID:100
TrivialName: PA14_55780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55780
PAO1 Ortholog Locus:PA4293
Sequence Length:2769
Protein Length:922
Start: 4982794
Stop: 4980026
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07681.1|AE004845_7 (AE004845) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 919/922 (99%), Positives = 919/922 (99%)
Sequence:
ATGTTCGAATTTTCCCGCTCGTCGTCCGCCGAGGCCGAGAGGCCGGAACCCTTTTCGCAGGAAGGCCCCGCC
CTCTGGAGCGCTTCGCTGAGGAGTTGGGACCTGTGTTTCGAGATGGACGAACAGGACCGCGTGATCCGGGTC
GGCGGGCGGCAGGCGTATCGTCTGCAGTGCGCCCATGGGCTTGGCGAACAGCCGCGGCCTTTCGCCGAGTAT
CTGGAGCGGCGCGCCCCCGGTGCGCCGACGCTGGCCGGCCTGCGCCGGGGCGAGCGTCTCGACCTGACGCTG
CGCAGCGATGCCGCCGCGCCATTGACCTGTCGTTTCCAGCCCATGCAGCCGCTCGACGGCCTGGGACGCTCG
CTGCTGCTGGGCATGGACATCTCCGACCTCAACTGGCAGTCCGACAGCCAGCAGCACCAGTTGCAGAGCCTG
AGCCTGGGCAAGCTGATCCTTTCGCGTCTGCGCCATGTCTCCCACGGACACCTGGCGGAGGCGGTCCAGGAG
ATTCTCGAATCGCTCTCCGGCGCGTTCCAGATGCAGGCTATCGCCCTGCTGCTGGGCGACGGCAAGGGTTTC
TGCACGGTCTTCGCCAGTCATGTGCGGCCTGGCAGCGACAGTTTGCTGCGACCGACCCTGCAACTCGCCGAC
GACGACCTGCGCGAAGGGGCGGGCGCGCGCTTGCTACGCCGTGGCGAAGGCGCCTCGACGCTGCTCCGGCAG
ATCGGCGAGGACGCGCTCTACCTGGTGCCGGCGGCGATGCGCGGTGGCCGCCTGGGGGCATTGCTGGTGCGG
CCGATGTCGCTGGAGCAGCTCGCCCAGGGGCCCGCGCCGCAGGACTGGCAATACCTCGCGGAACTGCTGGCG
AACCAGGTGGCGGACCGCTGCGAACTCCACGAGCAGCACGACAGTTCGCGCAAGCTGGGGCTGTTGCAGGAG
ATGATCGGCGGCGGCTGGTGGCGTTACTGGGCGGAGCAGGAACTCTTCGAACTGGCGCCGGCCTTGCACGAC
AGCCTGGGGTTGACCGGCGAGTATCGTCGGGTGCCGCTGGAACACCTGCAGGGCCTGCTGCAACCGGCGGAC
GCCGACGAACTCGGCCTGCGCCTGCGTGCCAGCCTGCGCAGCGGCCAGGCGCTGGCCCAGGACCTTTGCCTG
CGTCAGCCGGATAGCTGCGGCGAGCGCCGCTGGCTGCGCATCGAGGGCCGACCGCTGGGGCGCGGCAGCGCG
CTGGGGCTGTCCGGCGTGCTGCTCGACATCAGCGAAGGCCGGCGCCAGGAGGAACGGGCACAGGCGGCCCAC
GCGCGGCTGCGCAGCCTGATCGACAGCGCGCCGGTGGTGATCTACGTCCAGCGGGTCGAGCAGGGACACCTG
GTGCCGGAGTTCTACAGCGAAAGCGCGAGCAACCTGCTCGGCCTCGACTTGCAGGGACAGAGTTGGCAGGCG
CTCGCCGAACGGGTGCATCCGGATGATCTGGAGGCCTTTTTCGCCCGTGGCCGCGAGTTGCTTCGCGAGGGC
CGGGTGAAGACCCGCTATCGCCTCGCCGATGGCCAGGGCAACTGGCACTGGCTCTACGACGAAGCCAAGCTG
CTGCGCGATGCCCAGGGCCTGCCCAGCGAAGCGGTGGGCCTGTGGCTGGACGTGACCGAGCAGCACCTGGCG
GCACAGCGTATCGCCGAGAGCGAGGAACGCTACCGGGTCCTGGTGGAGGATTCGCCGGCGCTGATCTGTCGC
TATACCGCCGACCTGGTGCTGACCTACGTGAACCGGACCTTCGCCGATAGCCTCGCGACCAGCCCGGAGCGC
CTGGTCGGTCGCCGGCTCGACGAGTGGCTGGCGGCGGAAGACGCCAGCGCCTTGCGCGCGCGTCTGCTGGGC
TCGCCGCGGGAGGGCGCCAGCGAGGTGCCGGAGCTGCGCTTCAACCTGCCGGGGCAACGTTTTCTCTGGCTG
GTGTGGGCCGAGCGGCCGTTGTTCGACGCCCGTGGCGAATTGTGCGAGGTACAGGCGGTGGGGCGCGACAAC
ACGCCGGTGCGCCGGGCCCAGCAGCAACTGGCGCAAGGCGCCAAGATGGCCAGCCTGGGGGAGATGGTCAGC
GGCCTCGCCCACGAGGTGAAGCAGCCGCTGCACGTGCTGCGCATGACCCTGTTCAACATGCGCCAGCGGATG
AACAGCGTCGGCCTCGACGGCGACTACCTGGGCGAGAAACTGGAGCGCATGGATGCCCAGGTCCTGCGCGTC
GACCGCCTGGTCAGTCACCTCGGCGTGTTCAGCCGCAAGTCGGCGCTGGAGGCGCTGCCGTTCGACCCCTAT
GCCGCCTTCGAAGGCGCCCTGGGCCTGCTCGGCGAGGGGCTGCGTCAGCACGCCATCGAGGTAGAGTGCCCG
GCGCCGACGCAGCGGATGGTGGTGCGAGGGCAGGCGGACCAGTTGGAGCAGGTGATCATCAACCTGCTCGCC
AACGCCCGCGATGCCCTGCTCGGCAATCCCGGCCTGGCCAGCCGGCGCGTTCGCCTGGAGCAGGTGGCCTGC
CGCGAACCGGGCTGGGTCGAATTGCACGTGCACGACAACGGCGGCGGGATAGAACCGCTCCTGCTGGAGCGG
ATATTCGAACCCTTCTTCACCACCAAGGCGGAGGGCAAGGGTACCGGCCTGGGTCTCTCGGTCAGCCACGAT
CTGGTGCGCAACATGGGCGGTAGCCTGACGGCGGCCAACCAGGGGGAGGGTGCGTTGTTCGTGGTTCGCTTG
CCGCTGGCGGCGCCCGCCGAGGCGGGCGGATGA
Translation:
MFEFSRSSSAEAERPEPFSQEGPALWSASLRSWDLCFEMDEQDRVIRVGGRQAYRLQCAHGLGEQPRPFAEY
LERRAPGAPTLAGLRRGERLDLTLRSDAAAPLTCRFQPMQPLDGLGRSLLLGMDISDLNWQSDSQQHQLQSL
SLGKLILSRLRHVSHGHLAEAVQEILESLSGAFQMQAIALLLGDGKGFCTVFASHVRPGSDSLLRPTLQLAD
DDLREGAGARLLRRGEGASTLLRQIGEDALYLVPAAMRGGRLGALLVRPMSLEQLAQGPAPQDWQYLAELLA
NQVADRCELHEQHDSSRKLGLLQEMIGGGWWRYWAEQELFELAPALHDSLGLTGEYRRVPLEHLQGLLQPAD
ADELGLRLRASLRSGQALAQDLCLRQPDSCGERRWLRIEGRPLGRGSALGLSGVLLDISEGRRQEERAQAAH
ARLRSLIDSAPVVIYVQRVEQGHLVPEFYSESASNLLGLDLQGQSWQALAERVHPDDLEAFFARGRELLREG
RVKTRYRLADGQGNWHWLYDEAKLLRDAQGLPSEAVGLWLDVTEQHLAAQRIAESEERYRVLVEDSPALICR
YTADLVLTYVNRTFADSLATSPERLVGRRLDEWLAAEDASALRARLLGSPREGASEVPELRFNLPGQRFLWL
VWAERPLFDARGELCEVQAVGRDNTPVRRAQQQLAQGAKMASLGEMVSGLAHEVKQPLHVLRMTLFNMRQRM
NSVGLDGDYLGEKLERMDAQVLRVDRLVSHLGVFSRKSALEALPFDPYAAFEGALGLLGEGLRQHAIEVECP
APTQRMVVRGQADQLEQVIINLLANARDALLGNPGLASRRVRLEQVACREPGWVELHVHDNGGGIEPLLLER
IFEPFFTTKAEGKGTGLGLSVSHDLVRNMGGSLTAANQGEGALFVVRLPLAAPAEAGG*
AnnotationID:110GeneID:100
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:40
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA4293
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sensory box histidine kinase
Functional Category Confidence Code:5
COGs:COG0642,COG3852
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58262.1| (AE016873) sensory box histidine kinase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 899

 Score =  570 bits (1468), Expect = e-161
 Identities = 363/884 (41%), Positives = 492/884 (55%), Gaps = 58/884 (6%)






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  99.7% aligned
Score =  120 bits (300), Expect = 1e-27
Identities = 81/337 (24%), Positives = 129/337 (38%), Gaps = 21/337 (6%)

COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific 
[Signal transduction mechanisms]
CD-Length = 363 residues,  92.8% aligned
Score =  104 bits (260), Expect = 6e-23
Identities = 93/352 (26%), Positives = 143/352 (40%), Gaps = 24/352 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:203




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17345




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36655




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:100_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:100
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
196
                           PA4293_tr
                           translation of PA4293
                           922
                           99.67
                           99.67
                           0
                           4714.0
     

     
     
14711
                           gb|AAG07681.1|AE004845_7
                           (AE004845) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           922
                           99.67
                           99.67
                           0
                           4714.0
     

     
     
14712
                           gb|AAO58262.1|
                           (AE016873) sensory box histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           972
                           38.99
                           53.08
                           123
                           1521.0
     

     
     
197
                           PA5512_tr
                           translation of PA5512
                           1006
                           18.88
                           27.13
                           502
                           380.0
     

     
     
14713
                           gb|AAG08897.1|AE004963_10
                           (AE004963) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           1006
                           18.88
                           27.13
                           502
                           380.0
     

     






      

          
GC ORFID: 43102How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4293Glimmer Score: 

          
Start: 4246470Stop: 4243702

          
Length: 2769


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4293 translation of PA4293Homolog Bit Score 1820.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5320 (ORF: BLASTX 576.0), t_PA4293 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGAATTTTCCCGCTCGTCGTCCGCCGAGGCCGAGAGGCCGGAACCCTTTTCGCAGGAAGGCCCCGCC 
CTCTGGAGCGCTTCGCTGAGGAGTTGGGACCTGTGTTTCGAGATGGACGAACAGGACCGCGTGATCCGGGTC 
GGCGGGCGGCAGGCGTATCGTCTGCAGTGCGCCCATGGGCTTGGCGAACAGCCGCGGCCTTTCGCCGAGTAT 
CTGGAGCGGCGCGCCCCCGGTGCGCCGACGCTGGCCGGCCTGCGCCGGGGCGAGCGTCTCGACCTGACGCTG 
CGCAGCGATGCCGCCGCGCCATTGACCTGTCGTTTCCAGCCCATGCAGCCGCTCGACGGCCTGGGACGCTCG 
CTGCTGCTGGGCATGGACATCTCCGACCTCAACTGGCAGTCCGACAGCCAGCAGCACCAGTTGCAGAGCCTG 
AGCCTGGGCAAGCTGATCCTTTCGCGTCTGCGCCATGTCTCCCACGGACACCTGGCGGAGGCGGTCCAGGAG 
ATTCTCGAATCGCTCTCCGGCGCGTTCCAGATGCAGGCTATCGCCCTGCTGCTGGGCGACGGCAAGGGTTTC 
TGCACGGTCTTCGCCAGTCATGTGCGGCCTGGCAGCGACAGTTTGCTGCGACCGACCCTGCAACTCGCCGAC 
GACGACCTGCGCGAAGGGGCGGGCGCGCGCTTGCTACGCCGTGGCGAAGGCGCCTCGACGCTGCTCCGGCAG 
ATCGGCGAGGACGCGCTCTACCTGGTGCCGGCGGCGATGCGCGGTGGCCGCCTGGGGGCATTGCTGGTGCGG 
CCGATGTCGCTGGAGCAGCTCGCCCAGGGGCCCGCGCCGCAGGACTGGCAATACCTCGCGGAACTGCTGGCG 
AACCAGGTGGCGGACCGCTGCGAACTCCACGAGCAGCACGACAGTTCGCGCAAGCTGGGGCTGTTGCAGGAG 
ATGATCGGCGGCGGCTGGTGGCGTTACTGGGCGGAGCAGGAACTCTTCGAACTGGCGCCGGCCTTGCACGAC 
AGCCTGGGGTTGACCGGCGAGTATCGTCGGGTGCCGCTGGAACACCTGCAGGGCCTGCTGCAACCGGCGGAC 
GCCGACGAACTCGGCCTGCGCCTGCGTGCCAGCCTGCGCAGCGGCCAGGCGCTGGCCCAGGACCTTTGCCTG 
CGTCAGCCGGATAGCTGCGGCGAGCGCCGCTGGCTGCGCATCGAGGGCCGACCGCTGGGGCGCGGCAGCGCG 
CTGGGGCTGTCCGGCGTGCTGCTCGACATCAGCGAAGGCCGGCGCCAGGAGGAACGGGCACAGGCGGCCCAC 
GCGCGGCTGCGCAGCCTGATCGACAGCGCGCCGGTGGTGATCTACGTCCAGCGGGTCGAGCAGGGACACCTG 
GTGCCGGAGTTCTACAGCGAAAGCGCGAGCAACCTGCTCGGCCTCGACTTGCAGGGACAGAGTTGGCAGGCG 
CTCGCCGAACGGGTGCATCCGGATGATCTGGAGGCCTTTTTCGCCCGTGGCCGCGAGTTGCTTCGCGAGGGC 
CGGGTGAAGACCCGCTATCGCCTCGCCGATGGCCAGGGCAACTGGCACTGGCTCTACGACGAAGCCAAGCTG 
CTGCGCGATGCCCAGGGCCTGCCCAGCGAAGCGGTGGGCCTGTGGCTGGACGTGACCGAGCAGCACCTGGCG 
GCACAGCGTATCGCCGAGAGCGAGGAACGCTACCGGGTCCTGGTGGAGGATTCGCCGGCGCTGATCTGTCGC 
TATACCGCCGACCTGGTGCTGACCTACGTGAACCGGACCTTCGCCGATAGCCTCGCGACCAGCCCGGAGCGC 
CTGGTCGGTCGCCGGCTCGACGAGTGGCTGGCGGCGGAAGACGCCAGCGCCTTGCGCGCGCGTCTGCTGGGC 
TCGCCGCGGGAGGGCGCCAGCGAGGTGCCGGAGCTGCGCTTCAACCTGCCGGGGCAACGTTTTCTCTGGCTG 
GTGTGGGCCGAGCGGCCGTTGTTCGACGCCCGTGGCGAATTGTGCGAGGTACAGGCGGTGGGGCGCGACAAC 
ACGCCGGTGCGCCGGGCCCAGCAGCAACTGGCGCAAGGCGCCAAGATGGCCAGCCTGGGGGAGATGGTCAGC 
GGCCTCGCCCACGAGGTGAAGCAGCCGCTGCACGTGCTGCGCATGACCCTGTTCAACATGCGCCAGCGGATG 
AACAGCGTCGGCCTCGACGGCGACTACCTGGGCGAGAAACTGGAGCGCATGGATGCCCAGGTCCTGCGCGTC 
GACCGCCTGGTCAGTCACCTCGGCGTGTTCAGCCGCAAGTCGGCGCTGGAGGCGCTGCCGTTCGACCCCTAT 
GCCGCCTTCGAAGGCGCCCTGGGCCTGCTCGGCGAGGGGCTGCGTCAGCACGCCATCGAGGTAGAGTGCCCG 
GCGCCGACGCAGCGGATGGTGGTGCGAGGGCAGGCGGACCAGTTGGAGCAGGTGATCATCAACCTGCTCGCC 
AACGCCCGCGATGCCCTGCTCGGCAATCCCGGCCTGGCCAGCCGGCGCGTTCGCCTGGAGCAGGTGGCCTGC 
CGCGAACCGGGCTGGGTCGAATTGCACGTGCACGACAACGGCGGCGGGATAGAACCGCTCCTGCTGGAGCGG 
ATATTCGAACCCTTCTTCACCACCAAGGCGGAGGGCAAGGGTACCGGCCTGGGTCTCTCGGTCAGCCACGAT 
CTGGTGCGCAACATGGGCGGTAGCCTGACGGCGGCCAACCAGGGGGAGGGTGCGTTGTTCGTGGTTCGCTTG 
CCGCTGGCGGCGCCCGCCGAGGCGGGCGGATGA