Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03409.1|AE004441_10 (AE004441) polypeptide deformylas... 338 6e-93
gb|AAO53731.1| (AE016856) polypeptide deformylase [Pseudomo... 301 1e-81
gb|AAN65702.1|AE016196_13 (AE016774) polypeptide deformylas... 291 1e-78
emb|CAE30745.1| (BX640437) polypeptide deformylase [Bordete... 213 3e-55
emb|CAE44880.1| (BX640412) polypeptide deformylase [Bordete... 213 3e-55
emb|CAE39984.1| (BX640423) polypeptide deformylase [Bordete... 213 3e-55
emb|CAD13598.1| (AL646057) PROBABLE POLYPEPTIDE DEFORMYLASE... 208 1e-53
gb|AAM38643.1| (AE012029) polypeptide deformylase [Xanthomo... 205 8e-53
gb|AAO29597.1| (AE012559) polypeptide deformylase [Xylella ... 204 1e-52
gb|AAM43006.1| (AE012495) polypeptide deformylase [Xanthomo... 204 1e-52
gb|AAF83736.1|AE003931_13 (AE003931) polypeptide deformylas... 204 1e-52
emb|CAB83478.1| (AL162752) polypeptide deformylase [Neisser... 201 1e-51
gb|AAF40569.1| (AE002369) polypeptide deformylase [Neisseri... 201 1e-51
dbj|BAC53374.1| (AP005964) polypeptide deformylase [Bradyrh... 195 8e-50
gb|AAL22269.1| (AE008857) peptide deformylase [Salmonella t... 194 2e-49
gb|AAP18590.1| (AE016989) peptide deformylase [Shigella fle... 192 7e-49
gb|AAN44781.1|AE015342_8 (AE015342) peptide deformylase [Sh... 192 7e-49
gb|AAO71565.1| (AE016848) polypeptide deformylase [Salmonel... 192 9e-49
emb|CAD09179.1| (AL627282) polypeptide deformylase [Salmone... 192 9e-49
gb|AAO09535.1|AE016800_140 (AE016800) N-formylmethionyl-tRN... 191 1e-48
gb|AAN82485.1|AE016767_245 (AE016767) Peptide deformylase [... 191 2e-48
emb|CAA54367.1| (X77091) N-formylmethionylaminoacyl-tRNA de... 191 2e-48
emb|CAA54826.1| (X77800) deformylase [Escherichia coli] 191 2e-48
emb|CAA45206.1| (X63666) fms [Escherichia coli] 191 2e-48
gb|AAG58408.1|AE005556_1 (AE005556) peptide deformylase [Es... 191 2e-48
gb|AAC76312.1| (AE000407) peptide deformylase [Escherichia ... 191 2e-48
dbj|BAC61305.1| (AP005083) polypeptide deformylase [Vibrio ... 191 2e-48
gb|AAA58084.1| (U18997) N-formylmethionylaminoacyl-tRNA def... 191 2e-48
dbj|BAB37575.1| (AP002564) peptide deformylase [Escherichia... 191 2e-48
gb|AAN53119.1|AE015454_13 (AE015454) polypeptide deformylas... 190 3e-48
gb|AAF93224.1| (AE004095) polypeptide deformylase [Vibrio c... 190 3e-48
gb|AAM87567.1|AE014004_5 (AE014004) peptide deformylase [Ye... 188 1e-47
emb|CAC89102.1| (AJ414141) polypeptide deformylase [Yersini... 188 1e-47
gb|AAF23793.1|AF213822_8 (AF213822) polypeptide deformylase... 184 1e-46
gb|AAK03643.1| (AE006193) Def [Pasteurella multocida] 180 4e-45
gb|AAC22282.1| (U32745) polypeptide deformylase (def) [Haem... 178 1e-44
emb|CAD85881.1| (BX321862) Formylmethionine deformylase [Ni... 177 3e-44
dbj|BAB51419.1| (AP003005) N-formylmethionylaminoacyl-tRNA ... 175 1e-43
emb|CAC41856.1| (AL591783) PROBABLE POLYPEPTIDE DEFORMYLASE... 172 6e-43
gb|AAL53505.1| (AE009665) POLYPEPTIDE DEFORMYLASE [Brucella... 168 1e-41
gb|AAN34202.1|AE014596_7 (AE014596) polypeptide deformylase... 168 1e-41
gb|AAK22259.1| (AE005700) polypeptide deformylase [Caulobac... 167 3e-41
gb|AAL41388.1| (AE009008) polypeptide deformylase [Agrobact... 164 3e-40
gb|AAK86183.1| (AE007974) AGR_C_640p [Agrobacterium tumefac... 164 3e-40
gb|AAP96618.1| (AE017156) peptide deformylase; formylmethio... 161 1e-39
emb|CAD83734.1| (BX248584) polypeptide deformylase [Candida... 158 1e-38
dbj|BAB13189.1| (AP001119) polypeptide deformylase [Buchner... 155 9e-38
gb|AAO07786.1|AE016811_27 (AE016811) N-formylmethionyl-tRNA... 150 3e-36
dbj|BAC24642.1| (AB063522) def [Wigglesworthia brevipalpis]... 148 1e-35
dbj|BAC62127.1| (AP005086) polypeptide deformylase [Vibrio ... 148 1e-35
gb|AAL54054.1| (AE009715) POLYPEPTIDE DEFORMYLASE [Brucella... 147 3e-35
gb|AAN33648.1|AE014543_12 (AE014543) polypeptide deformylas... 147 3e-35
gb|AAM68020.1| (AE014124) polypeptide deformylase [Buchnera... 147 3e-35
gb|AAO90514.1| (AE016963) polypeptide deformylase [Coxiella... 145 1e-34
gb|AAF76758.1|AF218073_7 (AF218073) unknown [Escherichia coli] 145 1e-34
gb|AAN55560.1|AE015695_2 (AE015695) polypeptide deformylase... 144 2e-34
gb|AAL95353.1| (AE010621) Polypeptide deformylase [Fusobact... 144 3e-34
gb|AAF96063.1| (AE004356) polypeptide deformylase [Vibrio c... 142 8e-34
gb|AAO27145.1| (AE014017) polypeptide deformylase [Buchnera... 141 2e-33
emb|CAA11508.1| (AJ223631) hypothetical protein [Escherichi... 140 3e-33
gb|AAP77166.1| (AE017145) N-formylmethionyl-tRNA deformylas... 138 2e-32
emb|CAC45981.1| (AL591787) PUTATIVE POLYPEPTIDE DEFORMYLASE... 137 2e-32
emb|CAE18527.1| (BX572090) putative formylmethionine deform... 135 8e-32
gb|AAD07841.1| (AE000591) polypeptide deformylase (def) [He... 135 8e-32
gb|AAD09580.1| (U76255) N-formylmethionylaminoacyl-tRNA def... 134 3e-31
gb|AAD06310.1| (AE001504) POLYPEPTIDE DEFORMYLASE [Helicoba... 133 4e-31
gb|AAN49637.1|AE011411_8 (AE011411) Polypeptide deformylase... 133 5e-31
gb|AAK70806.1| (AY040678) peptide deformylase [Leptospira i... 133 5e-31
gb|AAL02816.1| (AE008593) polypeptide deformylase [EC:3.5.1... 131 2e-30
emb|CAA71353.1| (Y10305) polypeptide deformylase [Tolypothr... 130 2e-30
dbj|BAC49270.1| (AP005949) polypeptide deformylase [Bradyrh... 129 5e-30
emb|CAA14673.1| (AJ235270) METHIONYL-TRNA DEFORMYLASE (def)... 129 7e-30
dbj|BAB98994.1| (AP005279) N-formylmethionyl-tRNA deformyla... 129 7e-30
emb|CAB72674.1| (AL139074) polypeptide deformylase [Campylo... 129 9e-30
gb|AAL03212.1| (AE008626) polypeptide deformylase [EC:3.5.1... 127 3e-29
dbj|BAB74778.1| (AP003591) polypeptide deformylase [Nostoc ... 127 4e-29
dbj|BAB81450.1| (AP003191) polypeptide deformylase [Clostri... 126 6e-29
emb|CAE21776.1| (BX572099) putative formylmethionine deform... 125 8e-29
dbj|BAC09228.1| (AP005374) polypeptide deformylase [Thermos... 125 8e-29
gb|AAP99127.1| (AE017161) N-formylmethionyl-tRNA deformylas... 125 1e-28
gb|AAO35788.1| (AE015940) polypeptide deformylase [Clostrid... 125 1e-28
emb|CAE06839.1| (BX569689) putative formylmethionine deform... 125 1e-28
gb|AAL42555.1| (AE009113) polypeptide deformylase [Agrobact... 124 3e-28
gb|AAK87337.1| (AE008078) AGR_C_2856p [Agrobacterium tumefa... 124 3e-28
gb|AAC06802.1| (AE000696) polypeptide deformylase [Aquifex ... 123 5e-28
gb|AAM24725.1| (AE013107) N-formylmethionyl-tRNA deformylas... 123 5e-28
dbj|BAC18530.1| (AP005219) putative polypeptide deformylase... 122 7e-28
gb|AAO75527.1| (AE016927) peptide deformylase(PDF) [Bactero... 122 1e-27
dbj|BAA17481.1| (D90906) polypeptide deformylase [Synechocy... 121 1e-27
gb|AAC65724.1| (AE001247) polypeptide deformylase (def) [Tr... 120 3e-27
emb|CAD77822.1| (BX294155) peptide deformylase [Pirellula sp.] 120 4e-27
gb|AAN87521.1| (AY142917) Polypeptide deformylase [Heliobac... 118 2e-26
gb|AAK79688.1|AE007681_9 (AE007681) N-formylmethionyl-tRNA ... 118 2e-26
gb|AAB50347.1| (U52368) deformylase [Clostridium acetobutyl... 118 2e-26
emb|CAA71356.1| (Y10306) polypeptide deformylase [Thermotog... 117 2e-26
gb|AAD36728.1|AE001808_3 (AE001808) polypeptide deformylase... 117 2e-26
gb|AAM72682.1| (AE012902) polypeptide deformylase [Chlorobi... 116 6e-26
gb|AAF39461.1| (AE002332) polypeptide deformylase [Chlamydi... 115 8e-26
emb|CAE40418.1| (BX640411) peptide deformylase [Bordetella ... 114 2e-25
emb|CAE38944.1| (BX640434) peptide deformylase [Bordetella ... 114 2e-25
>gb|AAG03409.1|AE004441_10 (AE004441) polypeptide deformylase [Pseudomonas aeruginosa PAO1]
Length = 168
Score = 338 bits (868), Expect = 6e-93
Identities = 167/168 (99%), Positives = 168/168 (100%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV
Sbjct: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
MDLSEDKSEPRVFINPEFEPLTE+MDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF
Sbjct: 61 MDLSEDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
Sbjct: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
>gb|AAO53731.1| (AE016856) polypeptide deformylase [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 168
Score = 301 bits (771), Expect = 1e-81
Identities = 144/168 (85%), Positives = 156/168 (92%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MAILNILEFPD RLRT+AKPV +VDD +RQL+DDMFETMYEAPGIGLAATQVNVHKR+VV
Sbjct: 1 MAILNILEFPDSRLRTLAKPVAMVDDGIRQLVDDMFETMYEAPGIGLAATQVNVHKRVVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
MDLSED+S P VFINPE E LT+EMDQYQEGCLSVPGFYENVDRPQKVR+KALDRDG P+
Sbjct: 61 MDLSEDRSAPMVFINPEIEKLTDEMDQYQEGCLSVPGFYENVDRPQKVRVKALDRDGKPY 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E VAEGLLA+CIQHECDHLNGKLFVDYLS LKRDRI+KKLEKQH+ A
Sbjct: 121 ELVAEGLLAICIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHKLNA 168
>gb|AAN65702.1|AE016196_13 (AE016774) polypeptide deformylase [Pseudomonas putida KT2440]
Length = 168
Score = 291 bits (744), Expect = 1e-78
Identities = 142/168 (84%), Positives = 152/168 (90%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MAILNILEFPDPRLRT+AKPV DDA+RQLIDDMFETMYEAPGIGLAATQVNVHK++VV
Sbjct: 1 MAILNILEFPDPRLRTLAKPVTEFDDALRQLIDDMFETMYEAPGIGLAATQVNVHKQVVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
MDLSED+SEPRVFINP E LT +M QYQEGCLSVPGFYENVDRP +VR+KA DRDG PF
Sbjct: 61 MDLSEDRSEPRVFINPSVEELTHDMGQYQEGCLSVPGFYENVDRPLRVRVKAQDRDGKPF 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E EGLLAVC+QHE DHLNGKLFVDYLS LKRDRI+KKLEKQHRQQA
Sbjct: 121 ELECEGLLAVCVQHEFDHLNGKLFVDYLSQLKRDRIKKKLEKQHRQQA 168
>emb|CAE30745.1| (BX640437) polypeptide deformylase [Bordetella bronchiseptica]
Length = 170
Score = 213 bits (543), Expect = 3e-55
Identities = 99/166 (59%), Positives = 134/166 (80%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+L+IL +PDPRL AKPV VVDD +RQL+ DM +TMY+APG+GLAATQV+VH+R+VV
Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE+ ++ RV INPE ++E Y+EGCLSVPG Y+ V+R ++R KALD+ G P+
Sbjct: 61 IDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPY 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
E A+GLLAVC+QHE DHL+GK+FV+YLS LK++RI+ KL+K R+
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAERE 166
>emb|CAE44880.1| (BX640412) polypeptide deformylase [Bordetella pertussis]
Length = 170
Score = 213 bits (543), Expect = 3e-55
Identities = 99/166 (59%), Positives = 134/166 (80%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+L+IL +PDPRL AKPV VVDD +RQL+ DM +TMY+APG+GLAATQV+VH+R+VV
Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE+ ++ RV INPE ++E Y+EGCLSVPG Y+ V+R ++R KALD+ G P+
Sbjct: 61 IDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPY 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
E A+GLLAVC+QHE DHL+GK+FV+YLS LK++RI+ KL+K R+
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAERE 166
>emb|CAE39984.1| (BX640423) polypeptide deformylase [Bordetella parapertussis]
Length = 170
Score = 213 bits (543), Expect = 3e-55
Identities = 99/166 (59%), Positives = 134/166 (80%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+L+IL +PDPRL AKPV VVDD +RQL+ DM +TMY+APG+GLAATQV+VH+R+VV
Sbjct: 1 MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE+ ++ RV INPE ++E Y+EGCLSVPG Y+ V+R ++R KALD+ G P+
Sbjct: 61 IDVSEEGNDLRVLINPEITWKSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPY 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
E A+GLLAVC+QHE DHL+GK+FV+YLS LK++RI+ KL+K R+
Sbjct: 121 EFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKLKKAERE 166
>emb|CAD13598.1| (AL646057) PROBABLE POLYPEPTIDE DEFORMYLASE PROTEIN [Ralstonia
solanacearum]
Length = 169
Score = 208 bits (529), Expect = 1e-53
Identities = 99/168 (58%), Positives = 131/168 (77%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+LNIL++PDPRL +AKPV VVDD +R+L+ DM ETMY+APGIGLAATQV+VH+R++
Sbjct: 1 MALLNILQYPDPRLHKVAKPVAVVDDRIRKLVADMAETMYDAPGIGLAATQVDVHERVIT 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE + E RVFINPE +E + EGCLSVP Y+ V+RP +VR++AL+ G F
Sbjct: 61 IDVSESRDELRVFINPEIVWASEARKVWDEGCLSVPDIYDKVERPDRVRVRALNEKGESF 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E +GLLAVCIQHE DHL GK+FV+YLS LK++RI+ KL+K ++A
Sbjct: 121 ELETDGLLAVCIQHEMDHLMGKVFVEYLSPLKQNRIKIKLKKHQLERA 168
>gb|AAM38643.1| (AE012029) polypeptide deformylase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 170
Score = 205 bits (522), Expect = 8e-53
Identities = 106/172 (61%), Positives = 133/172 (77%), Gaps = 6/172 (3%)
Query: 1 MAILNILEFPDPRLRTIAKPV---EVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKR 57
MA+L ILEFPDPRLRT A PV EV A + L+DDMF TMYEAPGIGLAA+QV+VHKR
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVTSQAFQTLLDDMFHTMYEAPGIGLAASQVDVHKR 60
Query: 58 IVVMDLSEDKSEPRVFINPEFEPLTEEMDQ-YQEGCLSVPGFYENVDRPQKVRIKALDRD 116
+V+D+S++K+ P+VF+NPE ++++ +Q YQEGCLSVPG Y +V R + ++ LDR
Sbjct: 61 FMVIDISDEKNLPQVFVNPEI--VSKQGEQLYQEGCLSVPGIYADVSRADAITVRYLDRQ 118
Query: 117 GNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
G P E A+GLLAVCIQHE DHL+GKLFVDYLS LKR+ +RKKL KQ + A
Sbjct: 119 GQPQELHADGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKQRKHVA 170
>gb|AAO29597.1| (AE012559) polypeptide deformylase [Xylella fastidiosa Temecula1]
Length = 170
Score = 204 bits (520), Expect = 1e-52
Identities = 108/170 (63%), Positives = 132/170 (77%), Gaps = 6/170 (3%)
Query: 1 MAILNILEFPDPRLRTIAKPV---EVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKR 57
MA+L ILEFPDPRLRT A V EVV + + L+DDMFETMY APGIGLAATQVNVH+R
Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60
Query: 58 IVVMDLSEDKSEPRVFINPEFEPLTEEMDQ-YQEGCLSVPGFYENVDRPQKVRIKALDRD 116
+V+D+SE+K+ P VFINPE +T E DQ +QEGCLSVPG + +V R + ++ LDR
Sbjct: 61 FMVIDVSEEKNVPMVFINPEI--VTREGDQVFQEGCLSVPGIHADVTRALSIVVRFLDRH 118
Query: 117 GNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
G+ + AEGLLAVCIQHE DHL+GKLF+DYLS LKRD +R+KLEKQ R+
Sbjct: 119 GDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRRR 168
>gb|AAM43006.1| (AE012495) polypeptide deformylase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 170
Score = 204 bits (520), Expect = 1e-52
Identities = 107/172 (62%), Positives = 131/172 (76%), Gaps = 6/172 (3%)
Query: 1 MAILNILEFPDPRLRTIAKPV---EVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKR 57
MA+L ILEFPDPRLRT A PV EVV A + L+DDMF+TMYEAPGIGLAA+QV+VHKR
Sbjct: 1 MALLPILEFPDPRLRTKAVPVDAAEVVSPAFQTLLDDMFQTMYEAPGIGLAASQVDVHKR 60
Query: 58 IVVMDLSEDKSEPRVFINPEFEPLTEEMDQ-YQEGCLSVPGFYENVDRPQKVRIKALDRD 116
+V+D+SE+K P+VFINPE +T + +Q YQEGCLSVPG + +V R + ++ LDR
Sbjct: 61 FMVIDVSEEKDAPQVFINPEI--VTRQGEQVYQEGCLSVPGIFADVSRADAITVRYLDRQ 118
Query: 117 GNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
G P E +GLLAVCIQHE DHL+GKLFVDYLS LKR+ +RKKL K + A
Sbjct: 119 GQPQELSTDGLLAVCIQHEMDHLDGKLFVDYLSPLKREMVRKKLAKLRKHVA 170
>gb|AAF83736.1|AE003931_13 (AE003931) polypeptide deformylase [Xylella fastidiosa 9a5c]
Length = 170
Score = 204 bits (520), Expect = 1e-52
Identities = 108/170 (63%), Positives = 132/170 (77%), Gaps = 6/170 (3%)
Query: 1 MAILNILEFPDPRLRTIAKPV---EVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKR 57
MA+L ILEFPDPRLRT A V EVV + + L+DDMFETMY APGIGLAATQVNVH+R
Sbjct: 1 MALLPILEFPDPRLRTKAVRVGVAEVVSSSFQTLLDDMFETMYAAPGIGLAATQVNVHQR 60
Query: 58 IVVMDLSEDKSEPRVFINPEFEPLTEEMDQ-YQEGCLSVPGFYENVDRPQKVRIKALDRD 116
+V+D+SE+K+ P VFINPE +T E DQ +QEGCLSVPG + +V R + ++ LDR
Sbjct: 61 FMVIDVSEEKNVPMVFINPEI--VTREGDQVFQEGCLSVPGIHADVTRALSIVVRFLDRH 118
Query: 117 GNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
G+ + AEGLLAVCIQHE DHL+GKLF+DYLS LKRD +R+KLEKQ R+
Sbjct: 119 GDEQQLTAEGLLAVCIQHEMDHLDGKLFIDYLSPLKRDMVRRKLEKQRRR 168
>emb|CAB83478.1| (AL162752) polypeptide deformylase [Neisseria meningitidis Z2491]
Length = 167
Score = 201 bits (512), Expect = 1e-51
Identities = 99/165 (60%), Positives = 130/165 (78%), Gaps = 1/165 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+LNIL++PD RL T+AKPVE VD+ +R+LI DMFETMYE+ GIGLAATQV+VH+R+VV
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
MDL+ED+SEPRVFINP E Y+EGCLSVPG Y+ V R ++V+++AL+ G F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGE-TTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
A+GLLA+C+QHE DHL G +FV+ LS LK+ RI+ KL+K+ +
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>gb|AAF40569.1| (AE002369) polypeptide deformylase [Neisseria meningitidis MC58]
Length = 167
Score = 201 bits (512), Expect = 1e-51
Identities = 99/165 (60%), Positives = 130/165 (78%), Gaps = 1/165 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+LNIL++PD RL T+AKPVE VD+ +R+LI DMFETMYE+ GIGLAATQV+VH+R+VV
Sbjct: 1 MALLNILQYPDERLHTVAKPVEQVDERIRKLIADMFETMYESRGIGLAATQVDVHERVVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
MDL+ED+SEPRVFINP E Y+EGCLSVPG Y+ V R ++V+++AL+ G F
Sbjct: 61 MDLTEDRSEPRVFINPVIVEKDGE-TTYEEGCLSVPGIYDTVTRAERVKVEALNEKGEKF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
A+GLLA+C+QHE DHL G +FV+ LS LK+ RI+ KL+K+ +
Sbjct: 120 TLEADGLLAICVQHELDHLMGIVFVERLSQLKQGRIKTKLKKRQK 164
>dbj|BAC53374.1| (AP005964) polypeptide deformylase [Bradyrhizobium japonicum USDA
110]
Length = 174
Score = 195 bits (496), Expect = 8e-50
Identities = 98/168 (58%), Positives = 120/168 (71%), Gaps = 6/168 (3%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+ I+ PD +LR ++KP+E V +R+L DDMFETMY+APGIGLAA Q+ R++
Sbjct: 1 MALREIIILPDKQLRLVSKPIEKVTTEIRKLADDMFETMYDAPGIGLAAIQIAQPLRLIT 60
Query: 61 MDLS------EDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALD 114
MDL+ E K EPRVFINPE +EE+ Y+EGCLS+P +YE V+RP KVR++ D
Sbjct: 61 MDLAKRDENGETKPEPRVFINPEVIASSEELSVYEEGCLSIPEYYEEVERPAKVRVRFTD 120
Query: 115 RDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162
DG EE AEGL A CIQHE DHLNG LFVDYLS LKRDR+ KK EK
Sbjct: 121 LDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYLSKLKRDRVLKKFEK 168
>gb|AAL22269.1| (AE008857) peptide deformylase [Salmonella typhimurium LT2]
Length = 169
Score = 194 bits (492), Expect = 2e-49
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDGNPF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGNPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLNA 167
>gb|AAP18590.1| (AE016989) peptide deformylase [Shigella flexneri 2a str. 2457T]
Length = 169
Score = 192 bits (488), Expect = 7e-49
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E AEGLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>gb|AAN44781.1|AE015342_8 (AE015342) peptide deformylase [Shigella flexneri 2a str. 301]
Length = 169
Score = 192 bits (488), Expect = 7e-49
Identities = 97/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E AEGLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>gb|AAO71565.1| (AE016848) polypeptide deformylase [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
Length = 169
Score = 192 bits (487), Expect = 9e-49
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDR+GNPF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRNGNPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLNA 167
>emb|CAD09179.1| (AL627282) polypeptide deformylase [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 169
Score = 192 bits (487), Expect = 9e-49
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDR+GNPF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRNGNPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVEKLDRLNA 167
>gb|AAO09535.1|AE016800_140 (AE016800) N-formylmethionyl-tRNA deformylase [Vibrio vulnificus
CMCP6]
Length = 170
Score = 191 bits (486), Expect = 1e-48
Identities = 98/165 (59%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L FPD RLRT+AKPVE V +++++DDM ETMY+ GIGLAATQV++H+RIVV
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEKVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHQRIVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE ++EP V INPE E D +EGCLSVPG V R +V +KALDRDG+ F
Sbjct: 61 IDISESRNEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGHEF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
A+ LLA+CIQHE DHL GKLFVDYLS LKR RI+ KL K R
Sbjct: 120 TLEADDLLAICIQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKR 164
>gb|AAN82485.1|AE016767_245 (AE016767) Peptide deformylase [Escherichia coli CFT073]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>emb|CAA54367.1| (X77091) N-formylmethionylaminoacyl-tRNA deformylase; peptide
deformylase [Escherichia coli]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>emb|CAA54826.1| (X77800) deformylase [Escherichia coli]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>emb|CAA45206.1| (X63666) fms [Escherichia coli]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>gb|AAG58408.1|AE005556_1 (AE005556) peptide deformylase [Escherichia coli O157:H7 EDL933]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>gb|AAC76312.1| (AE000407) peptide deformylase [Escherichia coli K12]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>dbj|BAC61305.1| (AP005083) polypeptide deformylase [Vibrio parahaemolyticus]
Length = 172
Score = 191 bits (485), Expect = 2e-48
Identities = 97/165 (58%), Positives = 120/165 (72%), Gaps = 1/165 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L FPD RLRT+AKPV+ V +++++DDM ETMY+ GIGLAATQV++HKRIVV
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVDAVTPEIQKIVDDMIETMYDEEGIGLAATQVDIHKRIVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE + EP V INPE E D +EGCLSVPG V R +V +KALDRDG F
Sbjct: 61 IDISETRDEPMVLINPEILEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRDGKEF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
A+ LLA+C+QHE DHL GKLFVDYLS LKR RI+ KL K R
Sbjct: 120 TFEADDLLAICVQHELDHLQGKLFVDYLSPLKRKRIQDKLAKIKR 164
>gb|AAA58084.1| (U18997) N-formylmethionylaminoacyl-tRNA deformylase [Escherichia
coli]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>dbj|BAB37575.1| (AP002564) peptide deformylase [Escherichia coli O157:H7]
Length = 169
Score = 191 bits (485), Expect = 2e-48
Identities = 96/168 (57%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L PD RLR +AKPVE V+ +++++DDMFETMY GIGLAATQV++H+RI+V
Sbjct: 1 MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ E V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDVSENRDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E A+GLLA+CIQHE DHL GKLF+DYLS LK+ RIR+K+EK R +A
Sbjct: 120 ELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKA 167
>gb|AAN53119.1|AE015454_13 (AE015454) polypeptide deformylase [Shewanella oneidensis MR-1]
Length = 168
Score = 190 bits (483), Expect = 3e-48
Identities = 96/168 (57%), Positives = 120/168 (71%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+L +L FPD RLRT A P+ + ++ IDDMFETMY+ GIGLAATQV+ HK+++V
Sbjct: 1 MALLKVLRFPDERLRTQATPITEFNAELQTQIDDMFETMYQEKGIGLAATQVDYHKQLIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
MDL ++ P+VFINPE + + +EGCLSVPG Y VDR + V +KALDR GN F
Sbjct: 61 MDLQDEVERPKVFINPEIIASSGDFCN-EEGCLSVPGIYAKVDRAEFVTVKALDRHGNEF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
A+ L A+CIQHE DHL GKLFVDYLS LKR RI++KLEK +Q A
Sbjct: 120 TVEADDLFAICIQHEMDHLKGKLFVDYLSPLKRQRIKQKLEKAAKQDA 167
>gb|AAF93224.1| (AE004095) polypeptide deformylase [Vibrio cholerae]
Length = 169
Score = 190 bits (483), Expect = 3e-48
Identities = 96/165 (58%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L FPD RLRT+AKPVE V ++Q++DDM ETMY GIGLAATQV++H+RIVV
Sbjct: 1 MSVLQVLTFPDDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE + +P V INPE E D +EGCLSVPG V R +V +KALDR+G +
Sbjct: 61 IDISETRDQPMVLINPEIIEKRGE-DGIEEGCLSVPGARALVPRAAEVTVKALDRNGQEY 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
+ A+ LLA+C+QHE DHL GKLFVDYLS LKR+RI++KLEK R
Sbjct: 120 QFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKLEKIKR 164
>gb|AAM87567.1|AE014004_5 (AE014004) peptide deformylase [Yersinia pestis KIM]
Length = 170
Score = 188 bits (478), Expect = 1e-47
Identities = 95/168 (56%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L +PD RLR IA PV+ V+ +++++DDMFETMY GIGLAATQV+VH++I+V
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ + V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E +GLLA+CIQHE DHL GKLFVDYLS LKR RIR+KLEK + A
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKLNA 167
>emb|CAC89102.1| (AJ414141) polypeptide deformylase [Yersinia pestis CO92]
Length = 170
Score = 188 bits (478), Expect = 1e-47
Identities = 95/168 (56%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L +L +PD RLR IA PV+ V+ +++++DDMFETMY GIGLAATQV+VH++I+V
Sbjct: 1 MSVLQVLHYPDERLRKIAAPVKEVNGEIQRIVDDMFETMYAEEGIGLAATQVDVHQQIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE++ + V INPE + E +EGCLS+P V R +KV+I+ALDRDG PF
Sbjct: 61 IDISENRDQRLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E +GLLA+CIQHE DHL GKLFVDYLS LKR RIR+KLEK + A
Sbjct: 120 ELETDGLLAICIQHEMDHLIGKLFVDYLSPLKRQRIRQKLEKMAKLNA 167
>gb|AAF23793.1|AF213822_8 (AF213822) polypeptide deformylase [Zymomonas mobilis]
Length = 177
Score = 184 bits (468), Expect = 1e-46
Identities = 100/171 (58%), Positives = 116/171 (67%), Gaps = 6/171 (3%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA+L ILE PDPRLR + VEV DD +++LIDDMFETMY+APGIGLAA QV V KR++V
Sbjct: 1 MALLPILEVPDPRLREKSTVVEVFDDNLQRLIDDMFETMYKAPGIGLAAIQVGVAKRLLV 60
Query: 61 MDLS------EDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALD 114
+DL E K P VFINPE P EE Y EGCLSVP Y V RP + K D
Sbjct: 61 IDLQQPEEGGEAKRNPMVFINPELTPEGEEKRLYNEGCLSVPDQYAEVRRPSVINAKWQD 120
Query: 115 RDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
RDGN EE EGLLA C+QHE DHL G LF+D+LS LKR + KKL K+ +
Sbjct: 121 RDGNFHEERIEGLLATCLQHEMDHLEGILFIDHLSRLKRGMLMKKLLKERK 171
>gb|AAK03643.1| (AE006193) Def [Pasteurella multocida]
Length = 170
Score = 180 bits (456), Expect = 4e-45
Identities = 94/168 (55%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MA LN+L +PD RL+ IAKPV V+D +R+++D+MFETMY GIGLAATQVN+H+RI+
Sbjct: 1 MARLNVLVYPDERLKIIAKPVVEVNDEIREIVDNMFETMYLEEGIGLAATQVNIHQRIIT 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+ K V INPE E +EGCLS+PGF V R +KV IKALDR G +
Sbjct: 61 IDVEGTKENQYVLINPEIIDSCGETG-IEEGCLSLPGFRGFVPRKEKVTIKALDRHGEEY 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
AEGLLA+CIQHE DHLNG +F DYLS LKR R+++KL K +Q A
Sbjct: 120 TLSAEGLLAICIQHEIDHLNGIVFADYLSPLKRQRMKEKLLKLQKQLA 167
>gb|AAC22282.1| (U32745) polypeptide deformylase (def) [Haemophilus influenzae Rd]
Length = 169
Score = 178 bits (451), Expect = 1e-44
Identities = 90/168 (53%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M LN+L +PD L+ + +PV V+DA+R+++DDMF+TMY+ GIGLAA QV++ +RI+
Sbjct: 1 MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIIT 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+ DK V INPE +E +EGCLS+PGF V R +KV ++ALDRDG F
Sbjct: 61 IDVEGDKQNQFVLINPEILA-SEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
A+GLLA+CIQHE DHLNG LFVDYLS LKR RI++KL K +Q A
Sbjct: 120 TLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQIA 167
>emb|CAD85881.1| (BX321862) Formylmethionine deformylase [Nitrosomonas europaea ATCC
19718]
Length = 185
Score = 177 bits (448), Expect = 3e-44
Identities = 93/167 (55%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
MAILNIL +PD RL IA V + +R L+ +M ETMY APGIGLAATQV+VH+RI+V
Sbjct: 18 MAILNILRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIV 77
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+SE + E V INPE + + QEGCLSVPG ++ V R ++V ++A DG F
Sbjct: 78 IDVSETRDELLVLINPEIIASSGNAET-QEGCLSVPGIFDKVTRAEEVTVRATGIDGKSF 136
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQ 167
E A GLLAVCIQHE DHL GK+FV+YLS K+ RI KL+KQ R+Q
Sbjct: 137 EMDASGLLAVCIQHEMDHLMGKVFVEYLSPFKQSRILSKLKKQARRQ 183
>dbj|BAB51419.1| (AP003005) N-formylmethionylaminoacyl-tRNA deformylase
[Mesorhizobium loti]
Length = 176
Score = 175 bits (443), Expect = 1e-43
Identities = 88/170 (51%), Positives = 116/170 (68%), Gaps = 2/170 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M I ++ PDP LR ++KPVE VD +R+L DDM TMY+APGIGLAA Q+ R++V
Sbjct: 1 MPIKPLIILPDPILRQVSKPVERVDAPLRKLADDMLATMYDAPGIGLAAIQIGEPLRMLV 60
Query: 61 MDLSEDKSEP--RVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118
+DL+++ P VFINPE E Y+EGCLS+P +Y V+RP VR+K LDRDG
Sbjct: 61 IDLAKEDETPAPHVFINPEILESAEARSVYEEGCLSIPDYYAEVERPASVRVKYLDRDGK 120
Query: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
E AEGL+A C+QHE DHLNG LF+D++S LKRD + KK +K + +A
Sbjct: 121 LQEMEAEGLMATCLQHEIDHLNGVLFIDHISKLKRDMVVKKFKKLAKDKA 170
>emb|CAC41856.1| (AL591783) PROBABLE POLYPEPTIDE DEFORMYLASE PROTEIN [Sinorhizobium
meliloti]
Length = 178
Score = 172 bits (437), Expect = 6e-43
Identities = 82/164 (50%), Positives = 115/164 (70%), Gaps = 2/164 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M I ++ PDP LR ++ PVE +D +R+L DDM ETMY+APGIGLAA Q+ V KR++V
Sbjct: 5 MTIKPLIILPDPVLRQVSTPVETIDADIRRLADDMLETMYDAPGIGLAAIQIGVPKRLLV 64
Query: 61 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118
+D++++ E P VFINP+ +EE Y+EGCLS+P +Y V+RP + ++ +DR+G
Sbjct: 65 LDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGCLSIPDYYAEVERPAAITVEYVDREGK 124
Query: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162
AEGLLA C+QHE DHLNG LF+DY+S LKRD + ++ K
Sbjct: 125 EQAVEAEGLLATCLQHEIDHLNGVLFIDYISKLKRDMVIRRFTK 168
>gb|AAL53505.1| (AE009665) POLYPEPTIDE DEFORMYLASE [Brucella melitensis 16M]
Length = 187
Score = 168 bits (425), Expect = 1e-41
Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++ ++ PDP LR ++KPVE DD +R+ DMF+TMY+APGIGLAA QV R++V
Sbjct: 13 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72
Query: 61 MDLSED--KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118
+DL+++ P +F+NP +++ Y+EGCLS+P +Y V+RP V++ D DG
Sbjct: 73 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132
Query: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
P A+GL+A C+QHE DHLNG LF+D++S LKRD + KK +K Q+A
Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQRA 182
>gb|AAN34202.1|AE014596_7 (AE014596) polypeptide deformylase [Brucella suis 1330]
Length = 187
Score = 168 bits (425), Expect = 1e-41
Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++ ++ PDP LR ++KPVE DD +R+ DMF+TMY+APGIGLAA QV R++V
Sbjct: 13 MSVKPLIILPDPVLRQVSKPVERFDDQLRKFASDMFDTMYDAPGIGLAAIQVGEPIRMLV 72
Query: 61 MDLSED--KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118
+DL+++ P +F+NP +++ Y+EGCLS+P +Y V+RP V++ D DG
Sbjct: 73 IDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGCLSIPDYYAEVERPATVKVNYFDADGK 132
Query: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
P A+GL+A C+QHE DHLNG LF+D++S LKRD + KK +K Q+A
Sbjct: 133 PQSMEADGLMATCLQHEIDHLNGVLFIDHISKLKRDMVIKKFKKLASQRA 182
>gb|AAK22259.1| (AE005700) polypeptide deformylase [Caulobacter crescentus CB15]
Length = 173
Score = 167 bits (422), Expect = 3e-41
Identities = 84/155 (54%), Positives = 110/155 (70%), Gaps = 4/155 (2%)
Query: 14 LRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLS---EDKSEP 70
L+ I+ PVE V D +R L+DDM ETMY+APGIGLAA QV R++VMDL+ EDK+ P
Sbjct: 18 LKKISTPVEAVTDELRALMDDMLETMYDAPGIGLAAVQVGEPVRVIVMDLAREGEDKA-P 76
Query: 71 RVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAV 130
R F+NPE +E++ Y+EGCLSVP +Y+ V+RP KV ++ ++ G E AEGL AV
Sbjct: 77 RYFVNPEILASSEDLQGYEEGCLSVPEYYDEVERPSKVTLRYMNYQGETVVEEAEGLFAV 136
Query: 131 CIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
CIQHE DHL G LF+D+LS L+RDR K++K R
Sbjct: 137 CIQHEMDHLEGVLFIDHLSRLRRDRAMAKVKKARR 171
>gb|AAL41388.1| (AE009008) polypeptide deformylase [Agrobacterium tumefaciens str.
C58 (U. Washington)]
Length = 170
Score = 164 bits (414), Expect = 3e-40
Identities = 81/167 (48%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M I ++ PDP LR +K +E VD V +L DDM ETMY+APGIGLAA Q+ V +R++V
Sbjct: 1 MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118
+D++ + E P VFINPE +++++ Y+EGCLS+P +Y V+RP + ++ + RDG
Sbjct: 61 IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120
Query: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
A+GLLA C+QHE DHLNG LF+D++S LKRD + KK K R
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAAR 167
>gb|AAK86183.1| (AE007974) AGR_C_640p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 170
Score = 164 bits (414), Expect = 3e-40
Identities = 81/167 (48%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M I ++ PDP LR +K +E VD V +L DDM ETMY+APGIGLAA Q+ V +R++V
Sbjct: 1 MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLV 60
Query: 61 MDLSEDKSE--PRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGN 118
+D++ + E P VFINPE +++++ Y+EGCLS+P +Y V+RP + ++ + RDG
Sbjct: 61 IDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGK 120
Query: 119 PFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
A+GLLA C+QHE DHLNG LF+D++S LKRD + KK K R
Sbjct: 121 QQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAAR 167
>gb|AAP96618.1| (AE017156) peptide deformylase; formylmethionine deformylase
[Haemophilus ducreyi 35000HP]
Length = 171
Score = 161 bits (408), Expect = 1e-39
Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L ++ +PD RL + +PV VDD + Q IDDMF+TMY+ GIGLAA+QV V KR++
Sbjct: 1 MSVLQVVLYPDDRLTKVCEPVTQVDDELNQFIDDMFDTMYQEGGIGLAASQVGVLKRVIT 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+ DK+ V INPE E +EGCLS+PG+ V R +K+ +KAL+R G
Sbjct: 61 IDIEGDKTNQVVLINPEILESCGETG-IEEGCLSIPGYRALVPRKEKITVKALNRQGEEV 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
A+ L A+CIQHE DHLNG +FVD++S LKR RI+ K++K +Q
Sbjct: 120 IYHADDLFAICIQHEIDHLNGIVFVDHISNLKRQRIKDKMQKLKKQ 165
>emb|CAD83734.1| (BX248584) polypeptide deformylase [Candidatus Blochmannia
floridanus]
Length = 175
Score = 158 bits (399), Expect = 1e-38
Identities = 80/162 (49%), Positives = 109/162 (67%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M+IL +L +PD RLR IA+ V ++ +++I DMFETMY GIGLAATQV++H++I+V
Sbjct: 1 MSILQMLYYPDQRLRKIARSVSIISHDTKKIISDMFETMYFQQGIGLAATQVDIHQKIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+DL+ + + VFINP + EGCLS+P +V R Q + +++LD +GN F
Sbjct: 61 IDLNNNIQKRLVFINPCIIKKIGTITHIIEGCLSIPKIRASVPRSQNIIVQSLDENGNNF 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEK 162
E A LL+VCIQHE DHL GKLF+DYLS K RI KK+ K
Sbjct: 121 EMEATDLLSVCIQHEIDHLLGKLFIDYLSPFKIQRIHKKINK 162
>dbj|BAB13189.1| (AP001119) polypeptide deformylase [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 173
Score = 155 bits (392), Expect = 9e-38
Identities = 75/167 (44%), Positives = 118/167 (70%), Gaps = 3/167 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L IL +PD RLR +AKPV+ ++ ++++ +DM +TMY+ GIGLAATQVN+ +I+V
Sbjct: 1 MSLLKILYYPDIRLRILAKPVKEINKKIQKIANDMIDTMYQEEGIGLAATQVNIPLQIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMD-QYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 119
++ E K V INP+ + +E D +EGCLS+P + ++ R ++++A++ DG
Sbjct: 61 VNTMEQKKNNLVLINPKI--IKKEGDISIEEGCLSIPEYQASIPRSNYIQVQAVNLDGEK 118
Query: 120 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQ 166
E A+ +L++CIQHE DHL GKLF+DYLS KR+RI+KK EK +++
Sbjct: 119 IEIEAKSILSICIQHEIDHLKGKLFIDYLSKFKRERIQKKFEKINKK 165
>gb|AAO07786.1|AE016811_27 (AE016811) N-formylmethionyl-tRNA deformylase [Vibrio vulnificus
CMCP6]
Length = 168
Score = 150 bits (379), Expect = 3e-36
Identities = 83/169 (49%), Positives = 113/169 (66%), Gaps = 3/169 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAP-GIGLAATQVNVHKRIV 59
MA+L IL PDPRLR +K V V AV+ LIDD+ ET+YE G+GLAA QV + IV
Sbjct: 1 MAVLEILTAPDPRLRVQSKEVTDVA-AVQTLIDDLLETLYETDNGVGLAAPQVGREEAIV 59
Query: 60 VMDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 119
V+DLSE++ EP V +NP+ + + + QEGCLSVP +Y +V+R V ++ALDRDG P
Sbjct: 60 VIDLSENRDEPLVLVNPKVVSGSNK-EMGQEGCLSVPDYYADVERYTSVVVEALDRDGKP 118
Query: 120 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
LA+ +QHE DHL+G LF+DYLS LK+ KK++K ++ +A
Sbjct: 119 LRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVKKHNKLRA 167
>dbj|BAC24642.1| (AB063522) def [Wigglesworthia brevipalpis] [Wigglesworthia
glossinidia endosymbiont of Glossina brevipalpis]
Length = 152
Score = 148 bits (374), Expect = 1e-35
Identities = 75/152 (49%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
M++L+IL +P+ +LR IA + ++D ++ LI +M ETMY GIGLAATQV+VHKRI+V
Sbjct: 1 MSVLSILNYPNKKLRKIASNISLIDSEIKSLIKNMLETMYFNEGIGLAATQVDVHKRIIV 60
Query: 61 MDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
+D+S++K++P + INP F ++EGCLS+P V+R +KV+IKA++ G F
Sbjct: 61 IDISKNKNKPLILINPVFINKC-GAQTFEEGCLSIPKKTAFVNRSKKVKIKAINCLGEEF 119
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
++GLLA CIQHE DHL GKLF+DY+ LK
Sbjct: 120 LLKSKGLLATCIQHEMDHLIGKLFIDYIKPLK 151
>dbj|BAC62127.1| (AP005086) polypeptide deformylase [Vibrio parahaemolyticus]
Length = 168
Score = 148 bits (373), Expect = 1e-35
Identities = 80/169 (47%), Positives = 112/169 (66%), Gaps = 3/169 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAP-GIGLAATQVNVHKRIV 59
MA+L IL PDPRL+ A+ V V ++ LIDDM ET+Y GIGLA+TQV + +V
Sbjct: 1 MAVLEILSIPDPRLKVKAEKVTDVS-TIQTLIDDMLETLYATGNGIGLASTQVGRKEAVV 59
Query: 60 VMDLSEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNP 119
V+D+S+++++P + +NPE E QEGCLSVP +Y +V+R V + ALDRDGNP
Sbjct: 60 VIDISDERNDPLILVNPEVVS-GENKALGQEGCLSVPEYYADVERYTSVVVSALDRDGNP 118
Query: 120 FEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA 168
++ LA+ +QHE DHL+G LF+DYLS LK+ KK++K + QA
Sbjct: 119 ITIESDEFLAIVMQHEIDHLSGNLFIDYLSPLKQKMAMKKVKKYVKAQA 167
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.320 0.140 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,417,500
Number of Sequences: 559965
Number of extensions: 2162153
Number of successful extensions: 5805
Number of sequences better than 1.0e-02: 100
Number of HSP's better than 0.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 5422
Number of HSP's gapped (non-prelim): 202
length of query: 168
length of database: 168,382,221
effective HSP length: 108
effective length of query: 60
effective length of database: 107,906,001
effective search space: 6474360060
effective search space used: 6474360060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 90 (39.3 bits)