Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03403.1|AE004441_4 (AE004441) conserved hypothetical ... 429 e-120
gb|AAN82700.1|AE016768_118 (AE016768) Hypothetical protein ... 269 1e-71
gb|AAO09438.1|AE016800_43 (AE016800) Conserved hypothetical... 268 2e-71
dbj|BAC61267.1| (AP005083) conserved hypothetical protein [... 267 3e-71
gb|AAL22439.1| (AE008865) putative integral membrane protei... 267 4e-71
gb|AAO71414.1| (AE016847) putative membrane protein [Salmon... 267 4e-71
emb|CAD08051.1| (AL627281) putative membrane protein [Salmo... 267 4e-71
gb|AAP19234.1| (AE016992) hypothetical protein [Shigella fl... 266 8e-71
gb|AAN44948.1|AE015357_2 (AE015357) orf, conserved hypothet... 266 8e-71
gb|AAG58580.1|AE005570_7 (AE005570) orf, hypothetical prote... 266 8e-71
dbj|BAB37743.1| (AP002565) hypothetical protein [Escherichi... 266 8e-71
gb|AAF95846.1| (AE004336) conserved hypothetical protein [V... 265 1e-70
gb|AAB18446.1| (U00039) unnamed protein product [Escherichi... 263 4e-70
gb|AAC76496.1| (AE000423) orf, hypothetical protein [Escher... 263 4e-70
gb|AAM83997.1|AE013641_6 (AE013641) hypothetical protein [Y... 257 4e-68
emb|CAC93290.1| (AJ414159) putative membrane protein [Yersi... 257 4e-68
gb|AAN57674.1|AE015903_6 (AE015903) conserved hypothetical ... 251 2e-66
gb|AAF40761.1| (AE002388) conserved hypothetical protein [N... 239 6e-63
emb|CAB85383.1| (AL162758) conserved hypothetical inner mem... 236 5e-62
gb|AAP95235.1| (AE017151) conserved hypothetical protein [H... 231 2e-60
gb|AAK03973.1| (AE006226) unknown [Pasteurella multocida] 227 3e-59
gb|AAC22521.1| (U32768) conserved hypothetical protein [Hae... 225 2e-58
gb|AAL44430.1| (AE009291) conserved hypothetical protein [A... 120 4e-27
gb|AAK89778.1| (AE008321) AGR_L_2416p [Agrobacterium tumefa... 120 4e-27
emb|CAC47248.1| (AL591791) HYPOTHETICAL TRANSMEMBRANE PROTE... 108 3e-23
emb|CAE33402.1| (BX640445) putative membrane protein [Borde... 107 4e-23
emb|CAE38234.1| (BX640432) putative membrane protein [Borde... 106 1e-22
dbj|BAB50420.1| (AP003002) hypothetical protein [Mesorhizob... 105 2e-22
emb|CAE41575.1| (BX640414) putative membrane protein [Borde... 104 3e-22
gb|AAL51239.1| (AE009449) Hypothetical Membrane Spanning Pr... 92 2e-18
gb|AAN30904.1|AE014490_1 (AE014490) membrane protein, putat... 92 2e-18
gb|AAM42871.1| (AE012481) conserved hypothetical protein [X... 91 4e-18
gb|AAM35440.1| (AE011682) conserved hypothetical protein [X... 91 5e-18
gb|AAA96619.1| (L77246) putative [Bacillus subtilis] 70 1e-11
emb|CAB14116.1| (Z99115) ypdP [Bacillus subtilis subsp. sub... 70 1e-11
gb|AAP78434.1| (AE017149) hypothetical protein [Helicobacte... 63 1e-09
gb|AAN49406.1|AE011391_11 (AE011391) conserved hypothetical... 63 1e-09
gb|AAM04076.1| (AE010725) conserved hypothetical protein [M... 60 7e-09
dbj|BAB42525.1| (AP003133) conserved hypothetical protein [... 59 2e-08
dbj|BAB95186.1| (AP004826) conserved hypothetical protein [... 59 2e-08
dbj|BAB57594.1| (AP003362) conserved hypothetical protein [... 59 2e-08
gb|AAO04723.1|AE016747_220 (AE016747) conserved hypothetica... 58 5e-08
gb|AAB89147.1| (AE000958) conserved hypothetical protein [A... 55 2e-07
gb|AAM40644.1| (AE012234) conserved hypothetical protein [X... 55 2e-07
gb|AAM31496.1| (AE013416) Transporter [Methanosarcina mazei... 55 4e-07
gb|AAC66433.1| (AE001118) conserved hypothetical integral m... 54 7e-07
gb|AAM36265.1| (AE011771) conserved hypothetical protein [X... 54 7e-07
gb|AAD35874.1|AE001747_17 (AE001747) conserved hypothetical... 54 7e-07
gb|AAL94086.1| (AE010502) Transporter [Fusobacterium nuclea... 50 7e-06
dbj|BAB97626.1| (AP005274) Uncharacterized ACR [Corynebacte... 50 7e-06
gb|AAG20382.1| (AE005111) Vng2264c [Halobacterium sp. NRC-1] 50 9e-06
dbj|BAC14165.1| (AP004600) hypothetical conserved protein [... 49 2e-05
gb|AAO76674.1| (AE016932) conserved hypothetical protein [B... 47 6e-05
dbj|BAC17012.1| (AP005214) conserved hypothetical protein [... 47 8e-05
dbj|BAA81121.1| (AP000063) 247aa long hypothetical protein ... 47 1e-04
gb|AAP99014.1| (AE017160) hypothetical protein [Chlamydophi... 46 1e-04
gb|AAD19182.1| (AE001685) conserved hypothetical bacterial ... 46 1e-04
gb|AAF38604.1| (AE002240) conserved hypothetical protein [C... 46 1e-04
dbj|BAA99252.1| (AP002548) conserved hypothetical bacterial... 46 1e-04
gb|AAO91293.1| (AE016965) membrane protein, putative [Coxie... 45 4e-04
gb|AAF09961.1|AE001898_3 (AE001898) conserved hypothetical ... 43 0.001
>gb|AAG03403.1|AE004441_4 (AE004441) conserved hypothetical protein [Pseudomonas aeruginosa
PAO1]
Length = 217
Score = 429 bits (1104), Expect = e-120
Identities = 216/217 (99%), Positives = 216/217 (99%)
Query: 1 MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
MSASSPAAWRGTLAGLIAFHI IIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV
Sbjct: 1 MSASSPAAWRGTLAGLIAFHIFIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
Query: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV 120
RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV
Sbjct: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV 120
Query: 121 LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT 180
LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT
Sbjct: 121 LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT 180
Query: 181 VDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA 217
VDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA
Sbjct: 181 VDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQSNA 217
>gb|AAN82700.1|AE016768_118 (AE016768) Hypothetical protein yhhQ [Escherichia coli CFT073]
Length = 221
Score = 269 bits (687), Expect = 1e-71
Identities = 126/202 (62%), Positives = 161/202 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++I +SNYLVQLP+++FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYV+S LF +++GF AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
SRHWW AP AST+ GN+ DT FFF+AFWRS + FMA+HW+EIA VDY K+ IS++ F+
Sbjct: 136 SRHWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQSNA 217
P+YG+LLN +LK L + + NA
Sbjct: 196 PMYGVLLNMLLKRLADKSEINA 217
>gb|AAO09438.1|AE016800_43 (AE016800) Conserved hypothetical protein [Vibrio vulnificus CMCP6]
Length = 223
Score = 268 bits (685), Expect = 2e-71
Identities = 132/209 (63%), Positives = 162/209 (77%)
Query: 1 MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
MS +PA R L L FH+VII +SNYLVQLP T+FG+HTTWGAF+FPFIFLATDLTV
Sbjct: 1 MSNFTPAQQRNALIYLALFHLVIIASSNYLVQLPFTIFGFHTTWGAFTFPFIFLATDLTV 60
Query: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV 120
R+ G AR +I VM+PALI SY +SVLF E F+GF+ L EFN FVARI++ASF+AY+
Sbjct: 61 RIFGAKLARKIIFLVMMPALIVSYALSVLFFEGQFQGFAHLGEFNLFVARIAIASFMAYL 120
Query: 121 LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT 180
LGQILD+ VF+RLR+ + WW AP ST+ GN LDT FF +AF++S + FMA+HW EIA
Sbjct: 121 LGQILDVHVFNRLRQMKQWWVAPTCSTLFGNALDTLAFFAIAFYQSPDAFMAEHWTEIAL 180
Query: 181 VDYGVKLSISLLLFVPLYGMLLNGILKML 209
VDYG KL ISL LFVP+YG+LLN ++K L
Sbjct: 181 VDYGFKLVISLGLFVPMYGVLLNYLIKKL 209
>dbj|BAC61267.1| (AP005083) conserved hypothetical protein [Vibrio parahaemolyticus]
Length = 222
Score = 267 bits (683), Expect = 3e-71
Identities = 130/209 (62%), Positives = 161/209 (77%)
Query: 1 MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
MS +PA R L L+ FH+VII +SNYLVQLP T+FG HTTWGAF+FPFIFLATDLTV
Sbjct: 1 MSNFTPAQQRNALIYLVLFHLVIIASSNYLVQLPFTIFGLHTTWGAFTFPFIFLATDLTV 60
Query: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV 120
R+ G AR +I VM+PAL SY +SV+F E F+GF L EFN FVARI++ASF+AY+
Sbjct: 61 RIFGAQLARKIIFLVMLPALAVSYFLSVVFFEGQFQGFGHLGEFNLFVARIAIASFMAYL 120
Query: 121 LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT 180
LGQI+D+ VF+RLR+ + WW AP ST+ GN LDT FF +AF++S +PFMA+HW EIA
Sbjct: 121 LGQIMDVHVFNRLRQMKQWWVAPTCSTLFGNALDTIAFFAIAFYQSPDPFMAEHWTEIAL 180
Query: 181 VDYGVKLSISLLLFVPLYGMLLNGILKML 209
VDYG KL ISL LFVP+YG+LLN ++K L
Sbjct: 181 VDYGFKLVISLGLFVPMYGVLLNYLIKKL 209
>gb|AAL22439.1| (AE008865) putative integral membrane protein [Salmonella
typhimurium LT2]
Length = 221
Score = 267 bits (682), Expect = 4e-71
Identities = 127/199 (63%), Positives = 159/199 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++II+SNYLVQLPIT+FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVIISSNYLVQLPITIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYVVS LF A++GF+AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLVSYVVSSLFYMGAWQGFAALANFNLFVARIAAASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
+R WW AP AST+ GN+ DT FFF+AFWRS + FMA HW+EIA VDY K+ IS++ F+
Sbjct: 136 NRRWWLAPTASTLFGNISDTLAFFFIAFWRSPDAFMAGHWMEIALVDYCFKVLISIIFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQ 214
P+YG+LLN +LK L + +
Sbjct: 196 PMYGVLLNMLLKKLADKSE 214
>gb|AAO71414.1| (AE016847) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
Length = 221
Score = 267 bits (682), Expect = 4e-71
Identities = 127/199 (63%), Positives = 159/199 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++II+SNYLVQLPIT+FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVIISSNYLVQLPITIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYVVS LF A++GF+AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLVSYVVSSLFYMGAWQGFAALANFNLFVARIAAASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
+R WW AP AST+ GN+ DT FFF+AFWRS + FMA HW+EIA VDY K+ IS++ F+
Sbjct: 136 NRRWWLAPTASTLFGNISDTLAFFFIAFWRSPDAFMAGHWMEIALVDYCFKVLISIIFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQ 214
P+YG+LLN +LK L + +
Sbjct: 196 PMYGVLLNMLLKKLADKSE 214
>emb|CAD08051.1| (AL627281) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 221
Score = 267 bits (682), Expect = 4e-71
Identities = 127/199 (63%), Positives = 159/199 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++II+SNYLVQLPIT+FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVIISSNYLVQLPITIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYVVS LF A++GF+AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLVSYVVSSLFYMGAWQGFAALANFNLFVARIAAASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
+R WW AP AST+ GN+ DT FFF+AFWRS + FMA HW+EIA VDY K+ IS++ F+
Sbjct: 136 NRRWWLAPTASTLFGNISDTLAFFFIAFWRSPDAFMAGHWMEIALVDYCFKVLISIIFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQ 214
P+YG+LLN +LK L + +
Sbjct: 196 PMYGVLLNMLLKKLADKSE 214
>gb|AAP19234.1| (AE016992) hypothetical protein [Shigella flexneri 2a str. 2457T]
Length = 221
Score = 266 bits (679), Expect = 8e-71
Identities = 125/202 (61%), Positives = 160/202 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++I +SNYLVQLP+++FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYV+S LF +++GF AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
SR WW AP AST+ GN+ DT FFF+AFWRS + FMA+HW+EIA VDY K+ IS++ F+
Sbjct: 136 SRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQSNA 217
P+YG+LLN +LK L + + NA
Sbjct: 196 PMYGVLLNMLLKRLADKSEINA 217
>gb|AAN44948.1|AE015357_2 (AE015357) orf, conserved hypothetical protein [Shigella flexneri
2a str. 301]
Length = 221
Score = 266 bits (679), Expect = 8e-71
Identities = 125/202 (61%), Positives = 160/202 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++I +SNYLVQLP+++FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYV+S LF +++GF AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
SR WW AP AST+ GN+ DT FFF+AFWRS + FMA+HW+EIA VDY K+ IS++ F+
Sbjct: 136 SRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQSNA 217
P+YG+LLN +LK L + + NA
Sbjct: 196 PMYGVLLNMLLKRLADKSEINA 217
>gb|AAG58580.1|AE005570_7 (AE005570) orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 221
Score = 266 bits (679), Expect = 8e-71
Identities = 125/202 (61%), Positives = 160/202 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++I +SNYLVQLP+++FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYV+S LF +++GF AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
SR WW AP AST+ GN+ DT FFF+AFWRS + FMA+HW+EIA VDY K+ IS++ F+
Sbjct: 136 SRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQSNA 217
P+YG+LLN +LK L + + NA
Sbjct: 196 PMYGVLLNMLLKRLADKSEINA 217
>dbj|BAB37743.1| (AP002565) hypothetical protein [Escherichia coli O157:H7]
Length = 221
Score = 266 bits (679), Expect = 8e-71
Identities = 125/202 (61%), Positives = 160/202 (79%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++I +SNYLVQLP+++FG+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVITSSNYLVQLPVSIFGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYV+S LF +++GF AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
SR WW AP AST+ GN+ DT FFF+AFWRS + FMA+HW+EIA VDY K+ IS++ F+
Sbjct: 136 SRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQSNA 217
P+YG+LLN +LK L + + NA
Sbjct: 196 PMYGVLLNMLLKRLADKSEINA 217
>gb|AAF95846.1| (AE004336) conserved hypothetical protein [Vibrio cholerae]
Length = 223
Score = 265 bits (678), Expect = 1e-70
Identities = 126/209 (60%), Positives = 163/209 (77%)
Query: 1 MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
M+ +PA R L L+ FH+VII +SNYLVQ+P T+FG+HTTWGAF+FPFIFLATDLTV
Sbjct: 1 MNHFTPAQQRKALGYLVLFHLVIIASSNYLVQIPFTIFGFHTTWGAFTFPFIFLATDLTV 60
Query: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV 120
R+ G G AR +I VM+PAL SY++SV+F E ++G + L EFN FVARI++ASF+AY+
Sbjct: 61 RIFGAGLARKIIFLVMLPALAVSYLLSVVFFEGQYQGLAPLSEFNLFVARIAIASFMAYL 120
Query: 121 LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT 180
LGQI+D+ VF+RLR+ + WW AP ST+ GN LDT FF +AF++S +PFMA+HW EIA
Sbjct: 121 LGQIMDVHVFNRLRQMKQWWVAPTCSTLFGNALDTIAFFSIAFYQSSDPFMAEHWTEIAL 180
Query: 181 VDYGVKLSISLLLFVPLYGMLLNGILKML 209
VDY KL ISL LFVP+YG+LLN ++K L
Sbjct: 181 VDYTFKLIISLGLFVPMYGVLLNYLIKKL 209
>gb|AAB18446.1| (U00039) unnamed protein product [Escherichia coli]
Length = 221
Score = 263 bits (673), Expect = 4e-70
Identities = 124/202 (61%), Positives = 159/202 (78%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++I +SNYLVQLP+++ G+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVITSSNYLVQLPVSILGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYV+S LF +++GF AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
SR WW AP AST+ GN+ DT FFF+AFWRS + FMA+HW+EIA VDY K+ IS++ F+
Sbjct: 136 SRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQSNA 217
P+YG+LLN +LK L + + NA
Sbjct: 196 PMYGVLLNMLLKRLADKSEINA 217
>gb|AAC76496.1| (AE000423) orf, hypothetical protein [Escherichia coli K12]
Length = 221
Score = 263 bits (673), Expect = 4e-70
Identities = 124/202 (61%), Positives = 159/202 (78%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L FH+++I +SNYLVQLP+++ G+HTTWGAFSFPFIFLATDLTVR+ G AR +I V
Sbjct: 16 LSLFHLLVITSSNYLVQLPVSILGFHTTWGAFSFPFIFLATDLTVRIFGAPLARRIIFAV 75
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
MIPAL+ SYV+S LF +++GF AL FN FVARI+ ASF+AY LGQILD+ VF+RLR+
Sbjct: 76 MIPALLISYVISSLFYMGSWQGFGALAHFNLFVARIATASFMAYALGQILDVHVFNRLRQ 135
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFV 195
SR WW AP AST+ GN+ DT FFF+AFWRS + FMA+HW+EIA VDY K+ IS++ F+
Sbjct: 136 SRRWWLAPTASTLFGNVSDTLAFFFIAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFL 195
Query: 196 PLYGMLLNGILKMLPGRPQSNA 217
P+YG+LLN +LK L + + NA
Sbjct: 196 PMYGVLLNMLLKRLADKSEINA 217
>gb|AAM83997.1|AE013641_6 (AE013641) hypothetical protein [Yersinia pestis KIM]
Length = 247
Score = 257 bits (656), Expect = 4e-68
Identities = 122/195 (62%), Positives = 152/195 (77%)
Query: 13 LAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVI 72
L L FHIVII +SNYLVQLPI +FG+HTTWGAF+FPFIFLATDLTVR+ G AR +I
Sbjct: 38 LVWLSLFHIVIITSSNYLVQLPIAIFGFHTTWGAFTFPFIFLATDLTVRIFGAPLARRII 97
Query: 73 ARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDR 132
VM+PAL+ SY++S LF + +++GF AL FN VARI++ASF+AYVLGQILD+QVF+R
Sbjct: 98 LSVMVPALLISYLISALFYQGSWQGFPALTSFNLVVARIAVASFMAYVLGQILDVQVFNR 157
Query: 133 LRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLL 192
LR+ WW AP A+ GN+ DT FFF+AF+RS +PFMA HWVEIA VDY KL I +L
Sbjct: 158 LRQRNAWWVAPTAAMFFGNISDTMAFFFIAFYRSSDPFMAAHWVEIALVDYSFKLLICML 217
Query: 193 LFVPLYGMLLNGILK 207
F+P YG++LN +LK
Sbjct: 218 FFLPAYGVMLNVLLK 232
>emb|CAC93290.1| (AJ414159) putative membrane protein [Yersinia pestis CO92]
Length = 222
Score = 257 bits (656), Expect = 4e-68
Identities = 122/195 (62%), Positives = 152/195 (77%)
Query: 13 LAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVI 72
L L FHIVII +SNYLVQLPI +FG+HTTWGAF+FPFIFLATDLTVR+ G AR +I
Sbjct: 13 LVWLSLFHIVIITSSNYLVQLPIAIFGFHTTWGAFTFPFIFLATDLTVRIFGAPLARRII 72
Query: 73 ARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDR 132
VM+PAL+ SY++S LF + +++GF AL FN VARI++ASF+AYVLGQILD+QVF+R
Sbjct: 73 LSVMVPALLISYLISALFYQGSWQGFPALTSFNLVVARIAVASFMAYVLGQILDVQVFNR 132
Query: 133 LRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLL 192
LR+ WW AP A+ GN+ DT FFF+AF+RS +PFMA HWVEIA VDY KL I +L
Sbjct: 133 LRQRNAWWVAPTAAMFFGNISDTMAFFFIAFYRSSDPFMAAHWVEIALVDYSFKLLICML 192
Query: 193 LFVPLYGMLLNGILK 207
F+P YG++LN +LK
Sbjct: 193 FFLPAYGVMLNVLLK 207
>gb|AAN57674.1|AE015903_6 (AE015903) conserved hypothetical protein [Shewanella oneidensis
MR-1]
Length = 219
Score = 251 bits (642), Expect = 2e-66
Identities = 123/213 (57%), Positives = 160/213 (75%), Gaps = 1/213 (0%)
Query: 5 SPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLG 64
+PA R L L+ FHI+II SNYLVQLP LFG+HTTWGAFSFPF++LATDLTVR+ G
Sbjct: 5 TPAQLRRALLLLVGFHILIICVSNYLVQLPFQLFGYHTTWGAFSFPFVYLATDLTVRIFG 64
Query: 65 KGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQI 124
+ PAR +I + M+PAL+ SYV+ V+F + +F+G +L ++NTFV RI+ ASF AY++GQ+
Sbjct: 65 QTPARSIILKAMVPALMISYVMGVVFHQGSFQGIDSLSQWNTFVFRIAFASFAAYLIGQL 124
Query: 125 LDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYG 184
+DI VF RLR+SR WW AP ASTI+GNL+DT FF VAF+ S + FMA +W EIA VDY
Sbjct: 125 MDITVFARLRQSRSWWVAPAASTIVGNLVDTLVFFSVAFYASTDSFMATNWPEIAAVDYS 184
Query: 185 VKLSISLLLFVPLYGMLLNGIL-KMLPGRPQSN 216
KL +SL LF+P YG+LL + K+L PQ +
Sbjct: 185 FKLLVSLGLFLPAYGVLLKVLQDKILQTSPQKS 217
>gb|AAF40761.1| (AE002388) conserved hypothetical protein [Neisseria meningitidis
MC58]
Length = 228
Score = 239 bits (611), Expect = 6e-63
Identities = 123/209 (58%), Positives = 149/209 (71%)
Query: 1 MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
M A + A + L L+ FHI+II ASNYLVQ P +FG HTTWGAFSFPFIFLATDLTV
Sbjct: 1 MYAFTAAQQQKALFRLVLFHILIIAASNYLVQFPFQIFGIHTTWGAFSFPFIFLATDLTV 60
Query: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV 120
R+ G AR +I VM PAL+ SYV SVLF ++ G AL EFNTFV RI+LASF AY
Sbjct: 61 RIFGSHLARRIIFWVMFPALLLSYVFSVLFHNGSWTGLGALSEFNTFVGRIALASFAAYA 120
Query: 121 LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT 180
+GQILDI VF++LRR + WW AP AST++GN LDT FF VAF+ S + FMA +W IA
Sbjct: 121 IGQILDIFVFNKLRRLKAWWIAPTASTVIGNALDTLVFFAVAFYASSDGFMAANWQGIAF 180
Query: 181 VDYGVKLSISLLLFVPLYGMLLNGILKML 209
VDY KL++ L F+P YG++LN + K L
Sbjct: 181 VDYLFKLTVCTLFFLPAYGVILNLLTKKL 209
>emb|CAB85383.1| (AL162758) conserved hypothetical inner membrane protein [Neisseria
meningitidis Z2491]
Length = 228
Score = 236 bits (603), Expect = 5e-62
Identities = 123/209 (58%), Positives = 148/209 (70%)
Query: 1 MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
M A + A + L L+ FHI+II ASNYLVQ P + G HTTWGAFSFPFIFLATDLTV
Sbjct: 1 MYAFTAAQQQKALFWLVLFHILIIAASNYLVQFPFQISGIHTTWGAFSFPFIFLATDLTV 60
Query: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYV 120
R+ G AR +I VM PAL+ SYV SVLF ++ G AL EFNTFV RI+LASF AY
Sbjct: 61 RIFGSHLARRIIFWVMFPALLLSYVFSVLFHNGSWTGLGALSEFNTFVGRIALASFAAYA 120
Query: 121 LGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIAT 180
LGQILDI VF++LRR + WW AP AST++GN LDT FF VAF+ S + FMA +W IA
Sbjct: 121 LGQILDIFVFNKLRRLKAWWVAPTASTVIGNALDTLVFFAVAFYASSDGFMAANWQGIAF 180
Query: 181 VDYGVKLSISLLLFVPLYGMLLNGILKML 209
VDY KL++ L F+P YG++LN + K L
Sbjct: 181 VDYLFKLTVCGLFFLPAYGVILNLLTKKL 209
>gb|AAP95235.1| (AE017151) conserved hypothetical protein [Haemophilus ducreyi
35000HP]
Length = 221
Score = 231 bits (590), Expect = 2e-60
Identities = 121/211 (57%), Positives = 151/211 (71%), Gaps = 6/211 (2%)
Query: 5 SPAAWRGTLAGLIAFHIVIIIASNYLVQL------PITLFGWHTTWGAFSFPFIFLATDL 58
S A R +L L +FHI II SNYLVQ+ P T TTWG F+FPFIFLATDL
Sbjct: 8 SDAQKRRSLILLSSFHIFIISLSNYLVQITFEIKFPFTESVIPTTWGTFTFPFIFLATDL 67
Query: 59 TVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLA 118
TVR+ G AR +I M+PAL+ SY++SVLF E F+GF+A+ FN FV RI+LASF A
Sbjct: 68 TVRVFGANLARKIIFIGMLPALLISYLISVLFFETQFQGFAAIANFNLFVFRIALASFSA 127
Query: 119 YVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEI 178
YV+GQ+LDI VF+RLR+ WW AP+ STI G L+DT TFF VAF++S + +MA+HW I
Sbjct: 128 YVIGQLLDILVFNRLRQGNRWWLAPMCSTIFGTLIDTITFFAVAFYQSSDRYMAEHWFTI 187
Query: 179 ATVDYGVKLSISLLLFVPLYGMLLNGILKML 209
AT+DY KL +SLLLF+PLYG+LLN +L L
Sbjct: 188 ATIDYAFKLFVSLLLFLPLYGVLLNVLLNKL 218
>gb|AAK03973.1| (AE006226) unknown [Pasteurella multocida]
Length = 235
Score = 227 bits (579), Expect = 3e-59
Identities = 115/212 (54%), Positives = 150/212 (70%), Gaps = 12/212 (5%)
Query: 10 RGTLAGLIAFHIVIIIASNYLVQLP--ITL----------FGWHTTWGAFSFPFIFLATD 57
R L L FHI+II ASNYLVQ+P ITL F +H+TWG +FPFIFLATD
Sbjct: 14 RRALILLSFFHILIIAASNYLVQIPFEITLPLSQLGTREDFSFHSTWGTLTFPFIFLATD 73
Query: 58 LTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFL 117
LTVR+ G AR +I VMIPAL+ SYV+S LFQ+ ++G +AL FNTFV RI++ASF
Sbjct: 74 LTVRIFGAKEARWIIFVVMIPALVISYVISTLFQDTQYQGLNALAHFNTFVFRIAVASFF 133
Query: 118 AYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVE 177
AYV GQ+LD+ VF+RLR+ + WW AP +S I G++ DTF FF +AF+ S +PFMA+HW
Sbjct: 134 AYVFGQLLDVLVFNRLRQLKTWWIAPSSSMIFGSMADTFLFFAIAFYASSDPFMAEHWAA 193
Query: 178 IATVDYGVKLSISLLLFVPLYGMLLNGILKML 209
+ VDY KL + ++LFVP YG++LN IL+ +
Sbjct: 194 LGFVDYLFKLFVGIILFVPAYGVVLNFILRKI 225
>gb|AAC22521.1| (U32768) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 235
Score = 225 bits (573), Expect = 2e-58
Identities = 114/212 (53%), Positives = 149/212 (70%), Gaps = 12/212 (5%)
Query: 10 RGTLAGLIAFHIVIIIASNYLVQLP--ITL----------FGWHTTWGAFSFPFIFLATD 57
R + L FHI II ASNY VQ+P ITL F +H+TWG +FPFIFLATD
Sbjct: 14 RRAIIWLSFFHIFIIAASNYFVQIPFEITLKLTALGAANDFSFHSTWGTLTFPFIFLATD 73
Query: 58 LTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFL 117
LTVR+ G AR +I VM PALI SYV+SVLF E+ F+GF +L F+ FV RI++ASF
Sbjct: 74 LTVRIFGAEDARKIIFVVMFPALIVSYVISVLFSESKFQGFESLTHFDLFVFRIAIASFA 133
Query: 118 AYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVE 177
AYV+GQ+LD+ VF+RLR+ + WW AP +S G++ DTF FF +AF++S +PFMA+HW +
Sbjct: 134 AYVVGQLLDVIVFNRLRQLKTWWVAPTSSMTFGSMADTFVFFSIAFYQSADPFMAEHWAQ 193
Query: 178 IATVDYGVKLSISLLLFVPLYGMLLNGILKML 209
+ VDY KL I ++LFVP YG++LN IL+ L
Sbjct: 194 LGFVDYLFKLFIGIILFVPAYGVVLNVILRKL 225
>gb|AAL44430.1| (AE009291) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 212
Score = 120 bits (302), Expect = 4e-27
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 48/215 (22%)
Query: 22 VIIIASNYLVQLPIT--LFGWHT----TWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
++++ASN LVQ P++ LFG + TWGAF++P FL TDLT R G AR V+
Sbjct: 16 LVVVASNILVQYPLSGSLFGINLGDLLTWGAFTYPVAFLVTDLTNRQFGPSVARRVV--- 72
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
+A ++V V L F T + RI++AS AY++GQ+LDI VF+RLRR
Sbjct: 73 -----LAGFIVGVT------------LSFWTSIPRIAVASGTAYLIGQLLDISVFNRLRR 115
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRS-------------DNPFM------AQHWV 176
R WW AP+A ++LG++LDT FF +AF S P + A W+
Sbjct: 116 QR-WWHAPLAGSMLGSVLDTALFFSIAFAASFSFVGPNDAFAIESAPLLGVFALEAPRWI 174
Query: 177 EIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPG 211
A D VK+ + L++ +P YG L+N LK +PG
Sbjct: 175 SWALGDLSVKVLVGLVMLLP-YGALMN-TLKPMPG 207
>gb|AAK89778.1| (AE008321) AGR_L_2416p [Agrobacterium tumefaciens str. C58
(Cereon)]
Length = 245
Score = 120 bits (302), Expect = 4e-27
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 48/215 (22%)
Query: 22 VIIIASNYLVQLPIT--LFGWHT----TWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
++++ASN LVQ P++ LFG + TWGAF++P FL TDLT R G AR V+
Sbjct: 49 LVVVASNILVQYPLSGSLFGINLGDLLTWGAFTYPVAFLVTDLTNRQFGPSVARRVV--- 105
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR 135
+A ++V V L F T + RI++AS AY++GQ+LDI VF+RLRR
Sbjct: 106 -----LAGFIVGVT------------LSFWTSIPRIAVASGTAYLIGQLLDISVFNRLRR 148
Query: 136 SRHWWTAPVASTILGNLLDTFTFFFVAFWRS-------------DNPFM------AQHWV 176
R WW AP+A ++LG++LDT FF +AF S P + A W+
Sbjct: 149 QR-WWHAPLAGSMLGSVLDTALFFSIAFAASFSFVGPNDAFAIESAPLLGVFALEAPRWI 207
Query: 177 EIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPG 211
A D VK+ + L++ +P YG L+N LK +PG
Sbjct: 208 SWALGDLSVKVLVGLVMLLP-YGALMN-TLKPMPG 240
>emb|CAC47248.1| (AL591791) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
Length = 212
Score = 108 bits (269), Expect = 3e-23
Identities = 77/219 (35%), Positives = 113/219 (51%), Gaps = 48/219 (21%)
Query: 17 IAFHIVIIIASNYLVQLPIT------LFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARL 70
+A +++ASN+LVQ P+ G TWGAFS+PF FL TDLT R G AR
Sbjct: 11 VALMTFVVVASNFLVQYPLPGSIAGMQLGDLLTWGAFSYPFAFLVTDLTNRQFGPRIAR- 69
Query: 71 VIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVF 130
RV++ + V+SVL RI++AS A++LGQ+LDI VF
Sbjct: 70 ---RVVVAGFAVAVVLSVL----------------AATPRIAIASGSAFLLGQLLDISVF 110
Query: 131 DRLRRSRHWWTAPVASTILGNLLDTFTFF------FVAFWRSDNPFM------------- 171
+RLRR + WW AP+A +++G+ LDT FF F F +++ F
Sbjct: 111 NRLRR-QTWWQAPLAGSLIGSALDTAMFFSFAFAPFFVFLGANDGFALETAPVLGLLSAD 169
Query: 172 AQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLP 210
A W+ A D VK+ ++L +P YG L++ ++K +P
Sbjct: 170 APRWISWALGDLAVKILCGIVLLLP-YGALMS-VVKPMP 206
>emb|CAE33402.1| (BX640445) putative membrane protein [Bordetella bronchiseptica]
Length = 193
Score = 107 bits (268), Expect = 4e-23
Identities = 69/184 (37%), Positives = 98/184 (53%), Gaps = 33/184 (17%)
Query: 22 VIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALI 81
++++ SN LVQ+P+ W TWG S+P FL TD+ R G AR V
Sbjct: 25 LVVVGSNILVQVPLN--DW-LTWGGLSYPVAFLVTDVLNRRYGPDAARRV---------- 71
Query: 82 ASYVVSVLFQEAAFRGFSALLEFNTFVA--RISLASFLAYVLGQILDIQVFDRLRRSRHW 139
A+ GF+A L + +VA RI+LAS LAY+ Q++DI+VFDRLR R W
Sbjct: 72 ------------AWFGFAAALAVSVWVASPRIALASGLAYLCAQLIDIRVFDRLRDQR-W 118
Query: 140 WTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYG 199
W AP+ S ++G + DT FF VAF SD P WV D +KL++++ + P
Sbjct: 119 WRAPLISGVIGAVADTAVFFSVAFAGSDTP-----WVTWMLGDLAIKLAVNISMLAPFRA 173
Query: 200 MLLN 203
++ N
Sbjct: 174 LMWN 177
>emb|CAE38234.1| (BX640432) putative membrane protein [Bordetella parapertussis]
Length = 193
Score = 106 bits (264), Expect = 1e-22
Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 33/184 (17%)
Query: 22 VIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALI 81
++++ SN LVQ+P+ W TWG S+P FL TD+ R G AR V
Sbjct: 25 LVVVGSNILVQVPLN--DW-LTWGGLSYPVAFLVTDVLNRRYGPDAARRV---------- 71
Query: 82 ASYVVSVLFQEAAFRGFSALLEFNTFVA--RISLASFLAYVLGQILDIQVFDRLRRSRHW 139
A+ GF+A L + +VA RI+LAS LAY+ Q++DI+VFDRLR R W
Sbjct: 72 ------------AWFGFAAALAVSVWVASPRIALASGLAYLCAQLIDIRVFDRLRDQR-W 118
Query: 140 WTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYG 199
W AP+ S ++G + DT FF AF SD P WV D +KL++++ + P
Sbjct: 119 WRAPLISGVIGAVADTAVFFSAAFAGSDTP-----WVTWMLGDLAIKLAVNISMLAPFRA 173
Query: 200 MLLN 203
++ N
Sbjct: 174 LMWN 177
>dbj|BAB50420.1| (AP003002) hypothetical protein [Mesorhizobium loti]
Length = 226
Score = 105 bits (261), Expect = 2e-22
Identities = 73/208 (35%), Positives = 105/208 (50%), Gaps = 35/208 (16%)
Query: 17 IAFHIVIIIASNYLVQLPIT------LFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARL 70
+A ++++ASN LVQ P+ TWGAF++PF FL TDL R G AR
Sbjct: 11 VAAMALVVVASNILVQFPMQGQIGGLSLADLLTWGAFTYPFSFLVTDLANRRYGPAVAR- 69
Query: 71 VIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTF---VARISLASFLAYVLGQILDI 127
R++ + + V S+L FR L+EF T + RI+ AS A++ Q+LD+
Sbjct: 70 ---RIVFVGFMTAVVCSILVPPFLFR--HGLIEFETAADRLVRIAAASGAAFLSAQLLDV 124
Query: 128 QVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRS-------------DNPFM--- 171
VF+RLRR + WW AP+ T++G++ DT FF VAF + P M
Sbjct: 125 TVFNRLRR-QSWWRAPILGTLVGSIFDTMVFFTVAFSAAFAFAGPNDSFALETAPLMGVF 183
Query: 172 ---AQHWVEIATVDYGVKLSISLLLFVP 196
A WV A D VKL I+++ +P
Sbjct: 184 HIEAMRWVSWALGDLSVKLIIAVVALIP 211
>emb|CAE41575.1| (BX640414) putative membrane protein [Bordetella pertussis]
Length = 193
Score = 104 bits (260), Expect = 3e-22
Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 34/194 (17%)
Query: 22 VIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALI 81
++++ SN LVQ+P+ W TWG S+P FL TD+ R G AR V
Sbjct: 25 LVVVGSNILVQVPLN--DW-LTWGGLSYPVAFLVTDVLNRRYGPDAARRV---------- 71
Query: 82 ASYVVSVLFQEAAFRGFSALLEFNTFVA--RISLASFLAYVLGQILDIQVFDRLRRSRHW 139
A+ GF+A L + +VA RI+LAS LAY+ Q++DI+VFDRLR R W
Sbjct: 72 ------------AWFGFAAALAVSVWVASPRIALASGLAYLCAQLIDIRVFDRLRDQR-W 118
Query: 140 WTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYG 199
W AP+ S ++G + DT FF VAF SD P WV D +KL++++ + + L+
Sbjct: 119 WRAPLISGVIGAVADTAVFFSVAFAGSDTP-----WVTWMLGDLAIKLAVNISM-LALFR 172
Query: 200 MLLNGILKMLPGRP 213
L+ + + RP
Sbjct: 173 ALMWNLARPAEARP 186
>gb|AAL51239.1| (AE009449) Hypothetical Membrane Spanning Protein [Brucella
melitensis 16M]
Length = 223
Score = 92.4 bits (228), Expect = 2e-18
Identities = 69/203 (33%), Positives = 97/203 (47%), Gaps = 44/203 (21%)
Query: 22 VIIIASNYLVQLPITLFGWHT--TWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPA 79
V + ASN LVQ P FG T+GAFS+P FL DLT R G AR V+
Sbjct: 25 VAVAASNILVQYPFQHFGLGEVLTYGAFSYPVAFLVNDLTNRRFGPAAARKVV------- 77
Query: 80 LIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHW 139
A +V+ V+ + RI++AS A+++ Q++DI VFDRLRR + W
Sbjct: 78 -YAGFVLGVV------------MSIWLATPRIAIASGSAFLVAQLMDITVFDRLRR-QSW 123
Query: 140 WTAPVASTILGNLLDTFTFFFVAF-----WRSDNPFMAQH---------------WVEIA 179
W AP A+ + G++LDT FF +AF W M W +A
Sbjct: 124 WKAPFAAAMFGSVLDTILFFSIAFAASFSWIDGLTGMLDSSLAEPASFLGLGVPLWASLA 183
Query: 180 TVDYGVKLSISLLLFVPLYGMLL 202
D+ VK+ + L+ +P YG +L
Sbjct: 184 FGDFIVKVVMGTLMLIP-YGAIL 205
>gb|AAN30904.1|AE014490_1 (AE014490) membrane protein, putative [Brucella suis 1330]
Length = 223
Score = 92.4 bits (228), Expect = 2e-18
Identities = 69/203 (33%), Positives = 97/203 (47%), Gaps = 44/203 (21%)
Query: 22 VIIIASNYLVQLPITLFGWHT--TWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPA 79
V + ASN LVQ P FG T+GAFS+P FL DLT R G AR V+
Sbjct: 25 VAVAASNILVQYPFQHFGLGEVLTYGAFSYPVAFLVNDLTNRRFGPAAARKVV------- 77
Query: 80 LIASYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHW 139
A +V+ V+ + RI++AS A+++ Q++DI VFDRLRR + W
Sbjct: 78 -YAGFVLGVV------------MSIWLATPRIAIASGSAFLVAQLMDITVFDRLRR-QSW 123
Query: 140 WTAPVASTILGNLLDTFTFFFVAF-----WRSDNPFMAQH---------------WVEIA 179
W AP A+ + G++LDT FF +AF W M W +A
Sbjct: 124 WKAPFAAAMFGSVLDTILFFSIAFAASFSWIDGLTGMPDSSLAEPASFLGLGVPLWASLA 183
Query: 180 TVDYGVKLSISLLLFVPLYGMLL 202
D+ VK+ + L+ +P YG +L
Sbjct: 184 FGDFIVKVVMGTLMLIP-YGAIL 205
>gb|AAM42871.1| (AE012481) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 185
Score = 91.3 bits (225), Expect = 4e-18
Identities = 67/199 (33%), Positives = 97/199 (48%), Gaps = 34/199 (17%)
Query: 5 SPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLG 64
+P R L + A V+++ SN LVQ PI W TWGAF +P FL ++L R G
Sbjct: 10 APLTVRALLWAVSAMGAVVLL-SNILVQYPIN--DW-LTWGAFLYPLAFLVSNLINRRFG 65
Query: 65 KGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVA--RISLASFLAYVLG 122
AR+V A+ GF+ + + ++A RI++AS A++
Sbjct: 66 PRAARMV----------------------AWCGFALAVVLSIWLATPRIAIASCSAFIAA 103
Query: 123 QILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVD 182
Q+LDI VFDRLR +WW AP+ +T LDT F+ +AF + P W+ A D
Sbjct: 104 QLLDISVFDRLRNG-NWWRAPIVATTCSATLDTAIFWSIAFAGAGLP-----WISWAAGD 157
Query: 183 YGVKLSISLLLFVPLYGML 201
VKL + + L P +L
Sbjct: 158 LAVKLGMGVFLLGPFRALL 176
>gb|AAM35440.1| (AE011682) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 183
Score = 90.9 bits (224), Expect = 5e-18
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 34/199 (17%)
Query: 5 SPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLG 64
+P R + ++A V+++ SN LVQ PI W TWGAFS+P FL ++L R G
Sbjct: 10 APLTARALIWAVLAMGAVVLL-SNILVQYPIN--DW-LTWGAFSYPLAFLVSNLINRRFG 65
Query: 65 KGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALLEFNTFVA--RISLASFLAYVLG 122
AR V A+ GF+ + + ++A RI++AS A++
Sbjct: 66 PRAARHV----------------------AWCGFALAVLLSIWLATPRIAVASCSAFIAA 103
Query: 123 QILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVD 182
Q+LDI VFDRL R WW AP+ +T LDT F+ +AF + P WV A D
Sbjct: 104 QLLDISVFDRL-RDGSWWRAPIVATTCSATLDTTIFWSIAFAGASLP-----WVSWAAGD 157
Query: 183 YGVKLSISLLLFVPLYGML 201
VKL + + L P +L
Sbjct: 158 LAVKLGMGVFLLGPFRALL 176
>gb|AAA96619.1| (L77246) putative [Bacillus subtilis]
Length = 229
Score = 69.7 bits (169), Expect = 1e-11
Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GL + + +N V + LFG T G + IF ATD+ G AR +
Sbjct: 29 GLFVWIGFATVCANLQVVKTVELFGLTATLGNVMYGTIFFATDVLNEKYGPAEARKAVWL 88
Query: 75 VMIPALIASYVVS-VLFQEAAFRGFS--ALLEFNTFVARISLASFLAYVLGQILDIQVFD 131
L ++V+ VL E A S AL F+ R++L S LA++ Q LD+ V+
Sbjct: 89 GFSTLLTLTFVMQGVLLFEPASSDISQTALETIFGFLPRVALGSLLAFIFSQTLDVYVYS 148
Query: 132 RLRR----SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKL 187
+RR R W ST + L DTF F VAF + A W+ I Y +K
Sbjct: 149 AIRRIFPSDRLLWLRNGGSTAVSQLFDTFIFTAVAFL---GIYPADVWLHIFISTYLIKF 205
Query: 188 SISLLLFVPLYGMLLNGILKMLPGRPQSN 216
++SL+ Y KM+P +S+
Sbjct: 206 AVSLISLPYAY-----AAKKMIPNDERSS 229
>emb|CAB14116.1| (Z99115) ypdP [Bacillus subtilis subsp. subtilis str. 168]
Length = 229
Score = 69.7 bits (169), Expect = 1e-11
Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GL + + +N V + LFG T G + IF ATD+ G AR +
Sbjct: 29 GLFVWIGFATVCANLQVVKTVELFGLTATLGNVMYGTIFFATDVLNEKYGPAEARKAVWL 88
Query: 75 VMIPALIASYVVS-VLFQEAAFRGFS--ALLEFNTFVARISLASFLAYVLGQILDIQVFD 131
L ++V+ VL E A S AL F+ R++L S LA++ Q LD+ V+
Sbjct: 89 GFSTLLTLTFVMQGVLLFEPASSDISQTALETIFGFLPRVALGSLLAFIFSQTLDVYVYS 148
Query: 132 RLRR----SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKL 187
+RR R W ST + L DTF F VAF + A W+ I Y +K
Sbjct: 149 AIRRIFPSDRLLWLRNGGSTAVSQLFDTFIFTAVAFL---GIYPADVWLHIFISTYLIKF 205
Query: 188 SISLLLFVPLYGMLLNGILKMLPGRPQSN 216
++SL+ Y KM+P +S+
Sbjct: 206 AVSLISLPYAY-----AAKKMIPNDERSS 229
>gb|AAP78434.1| (AE017149) hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 190
Score = 62.8 bits (151), Expect = 1e-09
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 24/143 (16%)
Query: 23 IIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIA 82
II+ +NY VQ P+ T+GA ++P FL D+ L + ++ + +++ LI
Sbjct: 19 IIVLANYSVQYPV--LDTPLTYGALTYPMSFLLIDI----LSEKYNKIQVLKILWCGLIL 72
Query: 83 SYVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRL--RRSRHWW 140
+++ S+L E + I++AS A+ + Q LD+ +F L R R WW
Sbjct: 73 AFIPSLLASELS----------------IAIASVCAFFVSQNLDVHIFFYLKSRFPRLWW 116
Query: 141 TAPVASTILGNLLDTFTFFFVAF 163
ASTI+ +DT FF +AF
Sbjct: 117 LRNNASTIIAQFIDTMIFFHIAF 139
>gb|AAN49406.1|AE011391_11 (AE011391) conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 258
Score = 62.8 bits (151), Expect = 1e-09
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L AF + +I + FG+ T G FP F+ TDL G+ R
Sbjct: 36 LNAFFLSFLILAEVTGSKLFVSFGFTLTMGVIPFPVTFIVTDLLNEYFGRKGVRFTTLVG 95
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALLEFNTFV-----ARISLASFLAYVLGQILDIQVF 130
M+ +A Y + VL S + + + V ++ + S +AY++GQ++DIQ+F
Sbjct: 96 MVMIFVA-YFLLVLDMSIPAAPNSPVDDHSFNVVFGNSGKVIVGSIVAYLIGQLIDIQIF 154
Query: 131 DRLR---RSRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDY---- 183
LR +++ W STI+ L+D+F ++A F Q +I+T ++
Sbjct: 155 HFLRVKTNNKYIWLRATGSTIVSQLVDSFVVIYIALGGGKLSF--QELNQISTNNFLYKC 212
Query: 184 GVKLSISLLLFV 195
GV ++I+ L++V
Sbjct: 213 GVAIAITPLIYV 224
>gb|AAM04076.1| (AE010725) conserved hypothetical protein [Methanosarcina
acetivorans str. C2A] [Methanosarcina acetivorans C2A]
Length = 227
Score = 60.5 bits (145), Expect = 7e-09
Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
L+A I ++ N L I +FG T+ G F +P FL TD+ + GK I ++
Sbjct: 11 LLAVFISSLLLGNLLGSKLIEIFGIVTSVGLFGYPVTFLITDIVEEVRGK-----EITKI 65
Query: 76 MIPALIASYVVSVLFQEAAFRGFSALL-----EFNTFVA---RISLASFLAYVLGQILDI 127
+ A + S ++VLF + S+ L +N+ + RI LAS A+V+ Q D+
Sbjct: 66 FVHAGLLSLFIAVLFVFVSTGFPSSSLYPHSEAYNSVFSNSLRIILASMTAFVISQYHDL 125
Query: 128 QVFDRLRR---SRHWWTAPVASTILGNLLDTFTFFFVAFWRS 166
F+ R+ R W STI+ L+D+ F F+AF+ +
Sbjct: 126 WAFNFWRQKTNGRCLWFRNNLSTIVSQLIDSIVFTFIAFYHA 167
>dbj|BAB42525.1| (AP003133) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315]
Length = 234
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GLIA+ + I +N V + +FG T G F I+LATD+ + G+ A+ +
Sbjct: 29 GLIAWVAIGTIIANIQVIKTVEIFGISATLGNVMFASIYLATDILNDIYGRRVAKRAVWL 88
Query: 75 VMIPALIASYVVSVLF------QEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQ 128
LI V+ + ++ A + A+ + V RI+L S +AY++GQ +D+
Sbjct: 89 GFSSTLIMIIVMQLSLHFIPAPEDMAQKALHAIFD---VVPRIALGSIVAYIIGQHIDVF 145
Query: 129 VFDRLRR----SRHWWTAPVASTILGNLLDTFTFFFVAF 163
+F +++ + ++ ST L +++DT F +AF
Sbjct: 146 IFSLIKKVFSSDKTFFIRAYGSTFLSSIIDTALFVAIAF 184
>dbj|BAB95186.1| (AP004826) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus MW2]
Length = 234
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GLIA+ + I +N V + +FG T G F I+LATD+ + G+ A+ +
Sbjct: 29 GLIAWVAIGTIIANIQVIKTVEIFGISATLGNVMFASIYLATDILNDIYGRRVAKRAVWL 88
Query: 75 VMIPALIASYVVSVLF------QEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQ 128
LI V+ + ++ A + A+ + V RI+L S +AY++GQ +D+
Sbjct: 89 GFSSTLIMIIVMQLSLHFIPAPEDMAQKALHAIFD---VVPRIALGSIVAYIIGQHIDVF 145
Query: 129 VFDRLRR----SRHWWTAPVASTILGNLLDTFTFFFVAF 163
+F +++ + ++ ST L +++DT F +AF
Sbjct: 146 IFSLIKKVFSSDKTFFIRAYGSTFLSSIIDTALFVAIAF 184
>dbj|BAB57594.1| (AP003362) conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 234
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GLIA+ + I +N V + +FG T G F I+LATD+ + G+ A+ +
Sbjct: 29 GLIAWVAIGTIIANIQVIKTVEIFGISATLGNVMFASIYLATDILNDIYGRRVAKRAVWL 88
Query: 75 VMIPALIASYVVSVLF------QEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQ 128
LI V+ + ++ A + A+ + V RI+L S +AY++GQ +D+
Sbjct: 89 GFSSTLIMIIVMQLSLHFIPAPEDMAQKALHAIFD---VVPRIALGSIVAYIIGQHIDVF 145
Query: 129 VFDRLRR----SRHWWTAPVASTILGNLLDTFTFFFVAF 163
+F +++ + ++ ST L +++DT F +AF
Sbjct: 146 IFSLIKKVFSSDKTFFIRAYGSTFLSSIIDTALFVAIAF 184
>gb|AAO04723.1|AE016747_220 (AE016747) conserved hypothetical protein [Staphylococcus
epidermidis ATCC 12228]
Length = 234
Score = 57.8 bits (138), Expect = 5e-08
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GLIA+ + I +N V + +FG T G F I+LATD+ + G+ A+ +
Sbjct: 29 GLIAWVAIGTIIANIQVIKAVHIFGITATLGNVMFASIYLATDILNDIYGRKVAKRAVWL 88
Query: 75 VMIPALIASYVVSV---LFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFD 131
L+ V+ + ++L V RI++ S +AY++GQ +D+ +F
Sbjct: 89 GFSSTLVMIIVMQMSLHFIPAPVDNAQNSLKMIFDLVPRIAIGSIIAYIIGQHIDVFIFS 148
Query: 132 RLRR----SRHWWTAPVASTILGNLLDTFTFFFVAF 163
+++ + ++ STIL +++DT F +AF
Sbjct: 149 MIKKIFSSDKTFFIRAYGSTILSSIIDTGLFVSIAF 184
>gb|AAB89147.1| (AE000958) conserved hypothetical protein [Archaeoglobus fulgidus
DSM 4304]
Length = 241
Score = 55.5 bits (132), Expect = 2e-07
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GL A+ + II +N V I FG T G + FL TD+ GK A+ +
Sbjct: 29 GLYAWTAMAIILANIQVMKTIRFFGLVTAMGNIVYGTTFLVTDILCENYGKREAKKAVEV 88
Query: 75 VMIPALIASYVVSVLFQEAAFRGFSA---LLEFNTFVARISLASFLAYVLGQILDIQVFD 131
++ + ++ + + L + + RI++AS AY++ Q+ D+ FD
Sbjct: 89 GFFVLVVFTLLMQICLAFIPHESDTLSPHLEQIFGIMPRITVASLTAYLVSQLHDVWAFD 148
Query: 132 ---RLRRSRHWWTAPVASTILGNLLDTFTFFFVAF 163
R + R W AST++ L+D F ++AF
Sbjct: 149 FWKRRTKGRFLWLRNNASTMVSQLIDNAVFTWIAF 183
>gb|AAM40644.1| (AE012234) conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 276
Score = 55.5 bits (132), Expect = 2e-07
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 28/178 (15%)
Query: 43 TWGAFSFPFIFLATD----------------LTVRLLGKGPARLVIARVMIPA---LIAS 83
T G +P +F+ TD + V L+G G A + PA + A+
Sbjct: 80 TAGTLLWPVVFIMTDTINEFFGSRGVRFISWVAVGLIGYGFVFAFAAIALAPAGWWVTAA 139
Query: 84 YVVSVLFQEAAFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRRS---RHWW 140
V +AAF F + I S +A++ GQ++D+ VF R+RR+ +H W
Sbjct: 140 QSQGVPDYQAAFAAV-----FGQGLWTIG-GSLVAFLFGQLIDVSVFHRIRRATGEKHVW 193
Query: 141 TAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLY 198
ST + L+D+F ++AF + ++ ++T++Y K+ ++ L LY
Sbjct: 194 LRATGSTAVSQLVDSFVVIYIAFVLGPQHWSIDQFLAVSTLNYLYKMGFAIALIPLLY 251
>gb|AAM31496.1| (AE013416) Transporter [Methanosarcina mazei Goe1]
Length = 229
Score = 54.7 bits (130), Expect = 4e-07
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARV 75
++ I ++ N L + +FG T+ G F +P FL TD+ + G+ ++ +
Sbjct: 1 MLTIFISSLLLGNLLGGKLVEIFGIVTSVGLFGYPPTFLITDIVEEVKGREVTKIFVHAG 60
Query: 76 MIPALIASYVVSVL----------FQEAAFRGFSALLEFNTFVARISLASFLAYVLGQIL 125
+ IA + + V EA FS L RI LAS +A+++ Q
Sbjct: 61 FLSLCIALFFIFVSTGLPPSPLYPHNEAYNHVFSGSL-------RIILASMIAFLISQYH 113
Query: 126 DIQVFD---RLRRSRHWWTAPVASTILGNLLDTFTFFFVAFWRS 166
DI F+ + R W STI+ LLD+ F F+AF+ +
Sbjct: 114 DIWAFNFWKKKTNGRCLWLRNNLSTIVSQLLDSTVFMFIAFYHA 157
>gb|AAC66433.1| (AE001118) conserved hypothetical integral membrane protein
[Borrelia burgdorferi B31]
Length = 224
Score = 53.9 bits (128), Expect = 7e-07
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 7/183 (3%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GL A+ V II +N V IT+FG + T G + ++ATD+ G+ ++ +
Sbjct: 29 GLFAWVAVAIIIANIQVLKQITIFGINATLGNIIYTSSYIATDMLSEFYGEKTSKKAVYI 88
Query: 75 VMIPALIASYVVSVLFQEAAFR---GFSALLEFNTFVARISLASFLAYVLGQILDIQVFD 131
I +I + + + + R F +L + + + LAS +AY++ Q+ D+ ++
Sbjct: 89 GFISFIIFAVLTNAQIHFMSNRTQENFKSLGNIFSSMPALLLASLVAYLISQLNDVYLYQ 148
Query: 132 RLRRS--RHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSI 189
+++ R + ST++ L+DT F +A + F Q ++ I Y +K
Sbjct: 149 LIKKKFPRFLFFRTNGSTLISGLIDTTIFVGIATY--FKVFPKQAFLNIVIFTYVIKAVA 206
Query: 190 SLL 192
+L
Sbjct: 207 GVL 209
>gb|AAM36265.1| (AE011771) conserved hypothetical protein [Xanthomonas axonopodis
pv. citri str. 306]
Length = 255
Score = 53.9 bits (128), Expect = 7e-07
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 19/184 (10%)
Query: 43 TWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSALL 102
T G +P +F+ TD G R I+ V + + +V + A G+
Sbjct: 59 TAGTLLWPIVFIMTDTINEFFGSRGVRF-ISWVAVVLIGYGFVFAFAAIALAPAGWWVTA 117
Query: 103 EFNTFVARISLA--------------SFLAYVLGQILDIQVFDRLRR---SRHWWTAPVA 145
N V A S +A++ Q++D+ VF R+RR +H W
Sbjct: 118 AQNQGVPDYQAAFAAVFGQGLWTIGGSLVAFLFSQLIDVSVFHRIRRVTGEKHVWLRATG 177
Query: 146 STILGNLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKLSISLLLFVPLYGMLLNGI 205
ST + ++D+F ++AF + ++ ++T++Y K+ ++LL +PL + GI
Sbjct: 178 STAVSQVVDSFVVIYIAFVLGPQHWSIDQFLAVSTLNYIYKMGFAVLL-IPLLYLARRGI 236
Query: 206 LKML 209
L
Sbjct: 237 TAYL 240
>gb|AAD35874.1|AE001747_17 (AE001747) conserved hypothetical protein [Thermotoga maritima]
Length = 212
Score = 53.9 bits (128), Expect = 7e-07
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 49 FPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYV--VSVLFQEAA-FRGFSALLEFN 105
+P F TD+ + GK A+ ++ +LI ++V + A+ F A ++
Sbjct: 44 YPITFAVTDIVSEVYGKRTAQKMVWTGFFTSLILVIYSQIAVFYPPASIFANNEAFVKVF 103
Query: 106 TFVARISLASFLAYVLGQILDIQVFD---RLRRSRHWWTAPVASTILGNLLDTFTFFFVA 162
RI LAS LAY+L Q D+ F ++ R H W ST++ +DT TF VA
Sbjct: 104 GSTPRIVLASILAYILSQTHDVWAFHFWKKITRGSHLWLRNNLSTMVSQFIDTLTFITVA 163
Query: 163 FWRSDNPFMAQHWVEIATVDYGVKLSISLL 192
F V++ Y VKL ++L+
Sbjct: 164 F---AGTIPGNVLVQMIFSQYVVKLIMALI 190
>gb|AAL94086.1| (AE010502) Transporter [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 235
Score = 50.4 bits (119), Expect = 7e-06
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 12/161 (7%)
Query: 15 GLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIAR 74
GL + + I +N V + + LFG T G + FL TD+ GK A + +
Sbjct: 30 GLYIWVPISTILANVQVVILVNLFGLEATLGNILYAGGFLITDILSENYGKKAANTAV-K 88
Query: 75 VMIPALIASYVV---SVLFQEAAFRGFSALLE----FNTFVARISLASFLAYVLGQILDI 127
+ +LIA+ ++ ++ F+ A+ E + + R+++AS +AY++ Q D+
Sbjct: 89 IGFFSLIATTLIMQCAIHFKPLDISEGLAIFESVKGIFSLLPRLAIASLIAYLISQFHDV 148
Query: 128 QVFDRLR----RSRHWWTAPVASTILGNLLDTFTFFFVAFW 164
++ ++R + W ST+L L+D F +AF+
Sbjct: 149 WLYHKIREFFPEKKFIWLRNNGSTMLSQLIDNVVFTTIAFY 189
>dbj|BAB97626.1| (AP005274) Uncharacterized ACR [Corynebacterium glutamicum ATCC
13032]
Length = 246
Score = 50.4 bits (119), Expect = 7e-06
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 16 LIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTVRLLG-KGPARLVIAR 74
L+A + + + SN + + T F FP ++ D+ G K R ++
Sbjct: 42 LLALFVAVFLISNITATKGVEIGPLVTDGAFFLFPISYVLGDVLAECYGFKSTRRAILTG 101
Query: 75 VMIPALIA-SYVVSVLFQEAAF-RGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDR 132
I L A S+ +S+ A+F G A V +I +AS Y++GQ+L+ +V
Sbjct: 102 FGITMLAALSFYISIWLPGASFWEGQEAFEATLGLVPQIIVASLAGYIVGQLLNAKVLVA 161
Query: 133 LRR---SRHWWTAPVASTILGNLLDTFTFFFVA 162
+++ + W + ST++G +DT F +A
Sbjct: 162 IKKRTGEKSLWARLIGSTVVGEFVDTLLFCAIA 194
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.331 0.143 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,656,709
Number of Sequences: 559965
Number of extensions: 2659117
Number of successful extensions: 8728
Number of sequences better than 1.0e-02: 61
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 8629
Number of HSP's gapped (non-prelim): 61
length of query: 217
length of database: 168,382,221
effective HSP length: 112
effective length of query: 105
effective length of database: 105,666,141
effective search space: 11094944805
effective search space used: 11094944805
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 92 (40.0 bits)