BLASTP 2.2.6 [Apr-09-2003]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: gbbct 
           559,965 sequences; 168,382,221 total letters

Query= 1956
         (328 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG03416.1|AE004442_3  (AE004442) hypothetical protein [P...   685   0.0   

>gb|AAG03416.1|AE004442_3 (AE004442) hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 328

 Score =  685 bits (1767), Expect = 0.0
 Identities = 327/328 (99%), Positives = 327/328 (99%)

Query: 1   MKTFARLAAGLCICAIASQANAWSQPTHKNIVKDALAFMNSSYATEEMRQAYRFYVSAAG 60
           MKTFARLAAGLCICAIASQANAWSQPTHKNIVKDALAFMNSSYATEEMRQAYRFYVSAAG
Sbjct: 1   MKTFARLAAGLCICAIASQANAWSQPTHKNIVKDALAFMNSSYATEEMRQAYRFYVSAAG 60

Query: 61  SEAQAGEILGQAAFDVDDFKDTRLGGWWVGYEHAPLWGAASGIVNYTSYWHFLNLARDGD 120
           SEAQAGEILGQAAFDVDDFKDTRLGGWWVGYEHAPLWGAASGIVNYTSYWHFLNLARDGD
Sbjct: 61  SEAQAGEILGQAAFDVDDFKDTRLGGWWVGYEHAPLWGAASGIVNYTSYWHFLNLARDGD 120

Query: 121 SHGNPHGGYDYRYHKVDGGIADVDWYAMVYLYNRELKREDFDTTEAHYRQGTRSDWQEHY 180
           SHGNPHGGYDYRYHKVDGGIADVDWYAMVYLYNRELKREDFDTTEAHYRQGTRSDWQEHY
Sbjct: 121 SHGNPHGGYDYRYHKVDGGIADVDWYAMVYLYNRELKREDFDTTEAHYRQGTRSDWQEHY 180

Query: 181 GDFQTAAFQPIDNLATYWFEQFRAAPSLQTIGYALHATGDVAQPHHVWITSANGHSSWEG 240
           GDFQTAAFQPIDNLATYWFEQFRAAPSLQTIGYALHATGDVAQPHHVWITSANGHSSWEG
Sbjct: 181 GDFQTAAFQPIDNLATYWFEQFRAAPSLQTIGYALHATGDVAQPHHVWITSANGHSSWEG 240

Query: 241 WVDDHYASEKLNDPAAVANLVGRYDPSKSIRDLLTQTGQVAYARPEPLYDTSYETRLRVA 300
           WVDDHYASEKLNDPAAVANLVGRYDPSKSIRDLLTQTGQVAYARPEPLYDTSYETRLRVA
Sbjct: 241 WVDDHYASEKLNDPAAVANLVGRYDPSKSIRDLLTQTGQVAYARPEPLYDTSYETRLRVA 300

Query: 301 KELIPESIALTVTVLTKGANSFDAQTAL 328
           KELIPESIALTVTVLTKGANSFDA TAL
Sbjct: 301 KELIPESIALTVTVLTKGANSFDAPTAL 328



  Database: gbbct
    Posted date:  Sep 29, 2003  6:22 PM
  Number of letters in database: 35,829,034
  Number of sequences in database:  119,422
  
  Database: /blastdb/gbbct/gbbct2.aso
    Posted date:  Sep 29, 2003  6:23 PM
  Number of letters in database: 46,604,961
  Number of sequences in database:  153,703
  
  Database: /blastdb/gbbct/gbbct3.aso
    Posted date:  Sep 29, 2003  6:24 PM
  Number of letters in database: 37,964,456
  Number of sequences in database:  126,043
  
  Database: /blastdb/gbbct/gbbct4.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 44,801,584
  Number of sequences in database:  150,186
  
  Database: /blastdb/gbbct/gbbct5.aso
    Posted date:  Sep 29, 2003  6:29 PM
  Number of letters in database: 3,182,186
  Number of sequences in database:  10,611
  
Lambda     K      H
   0.318    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,527,715
Number of Sequences: 559965
Number of extensions: 5235579
Number of successful extensions: 12239
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12238
Number of HSP's gapped (non-prelim): 1
length of query: 328
length of database: 168,382,221
effective HSP length: 117
effective length of query: 211
effective length of database: 102,866,316
effective search space: 21704792676
effective search space used: 21704792676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 95 (41.2 bits)