Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03392.1|AE004440_2 (AE004440) DNA polymerase III, bet... 709 0.0
gb|AAO53559.1| (AE016856) DNA polymerase III, beta subunit ... 630 e-180
gb|AAN65645.1|AE016191_2 (AE016774) DNA polymerase III, bet... 621 e-177
emb|CAA32894.1| (X14791) unnamed protein product [Pseudomon... 621 e-177
gb|AAN53096.1|AE015452_9 (AE015452) DNA polymerase III, bet... 414 e-115
gb|AAO89572.1| (AE016960) DNA polymerase III, beta subunit ... 411 e-114
gb|AAM39321.1| (AE012093) DNA polymerase III beta chain [Xa... 402 e-111
gb|AAL30090.1| (AY057934) DNA polymerase III beta chain [Xa... 400 e-111
gb|AAM34894.1| (AE011623) DNA polymerase III beta chain [Xa... 400 e-111
gb|AAL22696.1| (AE008879) DNA polymerase III, beta-subunit ... 399 e-110
gb|AAO71178.1| (AE016846) DNA polymerase III beta-subunit [... 399 e-110
emb|CAD03158.1| (AL627280) DNA polymerase III beta-subunit ... 399 e-110
gb|AAB87631.1| (AF034747) DNA polymerase III beta clamp sub... 399 e-110
gb|AAN83056.1|AE016769_171 (AE016769) DNA polymerase III, b... 397 e-110
gb|AAG58898.1|AE005601_4 (AE005601) DNA polymerase III, bet... 397 e-110
gb|AAC76724.1| (AE000447) DNA polymerase III, beta-subunit ... 397 e-110
gb|AAB59150.1| (J01602) DNA polymerase III beta-subunit [Es... 397 e-110
gb|AAA62052.1| (L10328) DNA polymerase III beta-subunit [Es... 397 e-110
dbj|BAB38059.1| (AP002566) DNA polymerase III beta-subunit ... 397 e-110
gb|AAP18991.1| (AE016991) DNA polymerase III, beta-subunit ... 397 e-110
gb|AAF93191.1| (AE004093) DNA polymerase III, beta chain [V... 391 e-108
dbj|BAC58275.1| (AP005073) DNA polymerase III, beta chain [... 390 e-108
gb|AAO09487.1|AE016800_92 (AE016800) DNA polymerase III, be... 390 e-108
gb|AAA83959.1| (M58352) DNA polymerase III beta subunit [Pr... 385 e-106
gb|AAM87654.1|AE014012_11 (AE014012) DNA polymerase III, be... 385 e-106
emb|CAC93546.1| (AJ414160) DNA polymerase III, beta subunit... 385 e-106
gb|AAP95741.1| (AE017153) DNA polymerase III beta chain [Ha... 380 e-105
gb|AAF82815.1|AE003855_2 (AE003855) DNA polymerase III, bet... 374 e-103
gb|AAO27910.1| (AE012553) DNA polymerase III beta chain [Xy... 371 e-102
gb|AAK03244.1| (AE006156) DnaN [Pasteurella multocida] 370 e-102
gb|AAC22654.1| (U32780) DNA polymerase III, beta subunit (d... 368 e-101
gb|AAN45206.1|AE015383_6 (AE015383) DNA polymerase III, bet... 342 3e-93
emb|CAB83846.1| (AL162753) putative DNA polymerase III, bet... 318 3e-86
emb|CAD16938.1| (AL646075) PROBABLE DNA POLYMERASE III (BET... 318 4e-86
gb|AAF42232.1| (AE002539) DNA polymerase III, beta subunit ... 315 2e-85
emb|CAE39679.1| (BX640436) DNA polymerase iii, beta chain [... 313 1e-84
emb|CAE44819.1| (BX640412) DNA polymerase iii, beta chain [... 312 2e-84
emb|CAE35352.1| (BX640452) DNA polymerase iii, beta chain [... 312 2e-84
dbj|BAC46094.1| (AP005937) DNA polymerase III beta chain [B... 289 2e-77
gb|AAL53123.1| (AE009627) DNA POLYMERASE III, BETA CHAIN [B... 278 4e-74
gb|AAN28960.1|AE014315_2 (AE014315) DNA polymerase III, bet... 278 4e-74
gb|AAL41323.1| (AE009001) DNA polymerase III, beta chain [A... 277 6e-74
gb|AAK86116.1| (AE007968) AGR_C_520p [Agrobacterium tumefac... 277 6e-74
emb|CAC41772.1| (AL591783) PROBABLE DNA POLYMERASE III, BET... 273 1e-72
dbj|BAB52002.1| (AP003007) DNA polymerase III beta subunit ... 273 1e-72
gb|AAK22143.1| (AE005689) DNA polymerase III, beta subunit ... 266 1e-70
gb|AAB51448.1| (U37793) DNA polymerase III beta subunit [Ca... 266 1e-70
gb|AAM67583.1| (AE014077) DNA polymerase III beta chain [Bu... 257 7e-68
gb|AAC38107.1| (AF008210) DNA polymerase III beta subunit [... 257 7e-68
gb|AAA73150.1| (M80817) dnaN [Buchnera aphidicola] 257 7e-68
emb|CAD83913.1| (BX321856) DNA polymerase III, beta chain [... 257 9e-68
gb|AAG33956.1|AF197896_1 (AF197896) DNA polymerase III beta... 256 2e-67
dbj|BAB12739.1| (AP001118) DNA polymerase III beta chain [B... 250 1e-65
gb|AAF19207.1|AF213932_1 (AF213932) DNA polymerase III beta... 248 5e-65
dbj|BAC24161.1| (AB063521) dnaN [Wigglesworthia brevipalpis... 245 4e-64
gb|AAG33954.1|AF197894_1 (AF197894) DNA polymerase III beta... 244 6e-64
gb|AAG33955.1|AF197895_1 (AF197895) DNA polymerase III beta... 243 2e-63
gb|AAG33953.1|AF197893_1 (AF197893) DNA polymerase III beta... 242 3e-63
gb|AAG33952.1|AF197892_1 (AF197892) DNA polymerase III beta... 240 9e-63
gb|AAF19206.1|AF213931_1 (AF213931) DNA polymerase III beta... 239 2e-62
gb|AAF19208.1|AF213933_1 (AF213933) DNA polymerase III beta... 239 3e-62
gb|AAG33951.1| (AF197891) DNA polymerase III beta subunit [... 238 3e-62
gb|AAG33948.1|AF197888_1 (AF197888) DNA polymerase III beta... 238 3e-62
gb|AAG33950.1| (AF197890) DNA polymerase III beta subunit [... 238 4e-62
gb|AAF19209.1|AF213934_1 (AF213934) DNA polymerase III beta... 236 2e-61
emb|CAD83544.1| (BX248584) DNA polymerase III beta-subunit ... 235 3e-61
gb|AAG33949.1| (AF197889) DNA polymerase III beta subunit [... 235 4e-61
gb|AAG33947.1|AF197887_1 (AF197887) DNA polymerase III beta... 232 3e-60
gb|AAG33943.1|AF197883_1 (AF197883) DNA polymerase III beta... 230 9e-60
gb|AAK21716.1| (AF196394) DnaN [Buchnera aphidicola] 230 1e-59
gb|AAK21708.1| (AF196385) DnaN [Buchnera aphidicola] 230 1e-59
gb|AAG33942.1|AF197882_1 (AF197882) DNA polymerase III beta... 230 1e-59
gb|AAK21713.1| (AF196390) DnaN [Buchnera aphidicola] 229 2e-59
gb|AAK21711.1| (AF196388) DnaN [Buchnera aphidicola] 229 3e-59
gb|AAK21721.1| (AF196399) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21720.1| (AF196398) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21719.1| (AF196397) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21718.1| (AF196396) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21717.1| (AF196395) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21715.1| (AF196393) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21714.1| (AF196391) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21712.1| (AF196389) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21710.1| (AF196387) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21709.1| (AF196386) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21707.1| (AF196384) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21706.1| (AF196383) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21705.1| (AF196382) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21704.1| (AF196380) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21703.1| (AF196379) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21702.1| (AF196378) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAK21701.1| (AF196377) DnaN [Buchnera aphidicola] 228 4e-59
gb|AAG33945.1|AF197885_1 (AF197885) DNA polymerase III beta... 228 4e-59
gb|AAG33944.1|AF197884_1 (AF197884) DNA polymerase III beta... 228 4e-59
gb|AAG33946.1|AF197886_1 (AF197886) DNA polymerase III beta... 227 1e-58
gb|AAO26755.1| (AE014016) putative DNA polymerase III beta ... 219 2e-56
gb|AAK77989.1|AE007513_2 (AE007513) DNA polymerase III beta... 184 1e-45
gb|AAN39865.1| (AY142230) DnaN protein [Salmonella typhi] 177 7e-44
gb|AAN39857.1| (AY142222) DnaN protein [Salmonella enteriti... 177 7e-44
gb|AAN39856.1| (AY142221) DnaN protein [Salmonella enterica... 177 7e-44
gb|AAL03121.1| (AE008619) DNA polymerase III beta chain [EC... 177 1e-43
>gb|AAG03392.1|AE004440_2 (AE004440) DNA polymerase III, beta chain [Pseudomonas aeruginosa
PAO1]
Length = 367
Score = 709 bits (1830), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE
Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE
Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC
Sbjct: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG
Sbjct: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ
Sbjct: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY
Sbjct: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
Query: 361 VVMPMRL 367
VVMPMRL
Sbjct: 361 VVMPMRL 367
>gb|AAO53559.1| (AE016856) DNA polymerase III, beta subunit [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 367
Score = 630 bits (1625), Expect = e-180
Identities = 323/367 (88%), Positives = 343/367 (93%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVV+GQQLSLTGTDLEVELVGRV LE
Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
+ AEPGEITVPARKLMDICKSLPND LIDI++++ KL+VKAGRSRFTLSTLPANDFPTVE
Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKLDDSKLIVKAGRSRFTLSTLPANDFPTVE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
EGPGSL F++ QSKLRRLI+RTSFAMAQQDVRYYLNGMLLEV+ G LR+VATDGHRLAMC
Sbjct: 121 EGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILRAVATDGHRLAMC 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
S+ A I DRHQVIVPRKGILE+ARLLTEQDG V IVLGQHHIRATTGEFTFTSKLVDG
Sbjct: 181 SMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDG 240
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
KFPDYERVLP+GGDKLV+GDRQ LREAFSRTAILSNEKYRGIRLQL+NG LKIQANNPEQ
Sbjct: 241 KFPDYERVLPKGGDKLVLGDRQSLREAFSRTAILSNEKYRGIRLQLANGQLKIQANNPEQ 300
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEAEEE+ VEYNG LEIGFNVSYLLDVL V+ TEQVR ILSDSNSSALV E+DNDDSAY
Sbjct: 301 EEAEEEIGVEYNGEALEIGFNVSYLLDVLSVMTTEQVRLILSDSNSSALVQESDNDDSAY 360
Query: 361 VVMPMRL 367
VVMPMRL
Sbjct: 361 VVMPMRL 367
>gb|AAN65645.1|AE016191_2 (AE016774) DNA polymerase III, beta subunit [Pseudomonas putida
KT2440]
Length = 367
Score = 621 bits (1601), Expect = e-177
Identities = 319/367 (86%), Positives = 342/367 (93%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVV+GQQLSLTGTDLEVELVGRV LE
Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
+ AEPGEITVPARKLMDICKSLPND LIDI+V+EQKLLVKAGRSRFTLSTLPANDFPTVE
Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
EGPGSL ++ QSKLRRLI+RTSFAMAQQDVRYYLNGMLLEV+ TLR+V+TDGHRLA+C
Sbjct: 121 EGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALC 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
S+ A I +DRHQVIVPRKGILELARLLT+ +G V IVLGQHHIRATTGEFTFTSKLVDG
Sbjct: 181 SMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDG 240
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
KFPDYERVLP+GGDKLVVGDRQ LREAFSRTAILSNEKYRGIRLQL+ G LKIQANNPEQ
Sbjct: 241 KFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQANNPEQ 300
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEAEEE+ V+Y G +LEIGFNVSYLLDVLGV+ TEQVR ILSDSNSSAL+ EA NDDS+Y
Sbjct: 301 EEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALLQEAGNDDSSY 360
Query: 361 VVMPMRL 367
VVMPMRL
Sbjct: 361 VVMPMRL 367
>emb|CAA32894.1| (X14791) unnamed protein product [Pseudomonas putida]
Length = 367
Score = 621 bits (1601), Expect = e-177
Identities = 319/367 (86%), Positives = 342/367 (93%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVV+GQQLSLTGTDLEVELVGRV LE
Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
+ AEPGEITVPARKLMDICKSLPND LIDI+V+EQKLLVKAGRSRFTLSTLPANDFPTVE
Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQKLLVKAGRSRFTLSTLPANDFPTVE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
EGPGSL ++ QSKLRRLI+RTSFAMAQQDVRYYLNGMLLEV+ TLR+V+TDGHRLA+C
Sbjct: 121 EGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLALC 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
S+ A I +DRHQVIVPRKGILELARLLT+ +G V IVLGQHHIRATTGEFTFTSKLVDG
Sbjct: 181 SMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTSKLVDG 240
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
KFPDYERVLP+GGDKLVVGDRQ LREAFSRTAILSNEKYRGIRLQL+ G LKIQANNPEQ
Sbjct: 241 KFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQANNPEQ 300
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEAEEE+ V+Y G +LEIGFNVSYLLDVLGV+ TEQVR ILSDSNSSAL+ EA NDDS+Y
Sbjct: 301 EEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALLQEAGNDDSSY 360
Query: 361 VVMPMRL 367
VVMPMRL
Sbjct: 361 VVMPMRL 367
>gb|AAN53096.1|AE015452_9 (AE015452) DNA polymerase III, beta subunit [Shewanella oneidensis
MR-1]
Length = 366
Score = 414 bits (1063), Expect = e-115
Identities = 211/369 (57%), Positives = 271/369 (73%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F+I R+ALLKPLQLV G VERR LP+L+N+L+ V G L LTGTDLEVELVG+ V+
Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVIH 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
E G TVPA+KL+DI KSLP + + ++ K L+++GRSRF+L+TLPA ++P VE
Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQDNKWLLRSGRSRFSLATLPAEEYPNVE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ F++ Q L+ LID T F+MA QDVRYYLNG+L+E G LR++ATDGHRLA+
Sbjct: 121 AFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLRAIATDGHRLALS 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
++AQ+P + QVIVPRKG++E+ARLL D ++ I +G + IRATT FTSKLV
Sbjct: 181 HRVIEAQLPEK---QVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+GGDK+V+ R ++A +R +ILSNEK+RG+R+QL GLLKI ANNP
Sbjct: 238 DGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V+YN LEIGFNVSYLLDVL + ++ VR L D NSSAL+ +DS
Sbjct: 298 EQEEAEEIIDVDYNNLPLEIGFNVSYLLDVLNNLKSDDVRITLIDGNSSALLENHLEEDS 357
Query: 359 AYVVMPMRL 367
YVVMPMRL
Sbjct: 358 MYVVMPMRL 366
>gb|AAO89572.1| (AE016960) DNA polymerase III, beta subunit [Coxiella burnetii RSA
493]
Length = 369
Score = 411 bits (1056), Expect = e-114
Identities = 206/369 (55%), Positives = 277/369 (75%), Gaps = 2/369 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M + RE LLKPLQLV GVVER+QTLP+LSNVLL +E QLS+TGTDLEVEL+G+ L+
Sbjct: 1 MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60
Query: 61 -DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTV 119
++ E +T+P RKLMDIC++LP++ I++ +++K+++++GRSRF LSTLP+ DFP V
Sbjct: 61 KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKEKIILRSGRSRFMLSTLPSEDFPAV 120
Query: 120 EEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAM 179
E L ++ QS R L+ RT FAMAQQDVRYYLNG+LLE LR++ATDGHRLA
Sbjct: 121 ERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPNKLRAIATDGHRLAA 180
Query: 180 CSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVD 239
+L Q ++ R Q+I+PRKGI+EL RLL E + I +G +HI +T +FTFTSKL++
Sbjct: 181 NTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFTSKLIE 240
Query: 240 GKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPE 299
G+FPD ERV+P+GGDK V DR L++A SRTAIL NEK++G+R +L GLL+I A NPE
Sbjct: 241 GRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRILATNPE 300
Query: 300 QEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADN-DDS 358
QE AEEE+ ++Y G NL+IGFNV Y+LD+L V+ + +R S ++SS L++E +N DS
Sbjct: 301 QEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNIRLTFSTADSSVLINEVENPSDS 360
Query: 359 AYVVMPMRL 367
A+VVMPMRL
Sbjct: 361 AFVVMPMRL 369
>gb|AAM39321.1| (AE012093) DNA polymerase III beta chain [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 366
Score = 402 bits (1033), Expect = e-111
Identities = 205/367 (55%), Positives = 270/367 (73%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT+QREA LKPL V VVERRQTLPVL+N+L+ V QLSLTGTDLEVE++ R ++E
Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
DA + GE T+PARKL DI ++LP+ + + K+ V+AGRSRFTL+TLPANDFP+V+
Sbjct: 61 DAQD-GETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFPSVD 119
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
E + ++ ++ L+ L++RT+FAMAQQDVRYYLNG+L ++ G LR VATDGHRLA+C
Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
+ + + Q+IVPRKG+ EL RLL D +V + LG+ HIR G+ TFTSKL+DG
Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
+FPDYE V+P G D+ V DR+ LR + R AILSNEKYRG+R+++S G LKI A+NPEQ
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAHNPEQ 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEA+EE++ + +L IGFNV+YLLD L + E V L D+NSSALV EA ++ S +
Sbjct: 300 EEAQEEIEADTKVDDLAIGFNVNYLLDALSALRDEHVVIQLRDANSSALVREASSEKSRH 359
Query: 361 VVMPMRL 367
VVMP+RL
Sbjct: 360 VVMPLRL 366
>gb|AAL30090.1| (AY057934) DNA polymerase III beta chain [Xanthomonas campestris
pv. campestris]
Length = 366
Score = 400 bits (1028), Expect = e-111
Identities = 204/367 (55%), Positives = 269/367 (73%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT+QREA LKPL V VVERRQTLPVL+N+L+ V QLSLTGTDLEVE++ R ++E
Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
DA + GE T+PARKL DI ++LP+ + + K+ V+AGRSRFTL+TLPANDFP+V+
Sbjct: 61 DAQD-GETTIPARKLFDILRALPDGSRVTVSQTGDKVTVQAGRSRFTLATLPANDFPSVD 119
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
E + ++ ++ L+ L++RT+FAMAQQDVRYYLNG+L ++ G LR VATDGHRL +C
Sbjct: 120 EVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLPLC 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
+ + + Q+IVPRKG+ EL RLL D +V + LG+ HIR G+ TFTSKL+DG
Sbjct: 180 ETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSKLIDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
+FPDYE V+P G D+ V DR+ LR + R AILSNEKYRG+R+++S G LKI A+NPEQ
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAHNPEQ 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEA+EE++ + +L IGFNV+YLLD L + E V L D+NSSALV EA ++ S +
Sbjct: 300 EEAQEEIEADTKVDDLAIGFNVNYLLDALSALRDEHVVIQLRDANSSALVREASSEKSRH 359
Query: 361 VVMPMRL 367
VVMP+RL
Sbjct: 360 VVMPLRL 366
>gb|AAM34894.1| (AE011623) DNA polymerase III beta chain [Xanthomonas axonopodis
pv. citri str. 306]
Length = 366
Score = 400 bits (1028), Expect = e-111
Identities = 205/367 (55%), Positives = 271/367 (73%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT+QREA LKPL V VVERRQTLPVL+N+L+ V+ Q+SLTGTDLEVE++ R ++E
Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
DA + GE T+PARKL DI ++LP+ + I K+ V+AGRSRFTL+TLP+NDFP+V+
Sbjct: 61 DAQD-GETTIPARKLFDILRALPDGSRVTISQTGDKVTVQAGRSRFTLATLPSNDFPSVD 119
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
E + + ++ L+ LI+RT+FAMAQQDVRYYLNG+L ++ G LR VATDGHRLA+C
Sbjct: 120 EVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLRCVATDGHRLALC 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
++ + + Q+IVPRKG+ EL RLL D EV + +G+ HIR G+ TFTSKL+DG
Sbjct: 180 EMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSKLIDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
+FPDYE V+P G D+ V DR+ LR + R AILSNEKYRG+R+++S G LKI A+NPEQ
Sbjct: 240 RFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAHNPEQ 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEA+EE++ + +L IGFNV+YLLD L + E V L D+NSSALV EA ++ S +
Sbjct: 300 EEAQEEIEADTKVDDLAIGFNVNYLLDALSALRDEHVVIQLRDANSSALVREASSEKSRH 359
Query: 361 VVMPMRL 367
VVMP+RL
Sbjct: 360 VVMPLRL 366
>gb|AAL22696.1| (AE008879) DNA polymerase III, beta-subunit [Salmonella typhimurium
LT2]
Length = 366
Score = 399 bits (1025), Expect = e-110
Identities = 206/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E ++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S L+A +PS H VIVPRKG++EL R+L + + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPLEASLPS---HSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAO71178.1| (AE016846) DNA polymerase III beta-subunit [Salmonella enterica
subsp. enterica serovar Typhi Ty2]
Length = 366
Score = 399 bits (1025), Expect = e-110
Identities = 206/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E ++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S L+A +PS H VIVPRKG++EL R+L + + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPLEASLPS---HSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>emb|CAD03158.1| (AL627280) DNA polymerase III beta-subunit [Salmonella enterica
subsp. enterica serovar Typhi]
Length = 366
Score = 399 bits (1025), Expect = e-110
Identities = 206/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E ++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S L+A +PS H VIVPRKG++EL R+L + + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPLEASLPS---HSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAB87631.1| (AF034747) DNA polymerase III beta clamp subunit [Salmonella
typhimurium]
Length = 366
Score = 399 bits (1025), Expect = e-110
Identities = 206/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E ++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S L+A +PS H VIVPRKG++EL R+L + + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPLEASLPS---HSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAN83056.1|AE016769_171 (AE016769) DNA polymerase III, beta chain [Escherichia coli CFT073]
Length = 366
Score = 397 bits (1021), Expect = e-110
Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S + +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAG58898.1|AE005601_4 (AE005601) DNA polymerase III, beta-subunit [Escherichia coli
O157:H7 EDL933]
Length = 366
Score = 397 bits (1021), Expect = e-110
Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S + +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAC76724.1| (AE000447) DNA polymerase III, beta-subunit [Escherichia coli K12]
Length = 366
Score = 397 bits (1021), Expect = e-110
Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S + +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAB59150.1| (J01602) DNA polymerase III beta-subunit [Escherichia coli]
Length = 366
Score = 397 bits (1021), Expect = e-110
Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S + +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAA62052.1| (L10328) DNA polymerase III beta-subunit [Escherichia coli]
Length = 366
Score = 397 bits (1021), Expect = e-110
Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S + +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>dbj|BAB38059.1| (AP002566) DNA polymerase III beta-subunit [Escherichia coli
O157:H7]
Length = 366
Score = 397 bits (1021), Expect = e-110
Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S + +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAP18991.1| (AE016991) DNA polymerase III, beta-subunit [Shigella flexneri 2a
str. 2457T]
Length = 366
Score = 397 bits (1019), Expect = e-110
Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FT++RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E+V RV L
Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 S--LDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S + +PS H VIVPRKG++EL R+L D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS + +A + +
Sbjct: 298 EQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAF93191.1| (AE004093) DNA polymerase III, beta chain [Vibrio cholerae]
Length = 366
Score = 391 bits (1004), Expect = e-108
Identities = 199/368 (54%), Positives = 270/368 (73%), Gaps = 3/368 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FTI+R L+KPLQ V+G + R +LP+L N+LL VE QLS+T TDLEVEL+ RV LE
Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
E G ITVPARK +DIC+ LP+ +I + +E ++ V++GRSRF+L+TLPA+DFP +E
Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLEGDRIQVRSGRSRFSLATLPASDFPNIE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + S+ Q++LR LI++T F+MA QDVRYYLNGML E++G TLRSVATDGHR+A+
Sbjct: 121 DWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVA 180
Query: 181 SLDAQIPSQ-DRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVD 239
AQ+ + + Q+IVPRKG+LEL +LL + V + +G ++RA F FTSKLVD
Sbjct: 181 --QAQLGADFAQKQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTSKLVD 238
Query: 240 GKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPE 299
G+FPDY RVLP+ K + ++LR+AFSR AILSNEK+RG+R+ L++ ++I ANNPE
Sbjct: 239 GRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITANNPE 298
Query: 300 QEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSA 359
QEEAEE + V + G +EIGFNVSY+LDVL + + VR +SD+N+SALV D+D +
Sbjct: 299 QEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDANASALVENVDDDSAM 358
Query: 360 YVVMPMRL 367
YVVMP+RL
Sbjct: 359 YVVMPIRL 366
>dbj|BAC58275.1| (AP005073) DNA polymerase III, beta chain [Vibrio parahaemolyticus]
Length = 366
Score = 390 bits (1003), Expect = e-108
Identities = 196/367 (53%), Positives = 266/367 (72%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FTI+R L+KPLQ V+G + R TLP+L N+L+ VE LS+T TDLEVELV +V LE
Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
E G ITVP+RK +DIC+ LP+D +I +E ++ V++GRSRF+L+TLPANDFP +E
Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + S++Q+ LR LID+T F+MA QDVRYYLNGML E++G TLRSVATDGHR+A+
Sbjct: 121 DWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHRMAVS 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
+ Q+IVPRKG+ EL +L+ + V + +G ++RA F FTSKLVDG
Sbjct: 181 QTQLGADFAQK-QIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
+FPDY RVLP+ +K ++ +LR+AFSR AILSNEK+RG+R+ L+ ++I ANNPEQ
Sbjct: 240 RFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQ 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEAEE + V + G +EIGFNVSY+LDVL + E+V+ +SD+N+SAL+ AD+D + Y
Sbjct: 300 EEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRCEKVQVSMSDANASALIENADDDSAMY 359
Query: 361 VVMPMRL 367
VVMP+RL
Sbjct: 360 VVMPIRL 366
>gb|AAO09487.1|AE016800_92 (AE016800) DNA polymerase III, beta chain [Vibrio vulnificus CMCP6]
Length = 366
Score = 390 bits (1001), Expect = e-108
Identities = 199/369 (53%), Positives = 263/369 (71%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FTI R +KPLQ V+G + R TLP+L N+L+ VE QLS+T TDLEVEL+ +V LE
Sbjct: 1 MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
E G ITVP+RK +DIC+ LP+D +I +E ++ V++GRSRF+L+TLPANDFP +E
Sbjct: 61 GEFEAGSITVPSRKFIDICRGLPDDAVITFVLEGDRVQVRSGRSRFSLATLPANDFPNIE 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAM- 179
+ + S+ Q +LR LI++T F+MA QDVRYYLNGML E+ G TLRSVATDGHR+A+
Sbjct: 121 DWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIEGSTLRSVATDGHRMAVA 180
Query: 180 -CSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
+L A + Q+IVPRKG+ EL +LL + V + +G ++RA F FTSKLV
Sbjct: 181 QAALSADFAQK---QIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ K + +LR+AFSR AILSNEK+RG+R+ L+ ++I ANNP
Sbjct: 238 DGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V + G +EIGFNVSY+LDVL + EQVR +SD+N+SALV D+D +
Sbjct: 298 EQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRCEQVRISMSDANASALVENVDDDSA 357
Query: 359 AYVVMPMRL 367
YVVMP+RL
Sbjct: 358 MYVVMPIRL 366
>gb|AAA83959.1| (M58352) DNA polymerase III beta subunit [Proteus mirabilis]
Length = 367
Score = 385 bits (990), Expect = e-106
Identities = 204/369 (55%), Positives = 265/369 (71%), Gaps = 4/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F I+RE LLKPLQ V+G + R TLP+L N+LL V LSLTGTDLE+E++ RV L
Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
+ E G TVPARK DI + LP I + ++ +LLV++GRSRF+LSTLPA+DFP ++
Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISVELDGDRLLVRSGRSRFSLSTLPASDFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ L+RLI+ T F+MA QDVRYYLNGML E LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVC 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGE--VGIVLGQHHIRATTGEFTFTSKLV 238
++D S H VIVPRKG++EL RLL + GE + + +G +++RA G+F FTSKLV
Sbjct: 181 AMDIG-QSLPGHSVIVPRKGVIELMRLL-DGSGESLLQLQIGSNNLRAHVGDFIFTSKLV 238
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ K V+ L++AFSR AILSNEK+RG+R+ L+NG LKI ANNP
Sbjct: 239 DGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKITANNP 298
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE V V+Y G +EIGFNVSYLLDVL + E+V+ +L+D+ SS V + +
Sbjct: 299 EQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEVKLLLTDAVSSVQVENVASAAA 358
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 359 AYVVMPMRL 367
>gb|AAM87654.1|AE014012_11 (AE014012) DNA polymerase III, beta-subunit [Yersinia pestis KIM]
Length = 366
Score = 385 bits (989), Expect = e-106
Identities = 203/369 (55%), Positives = 262/369 (71%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F I+RE LLKPLQ V+ + R TLP+L N+LL V L LTGTDLE+E+V V L
Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
+ EPG TVPARK DI + LP I + ++ +LLV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QSHEPGATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAIDFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ L+RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 SLDA--QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S+ +PS H VIVPRKG++EL RLL D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQTLPS---HSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK++ L++AFSR AILSNEK+RG+RL +S+ LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y G +EIGFNVSY+LDVL + E VR +L+DS SS + ++ + +
Sbjct: 298 EQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCEDVRLLLTDSVSSVQIEDSASQAA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>emb|CAC93546.1| (AJ414160) DNA polymerase III, beta subunit protein [Yersinia
pestis CO92]
Length = 366
Score = 385 bits (989), Expect = e-106
Identities = 203/369 (55%), Positives = 262/369 (71%), Gaps = 5/369 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F I+RE LLKPLQ V+ + R TLP+L N+LL V L LTGTDLE+E+V V L
Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
+ EPG TVPARK DI + LP I + ++ +LLV++GRSRF+LSTLPA DFP ++
Sbjct: 61 QSHEPGATTVPARKFFDIWRGLPEGAEITVALDGDRLLVRSGRSRFSLSTLPAIDFPNLD 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + F++ Q+ L+RLI+ T F+MA QDVRYYLNGML E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVC 180
Query: 181 SLDA--QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLV 238
S+ +PS H VIVPRKG++EL RLL D + + +G ++IRA G+F FTSKLV
Sbjct: 181 SMPIGQTLPS---HSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTSKLV 237
Query: 239 DGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNP 298
DG+FPDY RVLP+ DK++ L++AFSR AILSNEK+RG+RL +S+ LKI ANNP
Sbjct: 238 DGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITANNP 297
Query: 299 EQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDS 358
EQEEAEE + V Y G +EIGFNVSY+LDVL + E VR +L+DS SS + ++ + +
Sbjct: 298 EQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCEDVRLLLTDSVSSVQIEDSASQAA 357
Query: 359 AYVVMPMRL 367
AYVVMPMRL
Sbjct: 358 AYVVMPMRL 366
>gb|AAP95741.1| (AE017153) DNA polymerase III beta chain [Haemophilus ducreyi
35000HP]
Length = 367
Score = 380 bits (976), Expect = e-105
Identities = 194/368 (52%), Positives = 260/368 (70%), Gaps = 2/368 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M TI RE LLKPLQ V GV+ R TLPV++N+LL + G +LSLTGTDLEVEL + LE
Sbjct: 1 MQLTITREQLLKPLQQVCGVLSSRPTLPVINNILLDINGSRLSLTGTDLEVELTTQAELE 60
Query: 61 DAAE-PGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTV 119
A + G+ T+PA+K +DIC+SLP + LI I+ E+ + L++A RS+F L+TLPA+D+P +
Sbjct: 61 QAVDFSGKFTLPAKKWLDICRSLPENSLISIQFEQDRALIRADRSKFNLATLPASDYPNL 120
Query: 120 EEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAM 179
+ ++FS+ QS L RLID T F+MA QD RY+LNGM E G LR+VATDGHRLA+
Sbjct: 121 MDWKPEVDFSMEQSTLSRLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRLAV 180
Query: 180 CSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVD 239
C++ A H VIVPRK +LEL+R+L+ V + +G +++R + FTSKL+D
Sbjct: 181 CTM-ALSQELTTHSVIVPRKAVLELSRILSMTADPVRLEIGTNNLRISMNGVVFTSKLID 239
Query: 240 GKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPE 299
G+FPDY RVLPR D+++ + + L+ A R AILSNEK+ G+RL LS +LKI ANNPE
Sbjct: 240 GRFPDYRRVLPRNADRILEAETEMLKRALMRAAILSNEKFHGVRLALSENMLKITANNPE 299
Query: 300 QEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSA 359
QEEAEE + V Y +EIGFNVSYLLDVL + E+VRF L D++SS L+ + +N +
Sbjct: 300 QEEAEEIIDVAYQNTAMEIGFNVSYLLDVLNTLKCERVRFNLVDASSSCLIEDCENSTAE 359
Query: 360 YVVMPMRL 367
YV+MPMRL
Sbjct: 360 YVIMPMRL 367
>gb|AAF82815.1|AE003855_2 (AE003855) DNA polymerase III, beta chain [Xylella fastidiosa 9a5c]
Length = 366
Score = 374 bits (959), Expect = e-103
Identities = 190/367 (51%), Positives = 264/367 (71%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F +QRE LKPL V VVERRQT +L+N+L+ V QLSLTGTDLEVE++ + ++E
Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
DA E GEIT+PARK+ +I ++LP+ + + + K+ ++AGRSRFTL+TLPANDFP+++
Sbjct: 61 DA-ESGEITIPARKIYEIVRALPDSSQLSVYQSDDKITLQAGRSRFTLATLPANDFPSID 119
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + I + L+ LI+RT+FAMAQQDVRYYLNG+L ++ LR VATDGHRLA+C
Sbjct: 120 KIEVTERIIIPEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALC 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
+ + + Q+I+PRKG++EL RLL D ++ + + ++HIR + + TFTSKL+DG
Sbjct: 180 ETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
FPDYE V+P G D+ V R+ LR+A R AILSNEKYRG+R+++S G LKI A+NPEQ
Sbjct: 240 SFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAHNPEQ 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEA+EE++ + L IGFNV+YLLD L + + V L DSNSSAL+ E++++ S
Sbjct: 300 EEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRGDFVNIQLRDSNSSALIRESNSEKSLQ 359
Query: 361 VVMPMRL 367
VVMP+RL
Sbjct: 360 VVMPLRL 366
>gb|AAO27910.1| (AE012553) DNA polymerase III beta chain [Xylella fastidiosa
Temecula1]
Length = 366
Score = 371 bits (952), Expect = e-102
Identities = 190/367 (51%), Positives = 263/367 (71%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F +QRE LKPL V VVERRQT +L+N+L+ V QLSLTGTDLEVE++ + +E
Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
D E GEIT+PARK+ +I ++LP+ + + + K+ ++AGRSRFTL+TLPANDFP+++
Sbjct: 61 DP-ESGEITIPARKIYEIVRALPDASQLSVYQSDDKITLQAGRSRFTLATLPANDFPSID 119
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ + IA+ L+ LI+RT+FAMAQQDVRYYLNG+L ++ LR VATDGHRLA+C
Sbjct: 120 KIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLRDTKLRCVATDGHRLALC 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
+ + + Q+I+PRKG++EL RLL D ++ + + ++HIR + + TFTSKL+DG
Sbjct: 180 ETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
FPDYE V+P G D+ V R+ LR+A R AILSNEKYRG+R+++S G LKI A+NPEQ
Sbjct: 240 SFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAHNPEQ 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEA+EE++ + L IGFNV+YLLD L + + V L DSNSSAL+ E++++ S
Sbjct: 300 EEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRGDFVNIQLRDSNSSALIRESNSEKSLQ 359
Query: 361 VVMPMRL 367
VVMP+RL
Sbjct: 360 VVMPLRL 366
>gb|AAK03244.1| (AE006156) DnaN [Pasteurella multocida]
Length = 366
Score = 370 bits (950), Expect = e-102
Identities = 185/367 (50%), Positives = 252/367 (68%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F + RE LLKPLQ V GV+ R +PVL+NVLL + G++L +TGTDLEVEL L
Sbjct: 1 MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQIRGERLVITGTDLEVELSTETALL 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
G T+PA+K +DIC+SLP + I + EE + +VK+GRS+F LSTLPA ++P +
Sbjct: 61 RTDVQGSFTIPAKKFLDICRSLPEEAEISVSFEEDRAIVKSGRSKFNLSTLPAEEYPNLT 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ ++F++ QS LRRLI+ T F+MA QD RY+LNGM E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVDFTLEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRLAVC 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
++ + Q H VI+PRKG+LEL RLL D + +G +++R G FTSKL+DG
Sbjct: 181 TIALEQDLQ-THSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIDLGNIIFTSKLIDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
+FPDY RVLPR +++ + L++AF R AILSNE++R +RLQLS LKI A NPEQ
Sbjct: 240 RFPDYRRVLPRNATRILEAEWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITATNPEQ 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
E AEE + V Y G +E+GFNVSY+LDVL + ++VR L+D++SS L+ + D+ + Y
Sbjct: 300 EVAEEIIDVSYVGEEMEVGFNVSYILDVLNALKCQRVRMRLTDASSSCLIEDCDDASAEY 359
Query: 361 VVMPMRL 367
V+MPMRL
Sbjct: 360 VIMPMRL 366
>gb|AAC22654.1| (U32780) DNA polymerase III, beta subunit (dnaN) [Haemophilus
influenzae Rd]
Length = 366
Score = 368 bits (944), Expect = e-101
Identities = 184/367 (50%), Positives = 253/367 (68%), Gaps = 1/367 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M F+I RE LLKPLQ V GV+ R +PVL+NVLL +E +L++TGTDLEVEL + L
Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQLS 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
++E G T+PA+K +DIC++L +D I + E+ + LV++GRSRFTL+T PA ++P +
Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRALVQSGRSRFTLATQPAEEYPNLT 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
+ ++F + Q+ LRRLI+ T F+MA QD RY+LNGM E G LR+VATDGHRLA+C
Sbjct: 121 DWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRLAVC 180
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
++ + Q+ H VI+PRKG+LEL RLL D + +G +++R FTSKL+DG
Sbjct: 181 TISLEQELQN-HSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTSKLIDG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
+FPDY RVLPR K+V G+ + L++AF+R +ILSNE+ R +RL L LKI A+N E
Sbjct: 240 RFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLSLKENQLKITASNTEH 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEAEE V V YNG LE+GFNV+Y+LDVL + QVR L+D+ SS L+ ++ Y
Sbjct: 300 EEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCNQVRMCLTDAFSSCLIENCEDSSCEY 359
Query: 361 VVMPMRL 367
V+MPMRL
Sbjct: 360 VIMPMRL 366
>gb|AAN45206.1|AE015383_6 (AE015383) DNA polymerase III, beta-subunit [Shigella flexneri 2a
str. 301]
Length = 316
Score = 342 bits (876), Expect = 3e-93
Identities = 174/319 (54%), Positives = 230/319 (72%), Gaps = 5/319 (1%)
Query: 51 VELVGRVVLEDAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLST 110
+E+V RV L EPG TVPARK DIC+ LP I +++E +++LV++GRSRF+LST
Sbjct: 1 MEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLST 60
Query: 111 LPANDFPTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSV 170
LPA DFP +++ + F++ Q+ ++RLI+ T F+MA QDVRYYLNGML E G LR+V
Sbjct: 61 LPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTV 120
Query: 171 ATDGHRLAMCSLDA--QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATT 228
ATDGHRLA+CS+ +PS H VIVPRKG++EL R+L D + + +G ++IRA
Sbjct: 121 ATDGHRLAVCSMPIGQSLPS---HSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHV 177
Query: 229 GEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSN 288
G+F FTSKLVDG+FPDY RVLP+ DK + L++AF+R AILSNEK+RG+RL +S
Sbjct: 178 GDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSE 237
Query: 289 GLLKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSA 348
LKI ANNPEQEEAEE + V Y+G +EIGFNVSY+LDVL + E VR +L+DS SS
Sbjct: 238 NQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSV 297
Query: 349 LVHEADNDDSAYVVMPMRL 367
+ +A + +AYVVMPMRL
Sbjct: 298 QIEDAASQSAAYVVMPMRL 316
>emb|CAB83846.1| (AL162753) putative DNA polymerase III, beta subunit [Neisseria
meningitidis Z2491]
Length = 367
Score = 318 bits (815), Expect = 3e-86
Identities = 167/365 (45%), Positives = 237/365 (64%), Gaps = 7/365 (1%)
Query: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEP 65
+R++LLKPLQ V G+VERR TLP+LSNVL+ +G Q L TDLE++ + E A+
Sbjct: 7 ERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQ-IDTAGPEGGADD 65
Query: 66 GEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPG- 124
IT A+K DI ++LP L+ + ++ +L +KAG+SRF L TLPA DFP + G
Sbjct: 66 FRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMNVGEDI 125
Query: 125 SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAM--CSL 182
S FS+ Q + + ++ + ++MA QD+RYYLNG+L++V G LR VATDGHRLA C++
Sbjct: 126 SATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAYAACAI 185
Query: 183 DAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKF 242
DA +P R +VI+PRK +LEL +LL D + I L +R T SK++DGKF
Sbjct: 186 DADLP---RAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGKF 242
Query: 243 PDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEE 302
PD+ RV+P DK+ V R +L A R +IL+NEK+RG RL L +GLL + +N EQEE
Sbjct: 243 PDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNNEQEE 302
Query: 303 AEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVV 362
A EE+++ Y GG LE+GFN+ YL+DVL I ++ ++ D+N S L +N + Y+V
Sbjct: 303 AREEIEIAYQGGELEVGFNIGYLMDVLRNIHSDDMQLAFGDANRSTLFTVPNNPNFKYIV 362
Query: 363 MPMRL 367
MPMR+
Sbjct: 363 MPMRI 367
>emb|CAD16938.1| (AL646075) PROBABLE DNA POLYMERASE III (BETA CHAIN) PROTEIN
[Ralstonia solanacearum]
Length = 371
Score = 318 bits (814), Expect = 4e-86
Identities = 169/367 (46%), Positives = 248/367 (67%), Gaps = 9/367 (2%)
Query: 7 REALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPG 66
R+ LL+PLQ+V+G+VERR TLP+L+N+L+ G+++S TD+E+++ + A G
Sbjct: 8 RDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHA--DCGAGNG 65
Query: 67 EI--TVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPG 124
+I TV ARKL+DI +++P D + + + ++++ V++G+SRF L TL A +FPTV E
Sbjct: 66 DIATTVAARKLVDILRAMP-DGEVALTLNDKRMSVQSGKSRFALQTLAAEEFPTVAEAND 124
Query: 125 -SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLD 183
++ Q L+ L+ FAMAQQD+RYYLNGMLL V+G + +VATDGHRLA C ++
Sbjct: 125 FGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGKQVMAVATDGHRLAYCGVE 184
Query: 184 A---QIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
+ RH+VI+PRK ILEL RLL + D V + L + ++ T G SKLV+G
Sbjct: 185 TGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGNIELISKLVEG 244
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
KFPD++RV+P+G DR L++A RTAIL+ +K++G+R L +LKI + N +Q
Sbjct: 245 KFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNVLKISSTNADQ 304
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
EEA+EE++++Y G L+IGFNV+YLLDVL + E+V+ L DSNSSAL+ D+D Y
Sbjct: 305 EEAQEELEIDYQGDALDIGFNVTYLLDVLANLKAEKVQVSLGDSNSSALITLPDDDTFKY 364
Query: 361 VVMPMRL 367
VVMPMR+
Sbjct: 365 VVMPMRI 371
>gb|AAF42232.1| (AE002539) DNA polymerase III, beta subunit [Neisseria meningitidis
MC58]
Length = 367
Score = 315 bits (808), Expect = 2e-85
Identities = 167/365 (45%), Positives = 235/365 (64%), Gaps = 7/365 (1%)
Query: 6 QREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEP 65
+R++LLKPLQ V G+VERR TLP+LSNVL+ +G Q L TDLE++ + E A
Sbjct: 7 ERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQ-IDTAGPEGGAGD 65
Query: 66 GEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPG- 124
IT A+K DI ++LP L+ + ++ +L +KAG+SRF L TLPA DFP + G
Sbjct: 66 FRITTNAKKFQDILRALPAGALVSLDWDDSRLTLKAGKSRFALQTLPAADFPMMNVGEDI 125
Query: 125 SLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAM--CSL 182
S FS+ Q + + ++ + ++MA QD+RYYLNG+L++V G LR VATDGHRLA C++
Sbjct: 126 SATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRLVATDGHRLAYAACAI 185
Query: 183 DAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKF 242
DA +P R +VI+PRK +LEL +LL D + I L +R T SK++DGKF
Sbjct: 186 DADLP---RAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGKF 242
Query: 243 PDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEE 302
PD+ RV+P DK+ V R +L A R +IL+NEK+RG RL L GLL + +N EQEE
Sbjct: 243 PDFNRVIPLDNDKIFVLSRAELLGALERASILANEKFRGARLFLQPGLLSVVCSNNEQEE 302
Query: 303 AEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVV 362
A EE+++ Y GG LE+GFN+ YL+DVL I ++ ++ D+N S L +N + Y+V
Sbjct: 303 AREEIEIAYQGGELEVGFNIGYLMDVLRNIHSDDMQLAFGDANRSTLFTVPNNPNFKYIV 362
Query: 363 MPMRL 367
MPMR+
Sbjct: 363 MPMRI 367
>emb|CAE39679.1| (BX640436) DNA polymerase iii, beta chain [Bordetella
parapertussis]
Length = 371
Score = 313 bits (801), Expect = 1e-84
Identities = 168/363 (46%), Positives = 242/363 (66%), Gaps = 3/363 (0%)
Query: 7 REALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPG 66
R+ALLKPL VAG+VERR TLP+L+N+L+ EG +++ TDLEV++ E
Sbjct: 10 RDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVGPENE 69
Query: 67 EITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPG-S 125
TV ARKL+DI K+LP+ + + + KL V++ +SRF L TL A++FPTV +
Sbjct: 70 STTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPTVAQPEQWD 129
Query: 126 LNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQ 185
++ S+ Q LR L + FAMAQQD+RYYLNGMLL G +R+VATDGHRLA C+ +A
Sbjct: 130 VSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRLAHCATEAD 189
Query: 186 IPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDY 245
+RH+VIVPRK +LE+ RLL + D V + + IR G+ SKLV+GKFPD+
Sbjct: 190 -GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKLVEGKFPDF 248
Query: 246 ERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEEAEE 305
RV+P + R+ L+ + R AIL+ +K++G+RLQL+ +KI ++N EQEEA+E
Sbjct: 249 TRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKISSSNAEQEEAQE 308
Query: 306 EVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRF-ILSDSNSSALVHEADNDDSAYVVMP 364
E+ ++Y+ L++GFNVSYLLDVL I E V++ ++ D+N+SAL+ +D++ YVVMP
Sbjct: 309 EIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWSVMPDANASALITLSDDEQFKYVVMP 368
Query: 365 MRL 367
MR+
Sbjct: 369 MRI 371
>emb|CAE44819.1| (BX640412) DNA polymerase iii, beta chain [Bordetella pertussis]
Length = 369
Score = 312 bits (799), Expect = 2e-84
Identities = 168/363 (46%), Positives = 241/363 (66%), Gaps = 3/363 (0%)
Query: 7 REALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPG 66
R+ALLKPL VAG+VERR TLP+L+N+L+ EG +++ TDLEV++ E
Sbjct: 8 RDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVGPENE 67
Query: 67 EITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPG-S 125
TV ARKL+DI K+LP+ + + + KL V++ +SRF L TL A++FPTV +
Sbjct: 68 STTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPTVAQPEQWD 127
Query: 126 LNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQ 185
++ S+ Q LR L + FAMAQQD+RYYLNGMLL G +R+VATDGHRLA C+ +A
Sbjct: 128 VSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRLAHCATEAD 187
Query: 186 IPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDY 245
+RH+VIVPRK +LE+ RLL + D V + + IR G+ SKLV+GKFPD+
Sbjct: 188 -GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKLVEGKFPDF 246
Query: 246 ERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEEAEE 305
RV+P + R+ L+ + R AIL+ +K++G+RLQL+ +KI ++N EQEEA+E
Sbjct: 247 TRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKISSSNAEQEEAQE 306
Query: 306 EVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRF-ILSDSNSSALVHEADNDDSAYVVMP 364
E+ ++Y+ L++GFNVSYLLDVL I E V++ ++ D+N+SAL+ D++ YVVMP
Sbjct: 307 EIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWSVMPDANASALITLPDDEQFKYVVMP 366
Query: 365 MRL 367
MR+
Sbjct: 367 MRI 369
>emb|CAE35352.1| (BX640452) DNA polymerase iii, beta chain [Bordetella
bronchiseptica]
Length = 371
Score = 312 bits (799), Expect = 2e-84
Identities = 168/363 (46%), Positives = 241/363 (66%), Gaps = 3/363 (0%)
Query: 7 REALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPG 66
R+ALLKPL VAG+VERR TLP+L+N+L+ EG +++ TDLEV++ E
Sbjct: 10 RDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVGPENE 69
Query: 67 EITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVEEGPG-S 125
TV ARKL+DI K+LP+ + + + KL V++ +SRF L TL A++FPTV +
Sbjct: 70 STTVAARKLLDILKALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPTVAQPEQWD 129
Query: 126 LNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQ 185
++ S+ Q LR L + FAMAQQD+RYYLNGMLL G +R+VATDGHRLA C+ +A
Sbjct: 130 VSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPGRVRAVATDGHRLAHCATEAD 189
Query: 186 IPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDY 245
+RH+VIVPRK +LE+ RLL + D V + + IR G+ SKLV+GKFPD+
Sbjct: 190 -GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKLVEGKFPDF 248
Query: 246 ERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEEAEE 305
RV+P + R+ L+ + R AIL+ +K++G+RLQL+ +KI ++N EQEEA+E
Sbjct: 249 TRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKISSSNAEQEEAQE 308
Query: 306 EVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRF-ILSDSNSSALVHEADNDDSAYVVMP 364
E+ ++Y+ L++GFNVSYLLDVL I E V++ ++ D+N+SAL+ D++ YVVMP
Sbjct: 309 EIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWSVMPDANASALITLPDDEQFKYVVMP 368
Query: 365 MRL 367
MR+
Sbjct: 369 MRI 371
>dbj|BAC46094.1| (AP005937) DNA polymerase III beta chain [Bradyrhizobium japonicum
USDA 110]
Length = 372
Score = 289 bits (740), Expect = 2e-77
Identities = 164/373 (43%), Positives = 224/373 (60%), Gaps = 7/373 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M T++R LLK L V VVERR T+P+L NVL+ E +LSL TDL++E+ + E
Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLPAE 60
Query: 61 DAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPT 118
A G TVPA DI + LP+ ++++ + L ++AGRSRFTL TLP NDFP
Sbjct: 61 TATA-GSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAVLAIRAGRSRFTLQTLPENDFPD 119
Query: 119 VEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNG----GTLRSVATDG 174
+ G S +FS+A ++RLIDRT FA++ ++ RYYLNG+ L G TLR VATDG
Sbjct: 120 LAAGDMSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRGVATDG 179
Query: 175 HRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFT 234
HRLA L + VIVPRK + E+ RL+ + + E+ I L Q IR T G T
Sbjct: 180 HRLAQLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVVLT 239
Query: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQ 294
SKL+DG FPDY RV+P+G DK +V D++ A R + +S+E+ R ++L LS G L +
Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPGKLVLS 299
Query: 295 ANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEAD 354
NP+ A EE++VEY L+IGFN YLLD+ I E L+D S LV + D
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEVATLRLADPGSPTLVQDRD 359
Query: 355 NDDSAYVVMPMRL 367
+ + YV+MPMR+
Sbjct: 360 DKSALYVLMPMRV 372
>gb|AAL53123.1| (AE009627) DNA POLYMERASE III, BETA CHAIN [Brucella melitensis 16M]
Length = 397
Score = 278 bits (711), Expect = 4e-74
Identities = 153/373 (41%), Positives = 224/373 (60%), Gaps = 7/373 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M T++R LLK L V VVERR T+P+LSNVLL EG L++ TDL++E V
Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLE-VNEATAA 84
Query: 61 DAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPT 118
+ G TVPA L DI + LP+ +V++ + + V +G+S F L LP +DFP
Sbjct: 85 MVEQAGATTVPAHLLYDIVRKLPDGAEVMLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144
Query: 119 VEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGML---LEVNGGT-LRSVATDG 174
+ G + +F I L+RLIDRT FA++ ++ RYYLNG+ +E +G LR+VATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204
Query: 175 HRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFT 234
HRLA L+A ++ +I+PRK + EL +L+ D V + L IR T G T
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264
Query: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQ 294
SKL+DG FPDY+RV+P G DK + DRQ + R + +S+E+ R ++L +++G L +
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324
Query: 295 ANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEAD 354
NNP+ A +E+ +Y+G L+IGFN YLLD+ G + F+L+D+ S LV +
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTDAVFMLADAGSPTLVRDTG 384
Query: 355 NDDSAYVVMPMRL 367
++D YV+MPMR+
Sbjct: 385 DEDVLYVLMPMRV 397
>gb|AAN28960.1|AE014315_2 (AE014315) DNA polymerase III, beta subunit [Brucella suis 1330]
Length = 397
Score = 278 bits (711), Expect = 4e-74
Identities = 153/373 (41%), Positives = 224/373 (60%), Gaps = 7/373 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M T++R LLK L V VVERR T+P+LSNVLL EG L++ TDL++E V
Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLE-VNEATAA 84
Query: 61 DAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPT 118
+ G TVPA L DI + LP+ +V++ + + V +G+S F L LP +DFP
Sbjct: 85 MVEQAGATTVPAHLLYDIVRKLPDGAEVMLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144
Query: 119 VEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGML---LEVNGGT-LRSVATDG 174
+ G + +F I L+RLIDRT FA++ ++ RYYLNG+ +E +G LR+VATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204
Query: 175 HRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFT 234
HRLA L+A ++ +I+PRK + EL +L+ D V + L IR T G T
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264
Query: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQ 294
SKL+DG FPDY+RV+P G DK + DRQ + R + +S+E+ R ++L +++G L +
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324
Query: 295 ANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEAD 354
NNP+ A +E+ +Y+G L+IGFN YLLD+ G + F+L+D+ S LV +
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTDAVFMLADAGSPTLVRDTG 384
Query: 355 NDDSAYVVMPMRL 367
++D YV+MPMR+
Sbjct: 385 DEDVLYVLMPMRV 397
>gb|AAL41323.1| (AE009001) DNA polymerase III, beta chain [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 372
Score = 277 bits (709), Expect = 6e-74
Identities = 157/375 (41%), Positives = 224/375 (59%), Gaps = 11/375 (2%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRV--V 58
M T++R LLK L V VVERR T+P+LSNVLL G L + TDL++E+ +
Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 60
Query: 59 LEDAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDF 116
+E A G TVPA L +I + LP+ +VL+ + + V +GRS+F+L LP DF
Sbjct: 61 VEQA---GATTVPAHLLYEIVRKLPDGSEVLLATNPDGSSMTVASGRSKFSLQCLPEADF 117
Query: 117 PTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGML---LEVNGGT-LRSVAT 172
P + G S F + + L+ LIDRT FA++ ++ RYYLNG+ +E NG LR+VAT
Sbjct: 118 PDLTAGTFSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVAT 177
Query: 173 DGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFT 232
DGHRLA +DA S+ +I+PRK + EL +L+ + EV + + IR G
Sbjct: 178 DGHRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVV 237
Query: 233 FTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLK 292
TSKL+DG FPDY+RV+P G DK + D Q A R + +S+E+ R ++L L++G L
Sbjct: 238 LTSKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLT 297
Query: 293 IQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHE 352
+ NNP+ A EEV V Y+ ++EIGFN YLLD+ + E F+L+D+ S LV +
Sbjct: 298 LTVNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSGEDAIFLLADAGSPTLVRD 357
Query: 353 ADNDDSAYVVMPMRL 367
DD+ YV+MPMR+
Sbjct: 358 TAGDDALYVLMPMRV 372
>gb|AAK86116.1| (AE007968) AGR_C_520p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 403
Score = 277 bits (709), Expect = 6e-74
Identities = 157/375 (41%), Positives = 224/375 (59%), Gaps = 11/375 (2%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRV--V 58
M T++R LLK L V VVERR T+P+LSNVLL G L + TDL++E+ +
Sbjct: 32 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 91
Query: 59 LEDAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDF 116
+E A G TVPA L +I + LP+ +VL+ + + V +GRS+F+L LP DF
Sbjct: 92 VEQA---GATTVPAHLLYEIVRKLPDGSEVLLATNPDGSSMTVASGRSKFSLQCLPEADF 148
Query: 117 PTVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGML---LEVNGGT-LRSVAT 172
P + G S F + + L+ LIDRT FA++ ++ RYYLNG+ +E NG LR+VAT
Sbjct: 149 PDLTAGTFSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVAT 208
Query: 173 DGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFT 232
DGHRLA +DA S+ +I+PRK + EL +L+ + EV + + IR G
Sbjct: 209 DGHRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVV 268
Query: 233 FTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLK 292
TSKL+DG FPDY+RV+P G DK + D Q A R + +S+E+ R ++L L++G L
Sbjct: 269 LTSKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLT 328
Query: 293 IQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHE 352
+ NNP+ A EEV V Y+ ++EIGFN YLLD+ + E F+L+D+ S LV +
Sbjct: 329 LTVNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSGEDAIFLLADAGSPTLVRD 388
Query: 353 ADNDDSAYVVMPMRL 367
DD+ YV+MPMR+
Sbjct: 389 TAGDDALYVLMPMRV 403
>emb|CAC41772.1| (AL591783) PROBABLE DNA POLYMERASE III, BETA CHAIN PROTEIN
[Sinorhizobium meliloti]
Length = 372
Score = 273 bits (698), Expect = 1e-72
Identities = 154/373 (41%), Positives = 221/373 (59%), Gaps = 7/373 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M T++R LLK L V VVERR T+P+LSNVLL +G L + TDL++E+ +
Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60
Query: 61 DAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPT 118
+ G TVPA L DI + LP+ +V + E + V +GRS+F+L LP +DFP
Sbjct: 61 -VEQAGATTVPAHLLYDIVRKLPDGSEVRLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119
Query: 119 VEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLL---EVNGGT-LRSVATDG 174
+ G S +F + L+ LIDRT FA++ ++ RYYLNG+ + E NG LR+VATDG
Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179
Query: 175 HRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFT 234
HRLA ++A S+ +I+PRK + EL +LL D V + + IR T G T
Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239
Query: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQ 294
SKL+DG FPDY+RV+P DK + D Q +A R + +S+E+ R ++L L++G + +
Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299
Query: 295 ANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEAD 354
NNP+ A EE+ V Y LEIGFN YLLD+ G + + F+L+D S LV +
Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDITGQLTGGEAVFLLADPGSPTLVRDLA 359
Query: 355 NDDSAYVVMPMRL 367
+D+ YV+MPMR+
Sbjct: 360 AEDALYVLMPMRV 372
>dbj|BAB52002.1| (AP003007) DNA polymerase III beta subunit [Mesorhizobium loti]
Length = 372
Score = 273 bits (698), Expect = 1e-72
Identities = 152/373 (40%), Positives = 219/373 (58%), Gaps = 7/373 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M ++R LLK L V VVERR T+P+LSNVLL EG L + TDL++E V
Sbjct: 1 MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLSAEGASLEMKATDLDLE-VTEATPA 59
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ--KLLVKAGRSRFTLSTLPANDFPT 118
G TVPA L DI + L + + ++ +E + V +GRS F L LP +DFP
Sbjct: 60 KVERGGATTVPAHLLYDIVRKLSDGAEVMLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119
Query: 119 VEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVN--GGTL--RSVATDG 174
+ G S F + L+ LI++T FA++ ++ RYYLNG+ L + GG L RSVATDG
Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179
Query: 175 HRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFT 234
HRLA +DA S+ +I+PRK + EL +L+ + D V L IR T G T
Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239
Query: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQ 294
SKL+DG FPDY+RV+P G DK ++ DRQ A R + +S+E+ R ++L +S G + +
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLILDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299
Query: 295 ANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEAD 354
NNP+ A EE+ +Y+ +EIGFN YLLDV + + +F+L+D+ S L+H+
Sbjct: 300 VNNPDSGSATEELAADYSSDPIEIGFNAKYLLDVAAQLTGTEAKFMLADAGSPTLIHDMA 359
Query: 355 NDDSAYVVMPMRL 367
++ + YV+MPMR+
Sbjct: 360 DETALYVLMPMRV 372
>gb|AAK22143.1| (AE005689) DNA polymerase III, beta subunit [Caulobacter crescentus
CB15]
Length = 372
Score = 266 bits (681), Expect = 1e-70
Identities = 155/373 (41%), Positives = 219/373 (58%), Gaps = 7/373 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M TI+R ALLK L V VVERR T+P+LSN+LL EG +LS + TDL++E++ +
Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDEGFAQ 60
Query: 61 DAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPT 118
PG+IT PA L +I + LP+ DV + ++ +L+++AGRSRF L LPA DFP
Sbjct: 61 IDV-PGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPV 119
Query: 119 VEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLE-VNGG---TLRSVATDG 174
+ S ++ ++L RLID+T FA++ ++ RYYLNG+ + VN G LR+VATDG
Sbjct: 120 MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATDG 179
Query: 175 HRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFT 234
HRLA+ + A + VIVPRK I E RL+ V + + +R G T
Sbjct: 180 HRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALT 239
Query: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQ 294
SK++DG FPDY RV+PR K++ D +A R A +S EK R ++L + G + +
Sbjct: 240 SKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299
Query: 295 ANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEAD 354
N E +A EEV+V+Y+G EIGFN YLLDV G I Q F +D S LV +
Sbjct: 300 VRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPV 359
Query: 355 NDDSAYVVMPMRL 367
+ YV+MP+R+
Sbjct: 360 DPGVKYVLMPLRV 372
>gb|AAB51448.1| (U37793) DNA polymerase III beta subunit [Caulobacter vibrioides]
Length = 372
Score = 266 bits (681), Expect = 1e-70
Identities = 155/373 (41%), Positives = 219/373 (58%), Gaps = 7/373 (1%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M TI+R ALLK L V VVERR T+P+LSN+LL EG +LS + TDL++E++ +
Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDEGFAQ 60
Query: 61 DAAEPGEITVPARKLMDICKSLPN--DVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPT 118
PG+IT PA L +I + LP+ DV + ++ +L+++AGRSRF L LPA DFP
Sbjct: 61 IDV-PGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAGDFPV 119
Query: 119 VEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLE-VNGG---TLRSVATDG 174
+ S ++ ++L RLID+T FA++ ++ RYYLNG+ + VN G LR+VATDG
Sbjct: 120 MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATDG 179
Query: 175 HRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFT 234
HRLA+ + A + VIVPRK I E RL+ V + + +R G T
Sbjct: 180 HRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALT 239
Query: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQ 294
SK++DG FPDY RV+PR K++ D +A R A +S EK R ++L + G + +
Sbjct: 240 SKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299
Query: 295 ANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEAD 354
N E +A EEV+V+Y+G EIGFN YLLDV G I Q F +D S LV +
Sbjct: 300 VRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAEFRFADPASPTLVVDPV 359
Query: 355 NDDSAYVVMPMRL 367
+ YV+MP+R+
Sbjct: 360 DPGVKYVLMPLRV 372
>gb|AAM67583.1| (AE014077) DNA polymerase III beta chain [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 366
Score = 257 bits (657), Expect = 7e-68
Identities = 136/366 (37%), Positives = 227/366 (62%), Gaps = 1/366 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FTIQ + L K L+ + V+ + + P+L N+L+ VE LSLT T+LE+EL+ ++ +
Sbjct: 1 MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
PG+ T+ RK+++IC++L I ++++ +K+ + + S + LSTL A+ FP +
Sbjct: 61 TKYIPGKTTISGRKILNICRTLSEKSKIKMQLKNKKMYISSENSNYILSTLSADTFPNHQ 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
F I+ + L+ +I++T F+M +QDVRYYLNGMLLE LRSVATDG+RLA+
Sbjct: 121 NFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLEKKDKFLRSVATDGYRLAI- 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
S + +I+P K ++EL +LL Q + I++G + IR T FT++L++G
Sbjct: 180 SYTQLKKDINFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTTQLIEG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
++PDY+ VL + ++ + L+++ R AIL++EK+ GI +++ NG K+ ++N E+
Sbjct: 240 EYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIKIENGKFKVLSDNQEE 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
E AE+ +++Y G +EI NV YLLDV+ I +E + L+ S SS + +N +AY
Sbjct: 300 ETAEDLFEIDYFGEKIEISINVYYLLDVINNIKSENIALFLNKSKSSIQIEAENNSSNAY 359
Query: 361 VVMPMR 366
VVM ++
Sbjct: 360 VVMLLK 365
>gb|AAC38107.1| (AF008210) DNA polymerase III beta subunit [Buchnera aphidicola]
Length = 366
Score = 257 bits (657), Expect = 7e-68
Identities = 136/366 (37%), Positives = 227/366 (62%), Gaps = 1/366 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FTIQ + L K L+ + V+ + + P+L N+L+ VE LSLT T+LE+EL+ ++ +
Sbjct: 1 MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
PG+ T+ RK+++IC++L I ++++ +K+ + + S + LSTL A+ FP +
Sbjct: 61 TKYIPGKTTISGRKILNICRTLSEKSKIKMQLKNKKMYISSENSNYILSTLSADTFPNHQ 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
F I+ + L+ +I++T F+M +QDVRYYLNGMLLE LRSVATDG+RLA+
Sbjct: 121 NFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLEKKDKFLRSVATDGYRLAI- 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
S + +I+P K ++EL +LL Q + I++G + IR T FT++L++G
Sbjct: 180 SYTQLKKDINFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTTQLIEG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
++PDY+ VL + ++ + L+++ R AIL++EK+ GI +++ NG K+ ++N E+
Sbjct: 240 EYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIKIENGKFKVLSDNQEE 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
E AE+ +++Y G +EI NV YLLDV+ I +E + L+ S SS + +N +AY
Sbjct: 300 ETAEDLFEIDYFGEKIEISINVYYLLDVINNIKSENIALFLNKSKSSIQIEAENNSSNAY 359
Query: 361 VVMPMR 366
VVM ++
Sbjct: 360 VVMLLK 365
>gb|AAA73150.1| (M80817) dnaN [Buchnera aphidicola]
Length = 366
Score = 257 bits (657), Expect = 7e-68
Identities = 136/366 (37%), Positives = 227/366 (62%), Gaps = 1/366 (0%)
Query: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60
M FTIQ + L K L+ + V+ + + P+L N+L+ VE LSLT T+LE+EL+ ++ +
Sbjct: 1 MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60
Query: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPTVE 120
PG+ T+ RK+++IC++L I ++++ +K+ + + S + LSTL A+ FP +
Sbjct: 61 TKYIPGKTTISGRKILNICRTLSEKSKIKMQLKNKKMYISSENSNYILSTLSADTFPNHQ 120
Query: 121 EGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMC 180
F I+ + L+ +I++T F+M +QDVRYYLNGMLLE LRSVATDG+RLA+
Sbjct: 121 NFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLEKKDKFLRSVATDGYRLAI- 179
Query: 181 SLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDG 240
S + +I+P K ++EL +LL Q + I++G + IR T FT++L++G
Sbjct: 180 SYTQLKKDINFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTTQLIEG 239
Query: 241 KFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQ 300
++PDY+ VL + ++ + L+++ R AIL++EK+ GI +++ NG K+ ++N E+
Sbjct: 240 EYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIKIENGKFKVLSDNQEE 299
Query: 301 EEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAY 360
E AE+ +++Y G +EI NV YLLDV+ I +E + L+ S SS + +N +AY
Sbjct: 300 ETAEDLFEIDYFGEKIEISINVYYLLDVINNIKSENIALFLNKSKSSIQIEAENNSSNAY 359
Query: 361 VVMPMR 366
VVM ++
Sbjct: 360 VVMLLK 365
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.318 0.137 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,877,700
Number of Sequences: 559965
Number of extensions: 5026731
Number of successful extensions: 13857
Number of sequences better than 1.0e-02: 100
Number of HSP's better than 0.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 13093
Number of HSP's gapped (non-prelim): 244
length of query: 367
length of database: 168,382,221
effective HSP length: 118
effective length of query: 249
effective length of database: 102,306,351
effective search space: 25474281399
effective search space used: 25474281399
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 96 (41.6 bits)