Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03393.1|AE004440_3 (AE004440) RecF protein [Pseudomon... 734 0.0
gb|AAN65646.1|AE016191_3 (AE016774) DNA replication and rep... 629 e-179
gb|AAO53560.1| (AE016856) DNA replication and repair protei... 608 e-173
emb|CAA44365.1| (X62504) recF protein [Pseudomonas putida] 603 e-172
emb|CAA60158.1| (X86404) recF [Azotobacter vinelandii] 341 5e-93
gb|AAN53097.1|AE015452_10 (AE015452) DNA replication and re... 317 6e-86
dbj|BAC58276.1| (AP005073) RecF protein [Vibrio parahaemoly... 284 5e-76
gb|AAF93192.1| (AE004093) recF protein [Vibrio cholerae] 281 3e-75
gb|AAO09486.1|AE016800_91 (AE016800) Recombinational DNA re... 280 1e-74
gb|AAP18990.1| (AE016991) Rec protein [Shigella flexneri 2a... 275 3e-73
gb|AAN45207.1|AE015383_7 (AE015383) ssDNA and dsDNA binding... 275 3e-73
gb|AAN83055.1|AE016769_170 (AE016769) DNA replication and r... 274 7e-73
gb|AAA24511.1| (K02179) RecF [Escherichia coli] 274 7e-73
emb|CAA27870.1| (X04341) unnamed protein product [Escherich... 274 7e-73
gb|AAG58897.1|AE005601_3 (AE005601) ssDNA and dsDNA binding... 274 7e-73
gb|AAC76723.1| (AE000447) ssDNA and dsDNA binding, ATP bind... 274 7e-73
gb|AAA83960.1| (M58352) putative [Proteus mirabilis] 274 7e-73
dbj|BAB38058.1| (AP002566) DNA repair and genetic recombina... 274 7e-73
gb|AAM87653.1|AE014012_10 (AE014012) ssDNA and dsDNA bindin... 272 3e-72
emb|CAC93545.1| (AJ414160) DNA metabolism protein [Yersinia... 272 3e-72
gb|AAA62051.1| (L10328) recF (CG Site No. 308) [Escherichia... 272 3e-72
gb|AAL22695.1| (AE008878) gap repair protein [Salmonella ty... 268 3e-71
gb|AAO71179.1| (AE016846) recF protein [Salmonella enterica... 266 1e-70
emb|CAD03159.1| (AL627280) recF protein [Salmonella enteric... 266 1e-70
gb|AAC22653.1| (U32780) DNA/ATP binding protein (recF) [Hae... 262 2e-69
emb|CAA45173.1| (X63626) RecF [Actinobacillus pleuropneumon... 253 1e-66
emb|CAA44366.1| (X62505) recF protein [Salmonella typhimurium] 253 2e-66
gb|AAO89573.1| (AE016960) recF protein [Coxiella burnetii R... 249 2e-65
gb|AAK03243.1| (AE006156) RecF [Pasteurella multocida] 247 9e-65
gb|AAP95740.1| (AE017153) DNA replication and repair protei... 245 3e-64
emb|CAA32896.1| (X14792) recF protein (1 is 2nd base in cod... 227 8e-59
gb|AAM34895.1| (AE011623) DNA replication and repair RecF p... 196 2e-49
gb|AAO27911.1| (AE012553) DNA replication and repair RecF p... 190 1e-47
gb|AAF82816.1|AE003855_3 (AE003855) DNA replication and rep... 190 1e-47
gb|AAM39322.1| (AE012093) DNA replication and repair RecF p... 190 1e-47
gb|AAL30091.1| (AY057934) RecF protein [Xanthomonas campest... 187 9e-47
emb|CAA32895.1| (X14791) unnamed protein product [Pseudomon... 166 2e-40
gb|AAM80462.1| (AE014172) RecF protein [Streptococcus pyoge... 129 3e-29
gb|AAL98671.1| (AE010124) recF protein [Streptococcus pyoge... 129 3e-29
dbj|BAC64946.1| (AP005146) RecF protein [Streptococcus pyog... 129 3e-29
gb|AAA85783.1| (U07342) RecF protein [Streptococcus pyogenes] 129 4e-29
gb|AAK34832.1| (AE006637) RecF protein [Streptococcus pyoge... 128 6e-29
dbj|BAB03723.1| (AP001507) DNA repair and genetic recombina... 128 6e-29
dbj|BAA82688.1| (AB013492) 63%-identity [Bacillus halodurans] 128 6e-29
gb|AAN01014.1|AE014289_14 (AE014289) recF protein [Streptoc... 124 7e-28
emb|CAD47774.1| (AL766856) Unknown [Streptococcus agalactia... 124 7e-28
gb|AAM23321.1| (AE012974) Recombinational DNA repair ATPase... 122 3e-27
gb|AAL94212.1| (AE010515) RECF protein [Fusobacterium nucle... 122 5e-27
gb|AAL41098.1| (AE008981) DNA replication and repair protei... 122 5e-27
gb|AAK85892.1| (AE007949) AGR_C_109p [Agrobacterium tumefac... 122 5e-27
gb|AAK06073.1|AE006427_8 (AE006427) RecF protein [Lactococc... 122 5e-27
emb|CAC98220.1| (AL591973) RecF protein [Listeria monocytog... 122 5e-27
emb|CAC95238.1| (AL596163) RecF protein [Listeria innocua] 120 1e-26
emb|CAA61549.1| (X89367) recF [Lactococcus lactis] 120 1e-26
gb|AAO03600.1|AE016744_3 (AE016744) DNA repair and genetic ... 118 7e-26
gb|AAN64013.1|AF434658_10 (AF434658) recombination protein ... 118 7e-26
gb|AAL00834.1| (AE008567) Recombination protein RecF [Strep... 118 7e-26
gb|AAN47202.1|AE011192_3 (AE011192) RecF protein [Leptospir... 117 1e-25
gb|AAO79889.1| (AE016947) DNA replication and repair protei... 117 1e-25
emb|CAD62706.1| (AL935252) DNA repair and genetic recombina... 117 1e-25
gb|AAK76275.1| (AE007510) recF protein [Streptococcus pneum... 117 1e-25
gb|AAK77991.1|AE007513_4 (AE007513) RecF, ABC family ATPase... 117 1e-25
emb|CAB11780.1| (Z99104) recF [Bacillus subtilis subsp. sub... 117 1e-25
dbj|BAA05240.1| (D26185) recombination protein [Bacillus su... 117 1e-25
gb|AAO79360.1| (AE016944) DNA replication and repair protei... 116 2e-25
dbj|BAB52001.1| (AP003007) RecF protein [Mesorhizobium loti] 116 2e-25
dbj|BAB41220.1| (AP003129) DNA repair and genetic recombina... 115 4e-25
dbj|BAB93869.1| (AP004822) DNA repair and genetic recombina... 115 4e-25
dbj|BAB56166.1| (AP003358) DNA repair and genetic recombina... 115 4e-25
dbj|BAB75073.1| (AP003592) DNA repair and genetic recombina... 114 7e-25
gb|AAM73500.1| (AE012973) recombination/replication protein... 113 2e-24
gb|AAF39207.1| (AE002301) recF protein, putative [Chlamydia... 112 4e-24
emb|CAC41575.1| (AL591782) DNA REPAIR PROTEIN [Sinorhizobiu... 112 4e-24
gb|AAN59745.1|AE015036_4 (AE015036) putative RecF protein, ... 112 5e-24
dbj|BAB79710.1| (AP003185) DNA repair and genetic recombina... 111 6e-24
gb|AAO34745.1| (AE015936) recFprotein [Clostridium tetani E88] 110 1e-23
emb|CAE21890.1| (BX572100) putative DNA repair and genetic ... 110 1e-23
gb|AAP05190.1| (AE016995) recF protein [Chlamydophila cavia... 109 2e-23
dbj|BAC11960.1| (AP004593) DNA repair and genetic recombina... 109 3e-23
gb|AAF10663.1|AE001959_3 (AE001959) recF protein [Deinococc... 108 5e-23
emb|CAE08564.1| (BX569694) putative DNA repair and genetic ... 107 1e-22
dbj|BAC09996.1| (AP005377) DNA repair and genetic recombina... 107 1e-22
gb|AAC67665.1| (AE001282) ABC superfamily ATPase [Chlamydia... 107 2e-22
gb|AAP07114.1| (AE016998) DNA replication and repair protei... 106 3e-22
gb|AAP24062.1| (AE017024) DNA replication and repair protei... 105 3e-22
gb|AAN28961.1|AE014315_3 (AE014315) recF protein [Brucella ... 104 1e-21
dbj|BAA17572.1| (D90907) RecF protein [Synechocystis sp. PC... 102 3e-21
gb|AAL53122.1| (AE009627) RECF PROTEIN [Brucella melitensis... 102 4e-21
dbj|BAC72031.1| (AP005038) putative DNA recombination and r... 101 6e-21
gb|AAO44100.1| (AE016850) recF protein [Tropheryma whipplei... 99 5e-20
emb|CAB92996.1| (AL939118) DNA replication protein [Strepto... 99 5e-20
gb|AAA65213.1| (L27063) putative [Streptomyces coelicolor A... 99 5e-20
emb|CAD66695.1| (BX251410) DNA replication and repair prote... 99 5e-20
gb|AAM12398.1| (AY083906) recombinase F [Zymomonas mobilis] 97 2e-19
dbj|BAC46092.1| (AP005937) DNA replication and repair prote... 96 3e-19
gb|AAQ00772.1| (AE017166) Recombinational DNA repair ATPase... 94 2e-18
gb|AAF75988.1|AF248639_7 (AF248639) RecF [Acholeplasma laid... 94 2e-18
gb|AAB02817.1| (U51440) RecF [Actinobacillus pleuropneumoniae] 90 2e-17
gb|AAN24459.1|AE014685_6 (AE014685) recombination protein R... 90 2e-17
dbj|BAC16814.1| (AP005214) putative DNA replication and rep... 89 6e-17
>gb|AAG03393.1|AE004440_3 (AE004440) RecF protein [Pseudomonas aeruginosa PAO1]
Length = 369
Score = 734 bits (1894), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV
Sbjct: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP
Sbjct: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD
Sbjct: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL
Sbjct: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV
Sbjct: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS 360
YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS
Sbjct: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS 360
Query: 361 QTTTIGSEA 369
QTTTIGSEA
Sbjct: 361 QTTTIGSEA 369
>gb|AAN65646.1|AE016191_3 (AE016774) DNA replication and repair protein RecF [Pseudomonas
putida KT2440]
Length = 367
Score = 629 bits (1621), Expect = e-179
Identities = 307/362 (84%), Positives = 336/362 (92%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSL R+ VTAVRNLHPVTL PSPRINILYG NGSGKTSVLEA+HLLGLARSFRS RL PV
Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQYE+AACTVFG+V L G SNLG+SRERQGEFTIRIDGQNARSAAQLAE LPLQLINP
Sbjct: 61 IQYEQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIRIDGQNARSAAQLAELLPLQLINP 120
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
DSFRLLEGAPKIRRQFLDWGVFHVEPRFLP WQRLQKALRQRNSWLRHG LDPASQAAWD
Sbjct: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQAAWD 180
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
REL LAS EID YRR+YI+ALKPVFE TL+ELV LD LTLSYYRGWDKDR+L EVLASSL
Sbjct: 181 RELCLASAEIDEYRRNYIKALKPVFERTLSELVELDGLTLSYYRGWDKDRELQEVLASSL 240
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
LRDQQMGHTQAGPQRADLR+RLAG+NAA+ILSRGQQKLVVCALRIAQGHL+++A+RG C+
Sbjct: 241 LRDQQMGHTQAGPQRADLRLRLAGNNAADILSRGQQKLVVCALRIAQGHLVSQARRGHCI 300
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS 360
YLVDDLPSELD+QHR ALCRLLE+L CQVFITCVD +LL++GW+T+TPV++FHVE G+++
Sbjct: 301 YLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVALFHVEQGRIT 360
Query: 361 QT 362
QT
Sbjct: 361 QT 362
>gb|AAO53560.1| (AE016856) DNA replication and repair protein RecF [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 367
Score = 608 bits (1568), Expect = e-173
Identities = 296/362 (81%), Positives = 332/362 (91%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSL+RVSVT VRNLHPVTLSPSPRINILYG NGSGKTSVLEAIHLLG+ARSFRS+RL PV
Sbjct: 1 MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQYE+ +CTVFGQV LA G SNLG+SR+RQGEF IRIDGQNARSAAQLAE LPLQLINP
Sbjct: 61 IQYEQPSCTVFGQVDLAQGGHSNLGVSRDRQGEFQIRIDGQNARSAAQLAEILPLQLINP 120
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
DSFRLLEGAPKIRRQFLDWGVFHVEPRF+ WQRLQKAL+QRNSWLRHG LD ASQAAWD
Sbjct: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALKQRNSWLRHGTLDAASQAAWD 180
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
REL LASDEID +RR+YI+ALKPVFE+TL+ELV L+ LTLSYYRGWDK+++L VLASSL
Sbjct: 181 RELCLASDEIDEFRRAYIKALKPVFEKTLSELVELEGLTLSYYRGWDKEKELSTVLASSL 240
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
RDQQMGHTQAGPQRADLR+RL HNAA+ILSRGQQKLVVCALRIAQGHL+++ +RGQC+
Sbjct: 241 NRDQQMGHTQAGPQRADLRLRLGAHNAADILSRGQQKLVVCALRIAQGHLVSQVRRGQCI 300
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS 360
YLVDDLPSELD+ HR ALCRLLE+L CQVFITCVD + L++GW+TDTPV++FHVE G+++
Sbjct: 301 YLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTDTPVALFHVEQGRIT 360
Query: 361 QT 362
QT
Sbjct: 361 QT 362
>emb|CAA44365.1| (X62504) recF protein [Pseudomonas putida]
Length = 365
Score = 603 bits (1555), Expect = e-172
Identities = 299/362 (82%), Positives = 329/362 (90%), Gaps = 2/362 (0%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSL R+ VTAVRNLHPVTL PSPRINILYG NGSGKTSVLEA+HLLGLARSFRS RL PV
Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQYE+AACTVFG+V L G SNLG+SRERQGEFTIRIDGQNAR A QLAE LPLQLINP
Sbjct: 61 IQYEQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIRIDGQNARQA-QLAELLPLQLINP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
DSFRLLEGAPKIRRQFLDWGVFHVEPRFLP WQRLQKALRQRNSWLRHG LDPASQAAWD
Sbjct: 120 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQAAWD 179
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
REL L S EID YRR+YI+ALKPVFE TL+ELV LD LTLSYYRGWDKDR+L EVLASSL
Sbjct: 180 RELCLRSAEIDEYRRNYIKALKPVFERTLSELVELDGLTLSYYRGWDKDRELQEVLASSL 239
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
LRDQQMGHTQAGPQRADLR+RLAG+NAA+ILSRGQQKLV + IAQGHL+++A+RG C+
Sbjct: 240 LRDQQMGHTQAGPQRADLRLRLAGNNAADILSRGQQKLVGMRI-IAQGHLVSQARRGHCI 298
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS 360
YLVDDLPSELD+QHR ALCRLLE+L CQVFITCVD +LL++GW+T+TPV++FHVE G+++
Sbjct: 299 YLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVALFHVEQGRIT 358
Query: 361 QT 362
QT
Sbjct: 359 QT 360
>emb|CAA60158.1| (X86404) recF [Azotobacter vinelandii]
Length = 364
Score = 341 bits (874), Expect = 5e-93
Identities = 198/354 (55%), Positives = 229/354 (64%), Gaps = 45/354 (12%)
Query: 22 SPRIN-ILYGDNGSGKT------SVLEAIHLLGLARSFRSARLQPVIQYEEAACTVFGQV 74
S R+N + G NGSGK S A L SFRS RL PVIQ+E+ ACTVFGQV
Sbjct: 34 SARVNQYISGPNGSGKRPAYWRRSTCSAWQL----SSFRSQRLSPVIQHEQPACTVFGQV 89
Query: 75 MLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINPDSFRLLEGAPKIRR 134
+ +G NLG++R R GE IRIDGQN RSAAQLAE+LPLQLINPDSFRLLEGAPK+RR
Sbjct: 90 LWNDGRVRNLGVARNRLGELQIRIDGQNVRSAAQLAESLPLQLINPDSFRLLEGAPKVRR 149
Query: 135 QFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDRELSLASDEIDAYR 194
QFLDWGVFHVE RFLP W RLQ ALRQRNSWLRHG++DP SQAAWDREL L R
Sbjct: 150 QFLDWGVFHVEQRFLPAWDRLQTALRQRNSWLRHGRIDPVSQAAWDRELCL--------R 201
Query: 195 RSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSLLRDQQMGHTQAGPQ 254
RS + L+ E A + L +S W R PQ
Sbjct: 202 RSDSELLRAGRERCSARFLLLPFRAIS---NWGIPRR---------------------PQ 237
Query: 255 RADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCVYLVDDLPSELDEQH 314
RAD R RLA + L+IAQGHL++RA+R +C+YLVDDLPSELDEQH
Sbjct: 238 RADRRRRLARTMPRTCCRAVTRSWWSVRLKIAQGHLVDRARR-ECIYLVDDLPSELDEQH 296
Query: 315 RMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVSQTTTIGSE 368
R ALCRLLE+L CQVFITCVD + L++GWRTDTPV++FHV ++Q TIGSE
Sbjct: 297 RRALCRLLEELHCQVFITCVDLEALREGWRTDTPVALFHVNRALITQ-PTIGSE 349
>gb|AAN53097.1|AE015452_10 (AE015452) DNA replication and repair protein RecF [Shewanella
oneidensis MR-1]
Length = 360
Score = 317 bits (813), Expect = 6e-86
Identities = 165/361 (45%), Positives = 228/361 (63%), Gaps = 5/361 (1%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSL R+++ + RN+ LSPS IN++YG NGSGKTS+LEAI+ LG+ RSFRS Q V
Sbjct: 1 MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I ++ T+F + L G S +G+ R R GE ++IDG+ + + LAETLP+Q+I P
Sbjct: 61 INNDQDKLTLFATLNLPRG-DSKIGLRRFRSGETEVKIDGEKVKRLSTLAETLPIQVITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAA-W 179
+SF LL PK RRQF+DWG FH +P+F W +++ L+QRN LR+G P Q W
Sbjct: 120 ESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGS--PYDQIQYW 177
Query: 180 DRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASS 239
DRE ++++ R Y+ +L + + + E + D+ +S+ RGWD D ++L S
Sbjct: 178 DREFIRYTEQVTEIRNRYVDSLNELLKGIIGEFLPQVDVKVSFTRGWDSKTDFAQLLESQ 237
Query: 240 LLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQC 299
RD GHT +GP +ADLR+R+ A + LSRGQ KL+VCALRIAQG L+ +
Sbjct: 238 YPRDLATGHTVSGPHKADLRLRVGTLPAQDALSRGQLKLLVCALRIAQGKLLKQQIDKHS 297
Query: 300 VYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKV 359
+YLVDDLPSELD QHR L + L D G QVF+T ++P + D T P MFHVEHG+V
Sbjct: 298 IYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHT-PPSRMFHVEHGRV 356
Query: 360 S 360
+
Sbjct: 357 T 357
>dbj|BAC58276.1| (AP005073) RecF protein [Vibrio parahaemolyticus]
Length = 359
Score = 284 bits (727), Expect = 5e-76
Identities = 150/359 (41%), Positives = 215/359 (59%), Gaps = 3/359 (0%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M L+R+ + RN+ + S N L G NGSGKTSVLEAI+LLG RSF+S+ V
Sbjct: 1 MPLSRLIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQ E V G+ + ++ +GI+++R G ++I GQ+ + AQLA+ LPLQLI+P
Sbjct: 61 IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVKIGGQSGQKLAQLAQVLPLQLIHP 120
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
+ F LL PK RR F+DWGVFH EP F W R ++ +QRN+ L+ + WD
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTAS-SYRELSYWD 179
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
+E++ ++ I +R YI+ +K V E + ++ L YYRGWDKD E+L +
Sbjct: 180 QEMARLAENISQWRSLYIEQMKTVAETICQTFLPEFEIQLKYYRGWDKDTPYQEILEKNF 239
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
RDQ +G+T +GP +ADLRI++ G ++LSRGQ KL+VCALR+AQG + QC+
Sbjct: 240 ERDQSLGYTFSGPNKADLRIKVNGTPVEDVLSRGQLKLMVCALRVAQGQHLTAMTGKQCI 299
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKV 359
YL+DD SELD Q R L L++ G QVF++ + + D D +FHVEHG++
Sbjct: 300 YLIDDFASELDSQRRKRLADCLKETGAQVFVSSITENQIAD--MLDDNGKLFHVEHGRI 356
>gb|AAF93192.1| (AE004093) recF protein [Vibrio cholerae]
Length = 363
Score = 281 bits (720), Expect = 3e-75
Identities = 150/365 (41%), Positives = 216/365 (59%), Gaps = 7/365 (1%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M L+R+ + RN+ + S N L G NGSGKTSVLEAI+LLG RSF+S+ +
Sbjct: 1 MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60
Query: 61 IQYEEAACTVFGQV----MLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQ 116
IQ E + V G++ + ++ +GI+++R G ++I GQ + AQLA+ LPLQ
Sbjct: 61 IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120
Query: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176
LI+P+ F LL PK RR F+DWGVFH EP F W R ++ +QRN+ L+ +
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQ-SYREL 179
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
+ WD+EL+ +++ID +R SY+ LK V E+ + D+ L YYRGW+KD+ +L
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQLKNVAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RDQQ+G+T +GP +ADLRI++ ++LSRGQ KL+VCALR+AQG +
Sbjct: 240 EKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVLSRGQLKLMVCALRVAQGQHLTELTG 299
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
QC+YL+DD SELD R L L+ G QVF++ + + D D FHV H
Sbjct: 300 KQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVAD--MLDESSKTFHVAH 357
Query: 357 GKVSQ 361
G + Q
Sbjct: 358 GVIEQ 362
>gb|AAO09486.1|AE016800_91 (AE016800) Recombinational DNA repair ATPase [Vibrio vulnificus
CMCP6]
Length = 359
Score = 280 bits (716), Expect = 1e-74
Identities = 148/361 (40%), Positives = 215/361 (59%), Gaps = 3/361 (0%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M L+R+ + RN+ ++ SP N L G NGSGKTSVLEAI+LLG RSF+SA V
Sbjct: 1 MPLSRLIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQ E V+G+ + ++ +GI+++R G ++I GQ+ + AQLA+ LPLQLI+P
Sbjct: 61 IQNECDQLFVYGRFLNSDQFELPIGINKQRDGTTEVKIGGQSGQKLAQLAQVLPLQLIHP 120
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
+ F LL PK RR F+DWGVFH EP F W R ++ +QRN+ L+ K + WD
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAK-SYQELSYWD 179
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
+E++ ++ I +R Y+ ++ E+ E + + L YYRGW+K+ ++L +
Sbjct: 180 KEMARLAELISQWRADYVAQMQSKAEQLCQEFLPEFHIQLKYYRGWEKETPYQQILEENF 239
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
RDQ +G+T +GP +ADLRI++ ++LSRGQ KL+VCALR+AQG + QCV
Sbjct: 240 ERDQTLGYTVSGPNKADLRIKVNNTPVEDVLSRGQLKLMVCALRLAQGQHLTEKTGKQCV 299
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS 360
YL+DD SELD Q R L L+ G QVF++ + + D D +FHVE G +
Sbjct: 300 YLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISD--MRDDSGRLFHVEQGVIE 357
Query: 361 Q 361
Q
Sbjct: 358 Q 358
>gb|AAP18990.1| (AE016991) Rec protein [Shigella flexneri 2a str. 2457T]
Length = 357
Score = 275 bits (703), Expect = 3e-73
Identities = 148/364 (40%), Positives = 220/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + ++T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMDDTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAN45207.1|AE015383_7 (AE015383) ssDNA and dsDNA binding, ATP binding [Shigella flexneri
2a str. 301]
Length = 357
Score = 275 bits (703), Expect = 3e-73
Identities = 148/364 (40%), Positives = 220/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + ++T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMDDTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAN83055.1|AE016769_170 (AE016769) DNA replication and repair protein recF [Escherichia
coli CFT073]
Length = 357
Score = 274 bits (700), Expect = 7e-73
Identities = 148/364 (40%), Positives = 219/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + +T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAA24511.1| (K02179) RecF [Escherichia coli]
Length = 357
Score = 274 bits (700), Expect = 7e-73
Identities = 148/364 (40%), Positives = 219/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + +T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>emb|CAA27870.1| (X04341) unnamed protein product [Escherichia coli]
Length = 357
Score = 274 bits (700), Expect = 7e-73
Identities = 148/364 (40%), Positives = 219/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + +T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAG58897.1|AE005601_3 (AE005601) ssDNA and dsDNA binding, ATP binding [Escherichia coli
O157:H7 EDL933]
Length = 357
Score = 274 bits (700), Expect = 7e-73
Identities = 148/364 (40%), Positives = 219/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + +T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAC76723.1| (AE000447) ssDNA and dsDNA binding, ATP binding [Escherichia coli
K12]
Length = 357
Score = 274 bits (700), Expect = 7e-73
Identities = 148/364 (40%), Positives = 219/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + +T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAA83960.1| (M58352) putative [Proteus mirabilis]
Length = 362
Score = 274 bits (700), Expect = 7e-73
Identities = 147/361 (40%), Positives = 211/361 (58%), Gaps = 5/361 (1%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M L+R+ + RN+ L + N L G NGSGKTS+LEAI+ LG R+FRSA+ V
Sbjct: 1 MILSRLLIRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSAQANRV 60
Query: 61 IQYEEAACTVFGQV--MLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLI 118
IQ++E A + G++ + ++G+S++R+G T+RIDG + A+LA+ LP+QLI
Sbjct: 61 IQHDENAFILHGRLSGLDEESRGYSIGLSKDREGNSTVRIDGSDGHKIAELAKLLPMQLI 120
Query: 119 NPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAA 178
P+ F LL G PK RR F+DWG FH EPRF W L++ L+QRN+ LR
Sbjct: 121 TPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFAAWSDLKRVLKQRNAALRQAS-SYRQLLP 179
Query: 179 WDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLAS 238
WD+EL L +++I +R Y + + EET + L +S+ RGWDK+ D ++L
Sbjct: 180 WDKELILLTEQISQWRAEYTEDIAKDIEETCQLFLPEFTLKVSFQRGWDKETDYAQLLER 239
Query: 239 SLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQ 298
RD+ + +T G +ADLRIR G ++LSRGQ KL++CALR+AQG R +
Sbjct: 240 QFERDKVLSYTSLGAHKADLRIRANGTPVEDMLSRGQLKLLMCALRLAQGEYFTRKNGQR 299
Query: 299 CVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGK 358
C+YL+DD SELD R L L+ QVF++ + +KD D +F VEHGK
Sbjct: 300 CLYLLDDFASELDANRRQLLAERLKSTQAQVFVSAITSGQVKD--MLDVNSRLFSVEHGK 357
Query: 359 V 359
+
Sbjct: 358 I 358
>dbj|BAB38058.1| (AP002566) DNA repair and genetic recombination protein RecF
[Escherichia coli O157:H7]
Length = 357
Score = 274 bits (700), Expect = 7e-73
Identities = 148/364 (40%), Positives = 219/364 (60%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + +T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAM87653.1|AE014012_10 (AE014012) ssDNA and dsDNA binding protein [Yersinia pestis KIM]
Length = 440
Score = 272 bits (695), Expect = 3e-72
Identities = 151/360 (41%), Positives = 215/360 (59%), Gaps = 6/360 (1%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M+LTR+ + RN+ L+ + N L G NGSGKTSVLEA++ LG R+FRS + V
Sbjct: 80 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 139
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E A + G+V AN +++G+S+ RQG+ +RIDG + A+LA+ LP+QLI P
Sbjct: 140 IRHECAEFVLHGRVD-ANEREASVGLSKSRQGDTKVRIDGTDGHKVAELAQMLPMQLITP 198
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQA-AW 179
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR ++ +Q AW
Sbjct: 199 EGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVSRYTQIRAW 256
Query: 180 DRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASS 239
D+E+ ++ I +R +Y A+ T A + L+ S+ RGWDK+ D E+LA
Sbjct: 257 DQEIIPLAERISEWRAAYSDAIAADISATCALFLPEFALSFSFQRGWDKESDYGELLARQ 316
Query: 240 LLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQC 299
RD+ + +T GP +AD RIR G ++LSRGQ KL++CALR+AQG + R +C
Sbjct: 317 FERDRALTYTAVGPHKADFRIRADGTPVEDLLSRGQLKLLMCALRLAQGEFLTRQSGRRC 376
Query: 300 VYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKV 359
+YL+DD SELD R L L+ QVF++ V + + D MF VEHGK+
Sbjct: 377 LYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVAD--MVGEKGKMFRVEHGKI 434
>emb|CAC93545.1| (AJ414160) DNA metabolism protein [Yersinia pestis CO92]
Length = 361
Score = 272 bits (695), Expect = 3e-72
Identities = 151/360 (41%), Positives = 215/360 (59%), Gaps = 6/360 (1%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M+LTR+ + RN+ L+ + N L G NGSGKTSVLEA++ LG R+FRS + V
Sbjct: 1 MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E A + G+V AN +++G+S+ RQG+ +RIDG + A+LA+ LP+QLI P
Sbjct: 61 IRHECAEFVLHGRVD-ANEREASVGLSKSRQGDTKVRIDGTDGHKVAELAQMLPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQA-AW 179
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ LR ++ +Q AW
Sbjct: 120 EGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVSRYTQIRAW 177
Query: 180 DRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASS 239
D+E+ ++ I +R +Y A+ T A + L+ S+ RGWDK+ D E+LA
Sbjct: 178 DQEIIPLAERISEWRAAYSDAIAADISATCALFLPEFALSFSFQRGWDKESDYGELLARQ 237
Query: 240 LLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQC 299
RD+ + +T GP +AD RIR G ++LSRGQ KL++CALR+AQG + R +C
Sbjct: 238 FERDRALTYTAVGPHKADFRIRADGTPVEDLLSRGQLKLLMCALRLAQGEFLTRQSGRRC 297
Query: 300 VYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKV 359
+YL+DD SELD R L L+ QVF++ V + + D MF VEHGK+
Sbjct: 298 LYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVAD--MVGEKGKMFRVEHGKI 355
>gb|AAA62051.1| (L10328) recF (CG Site No. 308) [Escherichia coli]
Length = 357
Score = 272 bits (695), Expect = 3e-72
Identities = 147/364 (40%), Positives = 218/364 (59%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS ++ V
Sbjct: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH EP F W L++ L+QRN+ R + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAXRQVTRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y + +T + + LT S+ RGW+K+ + EVL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
+ RD+Q+ +T GP +ADLRIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD++ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAL22695.1| (AE008878) gap repair protein [Salmonella typhimurium LT2]
Length = 357
Score = 268 bits (686), Expect = 3e-71
Identities = 147/364 (40%), Positives = 217/364 (59%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS + V
Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +++G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-SEERETSIGLTKDKQGDSKVRIDGTDGHKIAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH E F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y A+ +T + + LT S+ RGW+K+ D +VL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTFSFQRGWEKETDYADVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
S RD+ + +T GP +AD RIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERSFERDRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD+ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAO71179.1| (AE016846) recF protein [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
Length = 357
Score = 266 bits (681), Expect = 1e-70
Identities = 146/364 (40%), Positives = 216/364 (59%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSL+R+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS + V
Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ +++G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETSIGLTKDKQGDSKVRIDGTDGHKIAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH E F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y A+ +T + + LT S+ RGW+K+ D +VL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTFSFQRGWEKETDYADVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
S RD+ + +T GP +AD RIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERSFERDRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD+ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>emb|CAD03159.1| (AL627280) recF protein [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 357
Score = 266 bits (681), Expect = 1e-70
Identities = 146/364 (40%), Positives = 216/364 (59%), Gaps = 12/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSL+R+ + RN+ L+ SP N L G NGSGKTSVLEAI+ LG R+FRS + V
Sbjct: 1 MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ +++G+++++QG+ +RIDG + A+LA +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-GEERETSIGLTKDKQGDSKVRIDGTDGHKIAELAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR----HGKLDPASQ 176
+ F LL G PK RR FLDWG FH E F W L++ L+QRN+ LR + +L P
Sbjct: 120 EGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y A+ +T + + LT S+ RGW+K+ D +VL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTFSFQRGWEKETDYADVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
S RD+ + +T GP +AD RIR G + LSRGQ KL++CALR+AQG + R
Sbjct: 235 ERSFERDRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
+C+YL+DD SELD+ R L L+ QVF++ + + + D +D MF VE
Sbjct: 295 RRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVID--MSDENSKMFTVEK 352
Query: 357 GKVS 360
GK++
Sbjct: 353 GKIT 356
>gb|AAC22653.1| (U32780) DNA/ATP binding protein (recF) [Haemophilus influenzae Rd]
Length = 359
Score = 262 bits (670), Expect = 2e-69
Identities = 135/341 (39%), Positives = 206/341 (60%), Gaps = 2/341 (0%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M+++R+ V RNL V L P N L G+NGSGKTS+LEAI LG RSF+SA +
Sbjct: 1 MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I Y+E T+FGQ+ + S +G+ + RQG ++I+G++ + LA LP+QLI P
Sbjct: 61 ISYDEPHFTLFGQIQESQHQWS-IGLQKLRQGNTLVKINGEDGNKISDLAHLLPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
+ LL G P RR FLDWG+FH + F W L + L+QRN+ L + A + WD
Sbjct: 120 EGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSAIKI-WD 178
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
EL+ + ++ +R Y +AL P E+T + ++ +S+++GW+K+ D E+L +
Sbjct: 179 VELAKLAHQVSEWRAEYAEALSPEIEQTCQLFLPELEINVSFHQGWEKNADYYEILQQNF 238
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
RD+ + +T +GPQ+AD R + G ++LSRGQ KL++CALR+AQG + + K+ C+
Sbjct: 239 ERDRALNYTFSGPQKADFRFKAQGLPVEDVLSRGQLKLLMCALRLAQGEHLMKEKQRHCI 298
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKD 341
+L+DD SELD+ R L L+ G QVF+T + + LK+
Sbjct: 299 FLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKE 339
>emb|CAA45173.1| (X63626) RecF [Actinobacillus pleuropneumoniae]
Length = 360
Score = 253 bits (646), Expect = 1e-66
Identities = 138/362 (38%), Positives = 206/362 (56%), Gaps = 3/362 (0%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M L+R+ + RNL + L SP N + G NGSGKTS+LEAI LG RSF+S +
Sbjct: 1 MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I Y+ + ++ S +GI ++R G+ ++I+G++ + LA LP+Q+I P
Sbjct: 61 IHYQAEDFVLHARIDEGQHQWS-VGIQKKRSGDTLLKINGEDGNKISDLAHLLPMQVITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
+ LL G P RR FLDWG+FH F W L++ L+QRN+ L H A WD
Sbjct: 120 EGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAAL-HQVRSYAELKPWD 178
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
EL+ ++ + R SY + L+P E+T + ++ +S+++GW+K D E+LA
Sbjct: 179 IELAKLAEIVSQMRASYAEGLRPEIEKTCQFFLPELEIGVSFHQGWEKGTDYAEILAQGF 238
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
RD+ MG+T GPQ+AD R R G ++LSRGQ KL++CALR+AQG + K QC+
Sbjct: 239 ERDKAMGYTMIGPQKADFRFRANGLPVEDVLSRGQLKLLMCALRLAQGEYLVAQKERQCL 298
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCV-DPQLLKDGWRTDTPVSMFHVEHGKV 359
+L+DD SELD R L L + G QVF+T + QL + W+ S+F V+ G +
Sbjct: 299 FLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESEQDSLFQVQQGML 358
Query: 360 SQ 361
++
Sbjct: 359 TK 360
>emb|CAA44366.1| (X62505) recF protein [Salmonella typhimurium]
Length = 355
Score = 253 bits (645), Expect = 2e-66
Identities = 142/364 (39%), Positives = 214/364 (58%), Gaps = 14/364 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSLTR+ + RN+ L+ SP N L G N SGKTSVLEAI+ LG R+FRS + V
Sbjct: 1 MSLTRLLIKDFRNIENADLALSPGFNFLVGPNASGKTSVLEAIYTLGHGRAFRSLQPGRV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I++E+ A + G++ + +++G+++++QG+ +RIDG + A +A +P+QLI P
Sbjct: 61 IRHEQEAFVLHGRLQ-SEERETSIGLTKDKQGDSKVRIDGTDGHKIADVAHLMPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWL----RHGKLDPASQ 176
+ F LL G PK RR FLDWG FH E F W L++ L+QRN+ L R+ +L P
Sbjct: 120 EGFTLLTGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALAQVSRYEQLRP--- 176
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVL 236
WD+EL +++I +R Y A+ +T + + LT S+ RGW+K+ D +VL
Sbjct: 177 --WDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTFSFQRGWEKETDYADVL 234
Query: 237 ASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKR 296
S RD+ + +T GP +AD R+ G + LSRGQ KL++CALR+AQG + R +
Sbjct: 235 ERSFERDRMLTYTAHGPHKADFRMLCDGAPVEDTLSRGQLKLLMCALRLAQGQFLTR-ES 293
Query: 297 GQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEH 356
G+C+YL+D SELD+ R L L+ QVF++ + ++ +D MF VE
Sbjct: 294 GRCLYLIDAFASELDDGRRGLLASRLKATQSQVFVSELAEHVID---MSDENSKMFTVEK 350
Query: 357 GKVS 360
GK++
Sbjct: 351 GKIT 354
>gb|AAO89573.1| (AE016960) recF protein [Coxiella burnetii RSA 493]
Length = 367
Score = 249 bits (636), Expect = 2e-65
Identities = 144/356 (40%), Positives = 209/356 (58%), Gaps = 8/356 (2%)
Query: 6 VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQYEE 65
+ V RNL V ++P + N +G NG+GKTS+LE+I+ L + RSFR+ Q +IQ
Sbjct: 17 LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 76
Query: 66 AACTVFGQVMLANGIAS-NLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINPDSFR 124
+F + L NG LG+ R+ G+ +RI+G+ A S + A+ LPL ++ S R
Sbjct: 77 DRFLIF--ITLYNGTQFIPLGVERDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMSHR 134
Query: 125 LLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDRELS 184
L P++RRQFLDW +FHVEP F +WQRLQ++L+QRN+ L+ KL WD+ L
Sbjct: 135 FLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALK-AKLPLGEITHWDKMLV 193
Query: 185 LASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSLLRDQ 244
+ + R++ + KP+F + L + + L Y+RGW + L+E L +L +D
Sbjct: 194 EDGERLHQLRQNVVTEFKPLFTQMLQQFLPAYPLIGHYFRGWSEKYSLMEQLQINLKQDL 253
Query: 245 QMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCVYLVD 304
Q G+TQAGPQRAD R+ L A +ILS+GQQKLV AL AQG L+ +YL+D
Sbjct: 254 QRGYTQAGPQRADFRLTLGDLPAQDILSQGQQKLVTYALHFAQGLLLKEKTGISPIYLID 313
Query: 305 DLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMFHVEHGKVS 360
DLP+ELD R + L+ L QVFI+ +DP + R ++FHV+HGKV+
Sbjct: 314 DLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI----RLPPHSTLFHVKHGKVA 365
>gb|AAK03243.1| (AE006156) RecF [Pasteurella multocida]
Length = 358
Score = 247 bits (630), Expect = 9e-65
Identities = 130/340 (38%), Positives = 199/340 (58%), Gaps = 2/340 (0%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M+++R+ + RNL V L N L G+NGSGKTS+LEAI LG RSF+SA +
Sbjct: 1 MAISRLLIENFRNLTAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I YE+ + ++ ++G+ + RQG ++I+G++ A LA LP+QLI P
Sbjct: 61 ISYEQPHFILHAKIQ-EQAHQWSVGLQKLRQGNSVVKINGEDGNKIADLAHLLPMQLITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
+ LL G P RR FLDWG+FH F W L + L+QRN+ L+ A + WD
Sbjct: 120 EGLTLLNGGPVYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAALQQATHYQALEI-WD 178
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
REL + ++ +R Y +AL+P E+T + ++++S+++GW+KD D ++L
Sbjct: 179 RELVKLAHQVSEWRAQYAEALRPEIEQTCRLFLPELEISVSFHQGWEKDSDYADLLVRHF 238
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
RD+ +G+T +GPQ+AD R + G ++LSRGQ KL++CALR+AQG + + K C+
Sbjct: 239 ERDRAIGYTVSGPQKADFRFKANGLPVEDVLSRGQLKLLMCALRLAQGEHLMKQKERHCI 298
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLK 340
+L+DD SELD+ R L L+ G QVF++ + LK
Sbjct: 299 FLIDDFASELDQYKRALLAERLKQSGSQVFVSAITETQLK 338
>gb|AAP95740.1| (AE017153) DNA replication and repair protein RecF [Haemophilus
ducreyi 35000HP]
Length = 360
Score = 245 bits (626), Expect = 3e-64
Identities = 134/360 (37%), Positives = 201/360 (55%), Gaps = 3/360 (0%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M L+R+ + RNL + L SP N + G NGSGKTS+LEAI LG RSF+S +
Sbjct: 1 MPLSRLLINNFRNLQAIDLELSPDFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
I + + ++ S +G+ + R G+ ++I+G++ + A LA LP+Q+I P
Sbjct: 61 IHHHAENFVLHSKIDETQHQWS-VGLQKNRAGDTLLKINGEDGKKIADLAHLLPMQVITP 119
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWD 180
+ LL G P RR FLDWG+FH F W L++ L+QRN+ L K + AWD
Sbjct: 120 EGLTLLNGGPSYRRAFLDWGLFHQHLEFYSYWANLKRLLKQRNAALPQVK-SYSELKAWD 178
Query: 181 RELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSL 240
EL + + R Y +AL+P E+T + + +S+++GW+ D +VL
Sbjct: 179 IELVRLAHLVTKMRTEYAEALRPEIEKTCRFFLPELPIRVSFHQGWENGADYADVLRQGF 238
Query: 241 LRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCV 300
RDQ +G+T GPQ+AD R + G ++LSRGQ KL++CALR+AQG + K+ QC+
Sbjct: 239 ERDQNIGYTMVGPQKADFRFKANGLPVEDVLSRGQLKLLMCALRLAQGEYLVTQKKRQCL 298
Query: 301 YLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVD-PQLLKDGWRTDTPVSMFHVEHGKV 359
+L+DD SELD R L L + G QVF+T + QL + W+ +FH++ GK+
Sbjct: 299 FLIDDFASELDPMKRELLAHRLRETGSQVFVTAITAEQLNQMHWQEYAQDKLFHLKEGKL 358
>emb|CAA32896.1| (X14792) recF protein (1 is 2nd base in codon) [Pseudomonas putida]
Length = 134
Score = 227 bits (579), Expect = 8e-59
Identities = 110/129 (85%), Positives = 122/129 (94%)
Query: 200 ALKPVFEETLAELVSLDDLTLSYYRGWDKDRDLLEVLASSLLRDQQMGHTQAGPQRADLR 259
ALKPVFE TL+ELV LD LTLSYYRGWDKDR+L EVLASSLLRDQQMGHTQAGPQRADLR
Sbjct: 1 ALKPVFERTLSELVELDGLTLSYYRGWDKDRELQEVLASSLLRDQQMGHTQAGPQRADLR 60
Query: 260 IRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALC 319
+RLAG+NAA+ILSRGQQKLVVCALRIAQGHL+++A+RG C+YLVDDLPSELD+QHR ALC
Sbjct: 61 LRLAGNNAADILSRGQQKLVVCALRIAQGHLVSQARRGHCIYLVDDLPSELDDQHRRALC 120
Query: 320 RLLEDLGCQ 328
RLLE+L CQ
Sbjct: 121 RLLEELRCQ 129
>gb|AAM34895.1| (AE011623) DNA replication and repair RecF protein [Xanthomonas
axonopodis pv. citri str. 306]
Length = 368
Score = 196 bits (498), Expect = 2e-49
Identities = 133/375 (35%), Positives = 192/375 (51%), Gaps = 18/375 (4%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + R+S+ +R V L PS +N+L GDNG+GKTSVLEA+HL+ RSFR +
Sbjct: 1 MHVVRLSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60
Query: 61 IQYEEAACTVFGQVMLANGIA----SNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQ 116
IQ VF + G A G+ Q E+T R+DG++ L L +
Sbjct: 61 IQQGANDLEVFVEWKEGGGAAVERTRRAGLRHSGQ-EWTGRLDGEDVAQLGSLCAALAVV 119
Query: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176
P S L+ G + RR+FLDWG+FHVEP FL +W+R +AL+QRN+ L+ G P
Sbjct: 120 TFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQG-AQPRML 178
Query: 177 AAWDRELSLASDEIDAYRRSYIQALK----PVFEETLAELVSLDDLTLSYYRGWDK-DRD 231
AWD EL+ + + + + R Y++ L+ PV + +A + L LT + GW + +
Sbjct: 179 DAWDNELAESGETLTSRRMRYLERLQDRLVPV-ADAIAPALGLSALT--FAPGWKRHEVS 235
Query: 232 LLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLI 291
L + L + RD+Q G+T GP RAD + LSRGQ KL A +AQ
Sbjct: 236 LADALLLARERDRQNGYTSQGPHRADWMPSFHALPGKDALSRGQAKLTALACLLAQAEDF 295
Query: 292 NRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVD-PQLLKDGWRTDTPVS 350
+ V +DDL SELD H+ + + L QV IT + P L D +
Sbjct: 296 AFERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLAD---AAALLQ 352
Query: 351 MFHVEHGKVSQTTTI 365
FHVEHG++++ T+
Sbjct: 353 QFHVEHGQIARQATV 367
>gb|AAO27911.1| (AE012553) DNA replication and repair RecF protein [Xylella
fastidiosa Temecula1]
Length = 364
Score = 190 bits (483), Expect = 1e-47
Identities = 123/367 (33%), Positives = 192/367 (52%), Gaps = 11/367 (2%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M +T++ + R V P P +N G+NGSGKTS+LEA+HL+G RSFR +
Sbjct: 1 MHITQLVLRHFRCFDVVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60
Query: 61 IQYEEAACTVF---GQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQL 117
I++ +F + L N G+S Q E+ R+DGQ A L L +
Sbjct: 61 IRHGSENLEIFVDWQETALINARRRRAGLSHYGQ-EWIGRLDGQKIMHLASLCAALAVIT 119
Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQA 177
S++L+ ++RR+FLDWG+FHVEP FL +W+R L+QRNS L+ K + A
Sbjct: 120 FESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQ-KEELAMLE 178
Query: 178 AWDRELSLASDEIDAYRRSYIQALKPVFEETLAELV-SLDDLTLSYYRGWDK-DRDLLEV 235
AWD++LS +++ R Y++ LK ++ + +L ++ GW + + L++
Sbjct: 179 AWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRITPNLKIHGFNFNHGWRRHELPLIDA 238
Query: 236 LASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAK 295
L S RD Q G+T GP R+D + + LSRGQ KL+ +AQ +
Sbjct: 239 LFISRERDYQYGYTSLGPHRSDWTPQFSSIPGVHFLSRGQGKLITLMCLLAQAQDFFDQR 298
Query: 296 RGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVD-PQLLKDGWRTDTPVSMFHV 354
+ +DDL SELD++H+ + +L ++ QV IT + PQ LK + +MFHV
Sbjct: 299 GEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPFFSVG---AMFHV 355
Query: 355 EHGKVSQ 361
EHG +++
Sbjct: 356 EHGAITR 362
>gb|AAF82816.1|AE003855_3 (AE003855) DNA replication and repair RecF protein [Xylella
fastidiosa 9a5c]
Length = 364
Score = 190 bits (483), Expect = 1e-47
Identities = 124/367 (33%), Positives = 193/367 (52%), Gaps = 11/367 (2%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M +T++ + R V P P +N G+NGSGKTS+LEA+HL+G RSFR +
Sbjct: 1 MHITQLVLRHFRCFDAVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60
Query: 61 IQYEEAACTVF---GQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQL 117
I++ +F + L N G+S Q E+ R+DGQ A L L +
Sbjct: 61 IRHGSENLEIFVDWQETDLINARRRRAGLSHYGQ-EWIGRLDGQKIMHLATLCAALAVIT 119
Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQA 177
S++L+ ++RR+FLDWG+FHVEP FL +W+ L+QRNS L+ K + A
Sbjct: 120 FESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQ-KEELAMLE 178
Query: 178 AWDRELSLASDEIDAYRRSYIQALKPVFEETLAELV-SLDDLTLSYYRGWDK-DRDLLEV 235
AWD++LS +++ R Y++ LK ++ + +L L++ GW + + L++
Sbjct: 179 AWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRITPNLKIHGLNFNHGWRRHELPLIDA 238
Query: 236 LASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRAK 295
L S RD Q G+T GP R+D + A +LSRGQ KL+ +AQ +
Sbjct: 239 LFISRERDYQYGYTSLGPHRSDWTPQFASIPGVHVLSRGQGKLITLMCLLAQAQDFFDQR 298
Query: 296 RGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVD-PQLLKDGWRTDTPVSMFHV 354
+ +DDL SELD++H+ + +L ++ QV IT + PQ LK + +MFHV
Sbjct: 299 GEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPYFSVG---AMFHV 355
Query: 355 EHGKVSQ 361
EHG +++
Sbjct: 356 EHGAITR 362
>gb|AAM39322.1| (AE012093) DNA replication and repair RecF protein [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 368
Score = 190 bits (482), Expect = 1e-47
Identities = 126/370 (34%), Positives = 189/370 (51%), Gaps = 12/370 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + R+S+ +R V P+ +N+L GDNG+GKTSVLEA+H++ RSFR +
Sbjct: 1 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 60
Query: 61 IQYEEAACTVFGQVMLANGIASN----LGISRERQGEFTIRIDGQNARSAAQLAETLPLQ 116
I+ +F + G ++ G+ Q E+T R+DG++ L L +
Sbjct: 61 IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQ-EWTGRLDGEDVAQLGSLCAALAVV 119
Query: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176
P S L+ G + RR+FLDWG+FHVEP FL +W+R +AL+QRN+ L+ G P
Sbjct: 120 TFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQML 178
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKP-VFEETLAELVSLDDLTLSYYRGWDK-DRDLLE 234
AWD EL+ + + + + R Y++ L+ + A SL L++ GW + + L +
Sbjct: 179 DAWDHELAESGETLTSRRLQYLERLQERLVPVATAIAPSLGLSALTFAPGWRRHEVSLAD 238
Query: 235 VLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRA 294
L + RD+Q G+T GP RAD + LSRGQ KL A +AQ
Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDALSRGQAKLTALACLLAQAEDFAHE 298
Query: 295 KRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVD-PQLLKDGWRTDTPVSMFH 353
+ + +DDL SELD H+ + + L QV IT + P L D +T + FH
Sbjct: 299 RGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKT---LRRFH 355
Query: 354 VEHGKVSQTT 363
VEHG++ TT
Sbjct: 356 VEHGQLVPTT 365
>gb|AAL30091.1| (AY057934) RecF protein [Xanthomonas campestris pv. campestris]
Length = 391
Score = 187 bits (475), Expect = 9e-47
Identities = 125/370 (33%), Positives = 188/370 (50%), Gaps = 12/370 (3%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + R+S+ +R V P+ +N+L GDNG+GKTSVLEA+H++ RSF +
Sbjct: 24 MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFLGRVRDGL 83
Query: 61 IQYEEAACTVFGQVMLANGIASN----LGISRERQGEFTIRIDGQNARSAAQLAETLPLQ 116
I+ +F + G ++ G+ Q E+T R+DG++ L L +
Sbjct: 84 IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQ-EWTGRLDGEDVAQLGSLCAALAVV 142
Query: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176
P S L+ G + RR+FLDWG+FHVEP FL +W+R +AL+QRN+ L+ G P
Sbjct: 143 TFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQML 201
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKP-VFEETLAELVSLDDLTLSYYRGWDK-DRDLLE 234
AWD EL+ + + + + R Y++ L+ + A SL L++ GW + + L +
Sbjct: 202 DAWDHELAESGETLTSRRLQYLERLQERLVPVATAIAPSLGLSALTFAPGWRRHEVSLAD 261
Query: 235 VLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLINRA 294
L + RD+Q G+T GP RAD + LSRGQ KL A +AQ
Sbjct: 262 ALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDALSRGQAKLTALACLLAQAEDFAHE 321
Query: 295 KRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVD-PQLLKDGWRTDTPVSMFH 353
+ + +DDL SELD H+ + + L QV IT + P L D +T + FH
Sbjct: 322 RGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKT---LRRFH 378
Query: 354 VEHGKVSQTT 363
VEHG++ TT
Sbjct: 379 VEHGQLVPTT 388
>emb|CAA32895.1| (X14791) unnamed protein product [Pseudomonas putida]
Length = 99
Score = 166 bits (420), Expect = 2e-40
Identities = 83/99 (83%), Positives = 88/99 (88%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
MSL R+ VTAVRNLHPVTL PSPRINILYG NGSGKTSVLEA+HLLGLARSFRS RL PV
Sbjct: 1 MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRID 99
IQYE+AACTVFG+V L G SNLG+SRERQGEFTIRID
Sbjct: 61 IQYEQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIRID 99
>gb|AAM80462.1| (AE014172) RecF protein [Streptococcus pyogenes MGAS315]
Length = 368
Score = 129 bits (324), Expect = 3e-29
Identities = 103/370 (27%), Positives = 180/370 (48%), Gaps = 20/370 (5%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + + + RN + S S +N+ G+N GKT+ LEAI+ L L RS R+ + +
Sbjct: 1 MWIKELELKHYRNYDQLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSQRTRADKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAE---TLPLQL 117
I ++ + ++ G++ +G +L I+ +G R+ NA A+L++ T+ + L
Sbjct: 61 IHFDHSTVSLTGKIQRISGTV-DLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115
Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHG-KLDPASQ 176
P+ +L++GAP +RR+F+D + ++P +L L+QRNS+L+ ++D A
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175
Query: 177 AAWDRELSLASDEIDAYRRSYIQAL-KPVFEETLAELVSLDDLTLSYYRG--WDKDRDLL 233
A D +L+ + +R +I AL K A L+ L+LSY +DK ++
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIY 235
Query: 234 EVLASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGH 289
+ L ++ Q +T GP R DL + G N A S+GQ + ++ +L++A+
Sbjct: 236 QQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN-ANFASQGQHRSLILSLKMAEVS 294
Query: 290 LINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPV 349
L+ + L+DD+ SELD + L + Q FIT L + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLS---QLPEGI 351
Query: 350 SMFHVEHGKV 359
+FHV G V
Sbjct: 352 RIFHVTKGTV 361
>gb|AAL98671.1| (AE010124) recF protein [Streptococcus pyogenes MGAS8232]
Length = 368
Score = 129 bits (324), Expect = 3e-29
Identities = 104/376 (27%), Positives = 182/376 (48%), Gaps = 20/376 (5%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + + + RN + S S +N+ G+N GKT+ LEAI+ L L RS R+ + +
Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAE---TLPLQL 117
I ++ + ++ G++ +G +L I+ +G R+ NA A+L++ T+ + L
Sbjct: 61 IHFDHSTVSLTGKIQRISGTV-DLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115
Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHG-KLDPASQ 176
P+ +L++GAP +RR+F+D + ++P +L L+QRNS+L+ ++D A
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175
Query: 177 AAWDRELSLASDEIDAYRRSYIQAL-KPVFEETLAELVSLDDLTLSYYRG--WDKDRDLL 233
A D +L+ + +R +I AL K A L+ L+LSY +DK ++
Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIY 235
Query: 234 EVLASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGH 289
+ L ++ Q +T GP R DL + G N A S+GQ + ++ +L++A+
Sbjct: 236 QQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN-ANFASQGQHRSLILSLKMAEVS 294
Query: 290 LINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPV 349
L+ + L+DD+ SELD + L + Q FIT L + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLS---QLPEGI 351
Query: 350 SMFHVEHGKVSQTTTI 365
+FHV G V + I
Sbjct: 352 RIFHVTKGTVQVDSDI 367
>dbj|BAC64946.1| (AP005146) RecF protein [Streptococcus pyogenes SSI-1]
Length = 368
Score = 129 bits (324), Expect = 3e-29
Identities = 103/370 (27%), Positives = 180/370 (48%), Gaps = 20/370 (5%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + + + RN + S S +N+ G+N GKT+ LEAI+ L L RS R+ + +
Sbjct: 1 MWIKELELKHYRNYDQLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSQRTRADKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAE---TLPLQL 117
I ++ + ++ G++ +G +L I+ +G R+ NA A+L++ T+ + L
Sbjct: 61 IHFDHSTVSLTGKIQRISGTV-DLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115
Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHG-KLDPASQ 176
P+ +L++GAP +RR+F+D + ++P +L L+QRNS+L+ ++D A
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175
Query: 177 AAWDRELSLASDEIDAYRRSYIQAL-KPVFEETLAELVSLDDLTLSYYRG--WDKDRDLL 233
A D +L+ + +R +I AL K A L+ L+LSY +DK ++
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIY 235
Query: 234 EVLASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGH 289
+ L ++ Q +T GP R DL + G N A S+GQ + ++ +L++A+
Sbjct: 236 QQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN-ANFASQGQHRSLILSLKMAEVS 294
Query: 290 LINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPV 349
L+ + L+DD+ SELD + L + Q FIT L + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLS---QLPEGI 351
Query: 350 SMFHVEHGKV 359
+FHV G V
Sbjct: 352 RIFHVTKGTV 361
>gb|AAA85783.1| (U07342) RecF protein [Streptococcus pyogenes]
Length = 368
Score = 129 bits (323), Expect = 4e-29
Identities = 103/370 (27%), Positives = 180/370 (48%), Gaps = 20/370 (5%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + + + RN + S S +N+ G+N GKT+ LEAI+ L L RS R+ + +
Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAE---TLPLQL 117
I ++ + ++ G++ +G +L I+ +G R+ NA A+L++ T+ + L
Sbjct: 61 IHFDHSTVSLTGKIQRISGTV-DLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115
Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHG-KLDPASQ 176
P+ +L++GAP +RR+F+D + ++P +L L+QRNS+L+ ++D A
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175
Query: 177 AAWDRELSLASDEIDAYRRSYIQAL-KPVFEETLAELVSLDDLTLSYYRG--WDKDRDLL 233
A D +L+ + +R +I AL K A L+ L+LSY +DK ++
Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIY 235
Query: 234 EVLASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGH 289
+ L ++ Q +T GP R DL + G N A S+GQ + ++ +L++A+
Sbjct: 236 QQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN-ANFASQGQHRSLILSLKMAEVS 294
Query: 290 LINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPV 349
L+ + L+DD+ SELD + L + Q FIT L + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLS---QLPEGI 351
Query: 350 SMFHVEHGKV 359
+FHV G V
Sbjct: 352 RIFHVTKGTV 361
>gb|AAK34832.1| (AE006637) RecF protein [Streptococcus pyogenes M1 GAS]
Length = 368
Score = 128 bits (321), Expect = 6e-29
Identities = 102/370 (27%), Positives = 180/370 (48%), Gaps = 20/370 (5%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + + + RN + S S +N+ G+N GKT+ LEAI+ L L RS R+ + +
Sbjct: 1 MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAE---TLPLQL 117
I ++ + ++ G++ +G +L I+ +G R+ NA A+L++ T+ + L
Sbjct: 61 IHFDHSTVSLTGKIQRISGTV-DLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115
Query: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHG-KLDPASQ 176
P+ +L++GAP +RR+F+D + ++P +L L+QRNS+L+ ++D A
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175
Query: 177 AAWDRELSLASDEIDAYRRSYIQAL-KPVFEETLAELVSLDDLTLSYYRG--WDKDRDLL 233
A D +L+ + +R +I AL K A L+ L+LSY +DK ++
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIY 235
Query: 234 EVLASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGH 289
+ L ++ Q +T GP R +L + G N A S+GQ + ++ +L++A+
Sbjct: 236 QQFLHQLEKNHQKDFFRKNTSVGPHRDELAFYINGMN-ANFASQGQHRSLILSLKMAEVS 294
Query: 290 LINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPV 349
L+ + L+DD+ SELD + L + Q FIT L + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLS---QLPEGI 351
Query: 350 SMFHVEHGKV 359
+FHV G V
Sbjct: 352 RIFHVTKGTV 361
>dbj|BAB03723.1| (AP001507) DNA repair and genetic recombination [Bacillus
halodurans]
Length = 371
Score = 128 bits (321), Expect = 6e-29
Identities = 103/390 (26%), Positives = 187/390 (47%), Gaps = 50/390 (12%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + R+++ RN + +S P +N++ G+N GKT+V+EAI+ L LA+S R+AR + +
Sbjct: 1 MHIERLTLKQFRNYDELDVSFEPNVNVIIGENAQGKTNVIEAIYFLALAKSHRTARDKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQ+E + G NG S L + +G+ ++++G R + + + + P
Sbjct: 61 IQWEAPFARIEGAFQKQNGPLS-LHVVLSGKGK-KVKVNGLEQRRLSDYIGAVNVVMFGP 118
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRH--GKL--DPASQ 176
+ L++G+P+IRR+FLD + + P +L QK L QRN L+ GK DP
Sbjct: 119 EDLNLVKGSPQIRRRFLDMELGQMSPVYLHQLAMYQKILLQRNHLLKQLFGKANSDPMLD 178
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEET--------------------LAELVSLD 216
D+ + +A E+ R +IQ L+ EE ++E ++L
Sbjct: 179 VLTDQLIEVAV-EVTKKRFEFIQLLQRWAEEIHQAISRGKEKLVITYEPSVHVSEQLNLS 237
Query: 217 DLTLSYYRGWDKDRDLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQ 276
L +Y+ +++ ++ R++Q G T GP R DL + + S+GQQ
Sbjct: 238 KLREGFYQAYEQKKE----------RERQRGTTLFGPHRDDLVFFVNDKDVQTYGSQGQQ 287
Query: 277 KLVVCALRIAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITC--- 333
+ +L++A+ L+ + L+DD+ SELD+ + L ++ Q F+T
Sbjct: 288 RTTALSLKLAEIELMKETVGDYPILLLDDVLSELDDYRQSHLLHAIQH-RVQTFVTTTNV 346
Query: 334 --VDPQLLKDGWRTDTPVSMFHVEHGKVSQ 361
+D Q L++ +++ VE G + +
Sbjct: 347 DGIDHQTLQE-------ATIYEVEQGSLKK 369
>dbj|BAA82688.1| (AB013492) 63%-identity [Bacillus halodurans]
Length = 371
Score = 128 bits (321), Expect = 6e-29
Identities = 103/390 (26%), Positives = 187/390 (47%), Gaps = 50/390 (12%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + R+++ RN + +S P +N++ G+N GKT+V+EAI+ L LA+S R+AR + +
Sbjct: 1 MHIERLTLKQFRNYDELDVSFEPNVNVIIGENAQGKTNVIEAIYFLALAKSHRTARDKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
IQ+E + G NG S L + +G+ ++++G R + + + + P
Sbjct: 61 IQWEAPFARIEGAFQKQNGPLS-LHVVLSGKGK-KVKVNGLEQRRLSDYIGAVNVVMFGP 118
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRH--GKL--DPASQ 176
+ L++G+P+IRR+FLD + + P +L QK L QRN L+ GK DP
Sbjct: 119 EDLNLVKGSPQIRRRFLDMELGQMSPVYLHQLAMYQKILLQRNHLLKQLFGKANSDPMLD 178
Query: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEET--------------------LAELVSLD 216
D+ + +A E+ R +IQ L+ EE ++E ++L
Sbjct: 179 VLTDQLIEVAV-EVTKKRFEFIQLLQRWAEEIHQAISRGKEKLVITYEPSVHVSEQLNLS 237
Query: 217 DLTLSYYRGWDKDRDLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQ 276
L +Y+ +++ ++ R++Q G T GP R DL + + S+GQQ
Sbjct: 238 KLREGFYQAYEQKKE----------RERQRGTTLFGPHRDDLVFFVNDKDVQTYGSQGQQ 287
Query: 277 KLVVCALRIAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITC--- 333
+ +L++A+ L+ + L+DD+ SELD+ + L ++ Q F+T
Sbjct: 288 RTTALSLKLAEIELMKETVGDYPILLLDDVLSELDDYRQSHLLHAIQH-RVQTFVTTTNV 346
Query: 334 --VDPQLLKDGWRTDTPVSMFHVEHGKVSQ 361
+D Q L++ +++ VE G + +
Sbjct: 347 DGIDHQTLQE-------ATIYEVEQGSLKK 369
>gb|AAN01014.1|AE014289_14 (AE014289) recF protein [Streptococcus agalactiae 2603V/R]
Length = 369
Score = 124 bits (312), Expect = 7e-28
Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 15/368 (4%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + +S+ RN + SP +NI G N GKT+ LEAI+ L L RS R+ + +
Sbjct: 1 MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
+ ++ + G+V+ +G NL I +G T +++ + + + L P
Sbjct: 61 VHFKHHDVQITGEVIRKSG-HLNLDIQLSEKGRIT-KVNHLKQAKLSDYIGAMTVVLFAP 118
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR-HGKLDPASQAAW 179
+ +L++GAP +RR+FLD + ++P +L L+QRN++L+ +D
Sbjct: 119 EDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTVL 178
Query: 180 DRELSLASDEIDAYRRSYIQALKPVFEETLAEL-VSLDDLTLSYYRG---WDKD---RDL 232
D +L+ + +R +IQAL ++ + L+ L++ Y DK
Sbjct: 179 DEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHF 238
Query: 233 LEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLIN 292
L L+ S RD +T GP R D+ + NA S+GQQ+ ++ +L++A+ LI
Sbjct: 239 LNQLSKSHSRDIFKKNTSIGPHRDDITFFINDINAT-FASQGQQRSLILSLKLAEIELIK 297
Query: 293 RAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMF 352
+ L+DD+ SELD ++ L +++ Q FIT + L + +F
Sbjct: 298 TVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLS---ALPDQLKIF 353
Query: 353 HVEHGKVS 360
+V G +S
Sbjct: 354 NVSDGTIS 361
>emb|CAD47774.1| (AL766856) Unknown [Streptococcus agalactiae NEM316]
Length = 369
Score = 124 bits (312), Expect = 7e-28
Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 15/368 (4%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M + +S+ RN + SP +NI G N GKT+ LEAI+ L L RS R+ + +
Sbjct: 1 MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
+ ++ + G+V+ +G NL I +G T +++ + + + L P
Sbjct: 61 VHFKHHDVQITGEVIRKSG-HLNLDIQLSEKGRIT-KVNHLKQAKLSDYIGAMTVVLFAP 118
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLR-HGKLDPASQAAW 179
+ +L++GAP +RR+FLD + ++P +L L+QRN++L+ +D
Sbjct: 119 EDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTVL 178
Query: 180 DRELSLASDEIDAYRRSYIQALKPVFEETLAEL-VSLDDLTLSYYRG---WDKD---RDL 232
D +L+ + +R +IQAL ++ + L+ L++ Y DK
Sbjct: 179 DEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHF 238
Query: 233 LEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQGHLIN 292
L L+ S RD +T GP R D+ + NA S+GQQ+ ++ +L++A+ LI
Sbjct: 239 LNQLSKSHSRDIFKKNTSIGPHRDDITFFINDINAT-FASQGQQRSLILSLKLAEIELIK 297
Query: 293 RAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDTPVSMF 352
+ L+DD+ SELD ++ L +++ Q FIT + L + +F
Sbjct: 298 TVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLS---ALPDQLKIF 353
Query: 353 HVEHGKVS 360
+V G +S
Sbjct: 354 NVSDGTIS 361
>gb|AAM23321.1| (AE012974) Recombinational DNA repair ATPase [Thermoanaerobacter
tengcongensis]
Length = 364
Score = 122 bits (306), Expect = 3e-27
Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 15/344 (4%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M L + V RNL L +N++YG N GK+++LEAI LL + RSFR +++ +
Sbjct: 1 MYLKEIFVDNFRNLKKQKLEFCEGVNLIYGLNAQGKSNLLEAIRLLSMGRSFRGSKMSEL 60
Query: 61 IQYEEAACTVFGQVMLANGIASNLGISRERQGEFTIRIDGQNARSAAQLAETLPLQLINP 120
++++E V G V A+ + + G I+++G +S ++ + +P
Sbjct: 61 VKFDEEYFYVRGLVRSADFYEKKIEFGYKVNGNKVIKVNGNKLKSTGEILGHFLTVIFSP 120
Query: 121 DSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ---A 177
+ +++ P RR++LD + ++ + + K L RNS L+ K + +
Sbjct: 121 EDIEIIKEGPSRRRKYLDACISVIDKNYFFDLLQYNKTLSNRNSLLKKIKEEGKGEDLLE 180
Query: 178 AWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKD-------- 229
+D +L+ I R +Y++ LK + L E +S + L + Y
Sbjct: 181 IFDEKLAEYGARIIKVRNNYLEKLKNSMSKFLME-ISNEKLEIIYLNSAGVKEVHEENLI 239
Query: 230 -RDLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHNAAEILSRGQQKLVVCALRIAQG 288
L L SL D + TQ GP R D +I + G+++ S+GQ++ L++++
Sbjct: 240 REKLKNRLTKSLTLDLKYLSTQVGPHREDFKILINGYDSRVYSSQGQKRTAALCLKLSEL 299
Query: 289 HLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFIT 332
++ + V L+DD+ SELD+ + + + LE G Q FIT
Sbjct: 300 EILEEETGEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFIT 341
>gb|AAL94212.1| (AE010515) RECF protein [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
Length = 369
Score = 122 bits (305), Expect = 5e-27
Identities = 94/381 (24%), Positives = 174/381 (45%), Gaps = 30/381 (7%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
M ++ +S RNL ++ S +IN+ YG N GKTS+LEAI+ SF++ + +
Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60
Query: 61 IQY--EEAACTVFGQVMLANGIAS----NLGISRERQGEFTIRIDGQNARSAAQLAETLP 114
I+Y +E ++ Q +AN S N+ +++ RI + + +P
Sbjct: 61 IKYNFDEFISSISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGKINIIAYIP 120
Query: 115 LQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPA 174
+I L+ G+PK RR F D + ++ +L + K L+ RN +L+ K +
Sbjct: 121 EDII------LINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSE 174
Query: 175 SQAAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSL-DDLTLSYYRGWDKDRDL- 232
A +++E + I R Y+++L + +L ++ +L L Y DK +
Sbjct: 175 EFAIYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVT 234
Query: 233 LEVLASSLLRDQQMGHTQ--------AGPQRADLRIRLAGHNAAEILSRGQQKLVVCALR 284
+E++ SL R+ Q GP + D + L GH A S+G++K ++ +L+
Sbjct: 235 IEMIQESLKREISQKKYQEDKYKFSLVGPHKDDYKFLLNGHEAKISASQGEKKSIIFSLK 294
Query: 285 IAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWR 344
+++ +I + ++ V ++DD+ S DE R ++ QV I+ D +
Sbjct: 295 LSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTD--------K 346
Query: 345 TDTPVSMFHVEHGKVSQTTTI 365
D F+VE G + + I
Sbjct: 347 LDIEAKNFYVEKGIIKDESNI 367
>gb|AAL41098.1| (AE008981) DNA replication and repair protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 376
Score = 122 bits (305), Expect = 5e-27
Identities = 113/376 (30%), Positives = 169/376 (44%), Gaps = 22/376 (5%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
+SL+R+ +T RN L R +L GDNGSGKT++LEA+ L R R A L V
Sbjct: 6 VSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAVLSDV 65
Query: 61 --IQYEEAACTVFGQVMLANGIASNLGISRERQGEFT---IRIDGQNARSAAQLAETLPL 115
+ E ++F V +G + +G E GE +R++G +S +L + L +
Sbjct: 66 TRVGAEATGFSIFADVDGMDGEVA-IGTGIEGDGEVVSRRLRLNGTPVKSVDELTDHLRV 124
Query: 116 QLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPAS 175
+ P L G+ RR+FLD V ++P +KA+R RN L G+ DP
Sbjct: 125 LWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFDPVW 184
Query: 176 QAAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDR----- 230
+++++ + R + LK + E A + TLS G+ DR
Sbjct: 185 LDGIEKQMAELGISMAVARYEMLGLLKTLIEGR-AGNAAFPSATLS-LAGFMDDRLNRPA 242
Query: 231 -DLLE----VLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALR 284
DL + +L RD G T GP R DL +R A N AE S G+QK ++ L
Sbjct: 243 VDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGLV 302
Query: 285 IAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWR 344
+A L V L+D++ + LDE R AL L+ LG Q F+T D +
Sbjct: 303 LAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFS---A 359
Query: 345 TDTPVSMFHVEHGKVS 360
F+V HG ++
Sbjct: 360 LGERAQFFNVSHGGIT 375
>gb|AAK85892.1| (AE007949) AGR_C_109p [Agrobacterium tumefaciens str. C58 (Cereon)]
Length = 376
Score = 122 bits (305), Expect = 5e-27
Identities = 113/376 (30%), Positives = 169/376 (44%), Gaps = 22/376 (5%)
Query: 1 MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60
+SL+R+ +T RN L R +L GDNGSGKT++LEA+ L R R A L V
Sbjct: 6 VSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAVLSDV 65
Query: 61 --IQYEEAACTVFGQVMLANGIASNLGISRERQGEFT---IRIDGQNARSAAQLAETLPL 115
+ E ++F V +G + +G E GE +R++G +S +L + L +
Sbjct: 66 TRVGAEATGFSIFADVDGMDGEVA-IGTGIEGDGEVVSRRLRLNGTPVKSVDELTDHLRV 124
Query: 116 QLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPAS 175
+ P L G+ RR+FLD V ++P +KA+R RN L G+ DP
Sbjct: 125 LWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFDPVW 184
Query: 176 QAAWDRELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDR----- 230
+++++ + R + LK + E A + TLS G+ DR
Sbjct: 185 LDGIEKQMAELGISMAVARYEMLGLLKTLIEGR-AGNAAFPSATLS-LAGFMDDRLNRPA 242
Query: 231 -DLLE----VLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALR 284
DL + +L RD G T GP R DL +R A N AE S G+QK ++ L
Sbjct: 243 VDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGLV 302
Query: 285 IAQGHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWR 344
+A L V L+D++ + LDE R AL L+ LG Q F+T D +
Sbjct: 303 LAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFS---A 359
Query: 345 TDTPVSMFHVEHGKVS 360
F+V HG ++
Sbjct: 360 LGERAQFFNVSHGGIT 375
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,380,128
Number of Sequences: 559965
Number of extensions: 4408711
Number of successful extensions: 19657
Number of sequences better than 1.0e-02: 100
Number of HSP's better than 0.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 19288
Number of HSP's gapped (non-prelim): 130
length of query: 369
length of database: 168,382,221
effective HSP length: 118
effective length of query: 251
effective length of database: 102,306,351
effective search space: 25678894101
effective search space used: 25678894101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 96 (41.6 bits)