RPS-BLAST 2.2.9 [May-01-2004]
Query= local sequence: lcl|tmpseq_0 unnamed protein product
(168 letters)
Database: cdd.v2.00
 .. This CD alignment includes 3D structure. To display structure, download
Cn3D!
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PSSMs producing significant alignments: |
Score
(bits) |
E
value |
| |
|
gnl|CDD|25734 |
pfam01327, Pep_deformylase, Polypeptide deformylase |
178 |
4e-46 |
|
gnl|CDD|10117 |
COG0242, Def, N-formylmethionyl-tRNA deformylase [Translation,... |
235 |
3e-63 |
|
gnl|CDD|25734, pfam01327, Pep_deformylase, Polypeptide deformylase.
|
CD-Length = 154 residues, 99.4% aligned
Score = 178 bits (452), Expect = 4e-46
Query: 3 ILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Sbjct: 1 VLPIRIDGDPVLRKPAKPVTKVDDELKKLIDDMLETMYAAPGVGLAAPQIGISKRLIVID 60
Query: 63 LSEDKS--EPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Sbjct: 61 VEDDRPAEGPLVLINPKILEHSGEKCTGGEGCLSVPEVYGYVPRAERITVTGLDEEGEPI 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKR 153
Sbjct: 121 TIEATGLFARCIQHEIDHLNGVLFYDRINPLKP 153
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gnl|CDD|10117, COG0242, Def, N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis]
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CD-Length = 168 residues, 100.0% aligned
Score = 235 bits (600), Expect = 3e-63
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Sbjct: 1 MAIREIVKYPDPRLRQVAKPVEEVDDELRQLIDDMLETMYAAEGVGLAAPQIGISKRIFV 60
Query: 61 MDLSED---KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDG 117
Sbjct: 61 IDVEEDGRPKEPPLVLINPEIISKSEETLTGEEGCLSVPGVRGEVERPERITVKYLDRNG 120
Query: 118 NPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
Sbjct: 121 KPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLKKKLKKLKK 168
Citing CD-Search:
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR,
Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA,
Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, and Bryant SH (2003),
"CDD: a curated Entrez database of conserved domain alignments",
Nucleic Acids Res. 31:383-387.
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