RPS-BLAST 2.2.9 [May-01-2004]
Query= local sequence: lcl|tmpseq_0 unnamed protein product
(295 letters)
Database: cdd.v2.00
PSSMs producing significant alignments: |
Score (bits) |
E value |
  |
gnl|CDD|5038 |
pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis acy... |
159 |
4e-40 |
gnl|CDD|11273 |
COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelop... |
290 |
1e-79 |
gnl|CDD|5038, pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis acyltransferase.
CD-Length = 295 residues, 93.9% aligned
Score = 159 bits (404), Expect = 4e-40
Query: 8 LVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSETELEKLVG 67
Sbjct: 18 LGIGVLRLLAALPYSALRRLGKGLGRLAGRFGKRRRKIARKNLALCFPEMSEAEREKIID 77
Query: 68 QSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDGLVGITSHLGNWEVL 127
Sbjct: 78 QSLASFGMAILETAELAFRPDSKIAKRT-EVIGLENIKKALAQGRGVILLVPHFGNWDLP 136
Query: 128 NHFYCSYAKPIIFYRPPKLKA-VDELLKKQRVQLGNRVAPSTPEGILSVIKEVKKGGCVG 186
Sbjct: 137 GLVLAQYYPGMATMFPNLKNPLLDWLITSGRERFGGKMLPRK-NGIKGLIKALRQGEVVY 195
Query: 187 IPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGYKVILEAA 246
Sbjct: 196 YLPDQDLGPKDSVFVPFFGTPKATTTSPAKLARKTGAAVIPVFPWRNGDGSGYTAIVHPA 255
Query: 247 PADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRFK 285
Sbjct: 256 LDLTPTEDVEQIAQAMNKIVEKFIAPHPEQYMWLHRRWK 294
gnl|CDD|11273, COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
CD-Length = 308 residues, 95.8% aligned
Score = 290 bits (745), Expect = 1e-79
Query: 1 MEKFKGALVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSET 60
Sbjct: 13 PRYWLTWLGVGALWLLVLLPYPFLRRLGDGLGRLAGRLLKRRRKIARRNLALCFPEKSEA 72
Query: 61 ELEKLVGQSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDGLVGITSH 120
Sbjct: 73 EREKIVKESFASMGRALLETGMAWFRPPERILR-RVEVEGLEHLEEALANGRGVILVTPH 131
Query: 121 LGNWEVLNHFYCSYAKPII-FYRPPKLKAVDELLKKQRVQLGNRVAPSTPEGILSVIKEV 179
Sbjct: 132 FGNWELGGRALAQQGPKVTAMYRPPKNPLLDWLITRGRERFGGRLLPRKGEGIRQLIKAL 191
Query: 180 KKGGCVGIPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGY 239
Sbjct: 192 KQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVFPVRNPDGSGY 251
Query: 240 KVILEAAPADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRFKNRPDGEKKWY 295
Sbjct: 252 TLHIHPPMTDDPSEDVEADAQRMNDFVEKWIRAHPEQYMWLHRRFKTRPEGEPSLY 307
Citing CD-Search:
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR,
Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA,
Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, and Bryant SH (2003),
"CDD: a curated Entrez database of conserved domain alignments",
Nucleic Acids Res. 31:383-387.
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