NCBI Conserved Domain Search
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RPS-BLAST 2.2.9 [May-01-2004] Query= local sequence: lcl|tmpseq_0 unnamed protein product (295 letters) Database: cdd.v2.00
gnl|CDD|5038 pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis acyltransferase gnl|CDD|11273 COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
 Domain Relatives
PSSMs producing significant alignments: Score
(bits)
E
value
 
gnl|CDD|5038 pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis acy... 159 4e-40
gnl|CDD|11273 COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelop... 290 1e-79


gnl|CDD|5038, pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis acyltransferase.
             CD-Length = 295 residues,  93.9% aligned
             Score =  159 bits (404), Expect = 4e-40
Query:  8    LVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSETELEKLVG  67
Sbjct:  18   LGIGVLRLLAALPYSALRRLGKGLGRLAGRFGKRRRKIARKNLALCFPEMSEAEREKIID  77

Query:  68   QSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDGLVGITSHLGNWEVL  127
Sbjct:  78   QSLASFGMAILETAELAFRPDSKIAKRT-EVIGLENIKKALAQGRGVILLVPHFGNWDLP  136

Query:  128  NHFYCSYAKPIIFYRPPKLKA-VDELLKKQRVQLGNRVAPSTPEGILSVIKEVKKGGCVG  186
Sbjct:  137  GLVLAQYYPGMATMFPNLKNPLLDWLITSGRERFGGKMLPRK-NGIKGLIKALRQGEVVY  195

Query:  187  IPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGYKVILEAA  246
Sbjct:  196  YLPDQDLGPKDSVFVPFFGTPKATTTSPAKLARKTGAAVIPVFPWRNGDGSGYTAIVHPA  255

Query:  247  PADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRFK  285
Sbjct:  256  LDLTPTEDVEQIAQAMNKIVEKFIAPHPEQYMWLHRRWK  294


gnl|CDD|11273, COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
             CD-Length = 308 residues,  95.8% aligned
             Score =  290 bits (745), Expect = 1e-79
Query:  1    MEKFKGALVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSET  60
Sbjct:  13   PRYWLTWLGVGALWLLVLLPYPFLRRLGDGLGRLAGRLLKRRRKIARRNLALCFPEKSEA  72

Query:  61   ELEKLVGQSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDGLVGITSH  120
Sbjct:  73   EREKIVKESFASMGRALLETGMAWFRPPERILR-RVEVEGLEHLEEALANGRGVILVTPH  131

Query:  121  LGNWEVLNHFYCSYAKPII-FYRPPKLKAVDELLKKQRVQLGNRVAPSTPEGILSVIKEV  179
Sbjct:  132  FGNWELGGRALAQQGPKVTAMYRPPKNPLLDWLITRGRERFGGRLLPRKGEGIRQLIKAL  191

Query:  180  KKGGCVGIPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGY  239
Sbjct:  192  KQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVFPVRNPDGSGY  251

Query:  240  KVILEAAPADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRFKNRPDGEKKWY  295
Sbjct:  252  TLHIHPPMTDDPSEDVEADAQRMNDFVEKWIRAHPEQYMWLHRRFKTRPEGEPSLY  307

Citing CD-Search: Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR, Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA, Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, and Bryant SH (2003), "CDD: a curated Entrez database of conserved domain alignments", Nucleic Acids Res. 31:383-387.