RPS-BLAST 2.2.9 [May-01-2004]
Query= local sequence: lcl|tmpseq_0 unnamed protein product
(217 letters)
Database: cdd.v2.00
| PSSMs producing significant alignments: |
Score
(bits) |
E
value |
| |
| gnl|CDD|17175 |
pfam02592, DUF165, Uncharacterized ACR, YhhQ family COG1738 |
129 |
2e-31 |
| gnl|CDD|11449 |
COG1738, COG1738, Uncharacterized conserved protein [Function ... |
162 |
3e-41 |
gnl|CDD|17175, pfam02592, DUF165, Uncharacterized ACR, YhhQ family COG1738.
CD-Length = 155 residues, 100.0% aligned
Score = 129 bits (326), Expect = 2e-31
Query: 37 LFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQ---EA 93
Sbjct: 1 IFGFHATLGNVLFPFIFLATDLLVEIYGKKEARKAVFLGFLSQLIFLILMQIALHFPPSP 60
Query: 94 AFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR---SRHWWTAPVASTILG 150
Sbjct: 61 LDQGQEALKALFSPVPRIALASLIAYIISQILDVLLFNFLKRRFPGKHLWLRPNGSTLLS 120
Query: 151 NLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKL 187
Sbjct: 121 QLIDTFIFSFIAFYGS--VFPAAHWLEIMLFDYLFKL 155
gnl|CDD|11449, COG1738, COG1738, Uncharacterized conserved protein [Function unknown]
CD-Length = 233 residues, 94.4% aligned
Score = 162 bits (412), Expect = 3e-41
Query: 1 MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV 60
Sbjct: 14 FVLFGLAYRFFGLIGLAAWFALLIIISNILVQKPVEIFGFVLTWGAFLYPFIFLATDLTV 73
Query: 61 RLLGKGPARLVIARVMIPALIASYVVSVLFQ---EAAFRGFSALLEFNTFVARISLASFL 117
Sbjct: 74 EIYGKKEARKAVFLGFFSALVFSILTQIALHFPPSGSDEAQEALAALFSFVPRIALASLL 133
Query: 118 AYVLGQILDIQVFDRLRR---SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQH 174
Sbjct: 134 AYIVSQLLDVWVFNRLKRRTGGKSLWLRPNASTLVSQLIDTVIFFFIAFYVSPDGFMAE- 192
Query: 175 WVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQS 215
Sbjct: 193 WIEIIFGDYLVKLLIAVLDTPFVYGAVLWVLRKKLPEVTKI 233
Citing CD-Search:
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR,
Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA,
Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, and Bryant SH (2003),
"CDD: a curated Entrez database of conserved domain alignments",
Nucleic Acids Res. 31:383-387.
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