RPS-BLAST 2.2.9 [May-01-2004]
Query= local sequence: lcl|tmpseq_0 unnamed protein product
(183 letters)
Database: cdd.v2.00
 .. This CD alignment includes 3D structure. To display structure, download
Cn3D!
| |
PSSMs producing significant alignments: |
Score
(bits) |
E
value |
| |
|
gnl|CDD|15536 |
pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3... |
266 |
1e-72 |
|
gnl|CDD|12171 |
COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication... |
271 |
3e-74 |
|
gnl|CDD|15536, pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.
|
CD-Length = 180 residues, 100.0% aligned
Score = 266 bits (681), Expect = 1e-72
Query: 6 WCN-DDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFD 64
Sbjct: 1 WCTPKDPLYIAYHDEEWGVPLHDDKKLFELLCLEGFQAGLSWITILKKRERYREAFYGFD 60
Query: 65 VQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLEL----DDPAGFLWSFVGGQP 120
Sbjct: 61 PEKIARMTDKDIDRLMTDPGIIRNRAKIEAIVGNARAYLKIEQSYGSFSKFLWSFVNHKP 120
Query: 121 KINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQ 180
Sbjct: 121 TQSQFVDLSEVPTKTPEAKAISKDLKRRGFRFVGPTTCYAFMQAAGLVNDHLQDCFRYPE 180
|
gnl|CDD|12171, COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
|
CD-Length = 188 residues, 98.9% aligned
Score = 271 bits (695), Expect = 3e-74
Query: 1 MPRCFWC-NDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREV 59
Sbjct: 1 MNRCAWAGGLDPLYLAYHDTEWGVPLHDDQRLFELLCLEGFQAGLSWLTVLKKREAFREA 60
Query: 60 LFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDPAG----FLWSF 115
Sbjct: 61 FHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFLWSF 120
Query: 116 VGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDC 175
Sbjct: 121 VGGKPSRNQVNDGSEVPASTELSDAMSKALKKRGFKFVGPTTVYAFMQATGLVNDHAEGC 180
Query: 176 DRYAQL 181
Sbjct: 181 PCRREI 186
Citing CD-Search:
Marchler-Bauer A, Anderson JB, DeWeese-Scott C, Fedorova ND, Geer LY, He S, Hurwitz DI, Jackson JD, Jacobs AR,
Lanczycki CJ, Liebert CA, Liu C, Madej T, Marchler GH, Mazumder R, Nikolskaya AN, Panchenko AR, Rao BS, Shoemaker BA,
Simonyan V, Song JS, Thiessen PA, Vasudevan S, Wang Y, Yamashita RA, Yin JJ, and Bryant SH (2003),
"CDD: a curated Entrez database of conserved domain alignments",
Nucleic Acids Res. 31:383-387.
|
