RPS-BLAST 2.2.9 [May-01-2004]
Query= local sequence: lcl|tmpseq_0 unnamed protein product
         (684 letters)

Database: cdd.v2.00

	PSSMs producing significant alignments:		Score (bits)	E value
	gnl|CDD|5478	pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase beta subunit	593	3e-170
	gnl|CDD|26423	pfam05746, tRNA-synt_1d_C, DALR anticodon binding domain. This...	47.2	6e-06
	gnl|CDD|10619	COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translati...	888	0.0

             CD-Length = 551 residues,  98.7% aligned
             Score =  593 bits (1529), Expect = 3e-170

Query:  6    FLVELGTEELPPKALNSLGEAFLSGIEKGLKAAGLSYAAARFYAAPRRLAVLVEQLAVQQ  65
Sbjct:  1    FLLEIGTEELPAQFVNNAIQQLEDLLTALLNARGLAHGNVEIFGTPRRLALLVKDLAEEQ  60

Query:  66   PDRTVNLDGPPLQAAFDASGNPTQAALGFAKKCGVDLQQI-----DKSGPKLRFSQTIAG  120
Sbjct:  61   PEKEEEKKGPPASIAFDADGNPTKAAEGFAKKQGVSVEQLEILATDKGEEYLFVAKIEER  120

Query:  121  QPAAGLLPGIVEASLNELPIPKRMRWAARREEFVRPTQWLVMLFGDDVVECEILAQKAGR  180
Sbjct:  121  QPTKDLLPEELPELLASLPFPKSMRWGNSDVEFIRPIRWIVALFGDQVLPLSIGGISSGR  180

Query:  181  ESRGHRFHNPDNVRISSPAAYLEDLRGAHVLADFAERRELIAKRVAELAAEQQGSAIVPP  240
Sbjct:  181  TSRGHRFLGPAEVSIDSPQAYEETLRKAHVIVDPKERKAIILQGLEALATEVGGSAIVPE  240

Query:  241  SLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDANGKLLPRFITVA  300
Sbjct:  241  DLLDEVTNLVEYPFVLLGKFDEAFLSLPEELLTTVMKEHQRYFPTYDKDGKLLPNFIVVS  300

Query:  301  NVESKAPENIVSGNEKVVRPRLTDAEFFFKQDKKQPLESFNERLRNVVFQAQLGTVFEKA  360
Sbjct:  301  NNSPNDPQKIIEGNEKVLRARLTDAEFFYKEDLKKKLSSFLPKLESVLFHEKLGTLYDKV  360

Query:  361  QRVSGLAAYIAERIGGNAQNAARAGILSKCDLATEMVGEFPEMQGIAGYYYATHGGEAED  420
Sbjct:  361  ERIQKMASKLALQLGADEDLVKRAAQLSKADLVTEMVYEFPELQGIMGEYYALHDGESEA  420

Query:  421  VALALNEQYMPRGAGAELPSTLTGAAVAVADKLDTLVGIFGIGMLPTGSKDPYALRRAAL  480
Sbjct:  421  VAVALNEQYLPRSAGDKLPSSTTGTVLALADKLDTLVSIFGLGLIPTGSSDPFALRRQAL  480

Query:  481  GVLRILIEKQLDLDLVAAVNAAVEQYGDKVKAAGLAEQVLDFVFDRLRARYEDEGVDVAV  540
Sbjct:  481  GILKILVEKNLEIDLEDLLERLARHFPSVWSKANVLEDLVEFLLGRLRTLLQDEGIDVDV  540

Query:  541  YQSV  544
Sbjct:  541  IRAV  544

gnl|CDD|26423, pfam05746, tRNA-synt_1d_C, DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.

             CD-Length = 117 residues,  82.1% aligned
             Score = 47.2 bits (112), Expect = 6e-06

Query:  577  ANKRVSNILAKSEDEVPP-NVDASLLVEAAEKALGSAVANAESEVAPLAAARDYRAALAR  635
Sbjct:  4    AHARISSILRKAGEKGINDDIDALLLLEEEEKELLKALLKFPEVVEEAAEELEPHRLANY  63

Query:  636  LAALREPVDTFFADVMVNVDDAAVRANRYALLAKLR  671
Sbjct:  64   LYDLAKAFNSFYDNCPVLDEDDEERQARLALLKAVR  99

---

             CD-Length = 691 residues,  99.9% aligned
             Score =  888 bits (2297), Expect = 0.0

Query:  1    MSAKDFLVELGTEELPPKALNSLGEAFLSGIEKGLKAAGLSYAAARFYAAPRRLAVLVEQ  60
Sbjct:  1    MSMKDLLLEIGTEELPAKALRSAAEQLAKKFTAGLKEAGLSFEGVEVFATPRRLALLVKG  60

Query:  61   LAVQQPDRTVNLDGPPLQAAFDASGNPTQAALGFAKKCGVDLQQI-----DKSGPKLRFS  115
Sbjct:  61   LAEAQPDREEEKKGPPVKAAFDADGKPTKAAEGFARGQGVSVEDLERRKDDKKGEEYVYR  120

Query:  116  QTI-AGQPAAGLLPGIVEASLNELPIPKRMRWAARREEFVRPTQWLVMLFGDDVVECEIL  174
Sbjct:  121  VKKEEGQPTEELLPEIVPEAIASLPFPKSMRWGSKDVRFIRPIHWIVALLGDEVIPFEIL  180

Query:  175  AQKAGRESRGHRFHNPDNVRISSPAAYLEDLRGAHVLADFAERRELIAKRVAELAAEQQG  234
Sbjct:  181  GIKSGRITRGHRFLGPGEITIDSADDYVEKLREGKVIADPEERKAIILEQIEELASKLGG  240

Query:  235  SAIVPPSLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDANGKLLP  294
Sbjct:  241  VADIDEDLLEEVTALVEYPTVLLGKFEEKFLELPEEVLITTMKEHQKYFPVFDQGGKLLP  300

Query:  295  RFITVANVESKAPENIVSGNEKVVRPRLTDAEFFFKQDKKQPLESFNERLRNVVFQAQLG  354
Sbjct:  301  HFIFVSNGEPKDPENIIEGNEKVLRARLSDAEFFFKEDLKKPLESRLPKLKTVTFHEKLG  360

Query:  355  TVFEKAQRVSGLAAYIAERIGGNAQNAARAGILSKCDLATEMVGEFPEMQGIAGYYYATH  414
Sbjct:  361  TLADKVERIKKIAAYIAPQLGADVEDADRAALLAKADLVTEMVGEFPELQGIMGEYYALH  420

Query:  415  GGEAEDVALALNEQYMPRGAGAELPSTLTGAAVAVADKLDTLVGIFGIGMLPTGSKDPYA  474
Sbjct:  421  DGEDEEVALAIEEHYLPRFAGDELPSTPVGAVVALADKLDTLVGFFGIGLIPTGSKDPYA  480

Query:  475  LRRAALGVLRILIEKQLDLDLVAAVNAAVEQYGDKVKAAGLAEQVLDFVFDRLRARYEDE  534
Sbjct:  481  LRRAALGILRIILEKNLDLDLEELLDKAVASFKSKLTNAKVLEELLDFFLGRLRTYLQDE  540

Query:  535  GVDVAVYQSVRALKPSSPLDFDQRVQAVQAFRQLPEAEALAAANKRVSNILAKSEDEVPP  594
Sbjct:  541  GYRKDIIDAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEKKLSG  600

Query:  595  NVDASLLVEAAEKALGSAVANAESEVAPLAAARDYRAALARLAALREPVDTFFADVMVNV  654
Sbjct:  601  TVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVMVMA  660

Query:  655  DDAAVRANRYALLAKLRGSFLGVADISLLG  684
Sbjct:  661  EDEALRNNRLALLSKLRELFLKVADFSLLV  690