Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|8362 pfam02745, MCR_alpha_N, Methyl-coenzyme M redu... 25 3.7
gnl|CDD|10674 COG0806, RimM, RimM protein, required for 16S... 24 5.0
gnl|CDD|2988 pfam02478, Pneumo_phosprot, Pneumovirus phosph... 24 5.6
gnl|CDD|10723 COG0857, Pta, BioD-like N-terminal domain of ... 24 8.2
>gnl|CDD|8362 pfam02745, MCR_alpha_N, Methyl-coenzyme M reductase alpha subunit,
N-terminal domain. Methyl-coenzyme M reductase (MCR) is
the enzyme responsible for microbial formation of
methane. It is a hexamer composed of 2 alpha (this
family), 2 beta (pfam02241), and 2 gamma (pfam02240)
subunits with two identical nickel porphinoid active
sites. The N-terminal domain has a ferredoxin-like fold
Length = 268
Score = 24.6 bits (53), Expect = 3.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 21 LYVHRNASANEMLESVQERLRALLGLLHALERIEVRTGQGVPIQRVAHILVTL 73
Sbjct: 86 LHFVNNAAMQQMWDDI--RRTVIVGLDTAHAVLEKRLGKEVTPETINHYLETL 136
>gnl|CDD|10674 COG0806, RimM, RimM protein, required for 16S rRNA processing
[Translation, ribosomal structure and biogenesis]
Length = 174
Score = 24.4 bits (53), Expect = 5.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 47 LHALERIEVRTGQGVPIQRVAHILVTLGGDAL 78
Sbjct: 103 YHDLIGLEVVTEDGELLGKVTEILETGANDVL 134
>gnl|CDD|2988 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This family
represents the phosphoprotein of Paramyxoviridae, a
putative RNA polymerase alpha subunit that may function
in template binding
Length = 267
Score = 24.0 bits (51), Expect = 5.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 5 ERSVPSYVEYPYEQAILYVHRNASANEMLESVQERLRALLGLLHAL 50
Sbjct: 137 EESILSFEETNKDTA------STSIEARLDRIEEKLSMILGMLKTL 176
>gnl|CDD|10723 COG0857, Pta, BioD-like N-terminal domain of phosphotransacetylase
[General function prediction only]
Length = 354
Score = 23.7 bits (51), Expect = 8.2
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 44 LGLLHALERIEVRTGQGVPIQRVAHILVTLGGDALTLLTAAHRATTS 90
Sbjct: 21 LGLLRALEQKGLKVAYFKP------IGTRTGKDADDLTEEDIRATSS 61
Lambda K H
0.319 0.132 0.360
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 1,343,000
Number of Sequences: 0
Number of extensions: 99059
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of query: 0
length of database: 5,506,404
effective HSP length: 66
effective length of query: -66
effective length of database: 4,315,830
effective search space: -284844780
effective search space used: 103579920
T: 11
A: 40
X1: 1600 (735.6 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1887.8 bits)
S2: 54 (25.3 bits)