RPS-BLAST 2.2.6 [Apr-09-2003]

Database: All 
           18,039 sequences; 5,506,404 total letters



Query= 5291 (90 letters)

Distribution of 4 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|CDD|8362  pfam02745, MCR_alpha_N, Methyl-coenzyme M redu...    25   3.7   
gnl|CDD|10674  COG0806, RimM, RimM protein, required for 16S...    24   5.0   
gnl|CDD|2988  pfam02478, Pneumo_phosprot, Pneumovirus phosph...    24   5.6   
gnl|CDD|10723  COG0857, Pta, BioD-like N-terminal domain of ...    24   8.2   

>gnl|CDD|8362 pfam02745, MCR_alpha_N, Methyl-coenzyme M reductase alpha subunit, N-terminal domain. Methyl-coenzyme M reductase (MCR) is the enzyme responsible for microbial formation of methane. It is a hexamer composed of 2 alpha (this family), 2 beta (pfam02241), and 2 gamma (pfam02240) subunits with two identical nickel porphinoid active sites. The N-terminal domain has a ferredoxin-like fold Length = 268 Score = 24.6 bits (53), Expect = 3.7 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query:  21   LYVHRNASANEMLESVQERLRALLGLLHALERIEVRTGQGVPIQRVAHILVTL  73
Sbjct:  86   LHFVNNAAMQQMWDDI--RRTVIVGLDTAHAVLEKRLGKEVTPETINHYLETL  136


>gnl|CDD|10674 COG0806, RimM, RimM protein, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis] Length = 174 Score = 24.4 bits (53), Expect = 5.0 Identities = 12/32 (37%), Positives = 15/32 (46%)
Query:  47   LHALERIEVRTGQGVPIQRVAHILVTLGGDAL  78
Sbjct:  103  YHDLIGLEVVTEDGELLGKVTEILETGANDVL  134


>gnl|CDD|2988 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This family represents the phosphoprotein of Paramyxoviridae, a putative RNA polymerase alpha subunit that may function in template binding Length = 267 Score = 24.0 bits (51), Expect = 5.6 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query:  5    ERSVPSYVEYPYEQAILYVHRNASANEMLESVQERLRALLGLLHAL  50
Sbjct:  137  EESILSFEETNKDTA------STSIEARLDRIEEKLSMILGMLKTL  176


>gnl|CDD|10723 COG0857, Pta, BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] Length = 354 Score = 23.7 bits (51), Expect = 8.2 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query:  44   LGLLHALERIEVRTGQGVPIQRVAHILVTLGGDALTLLTAAHRATTS  90
Sbjct:  21   LGLLRALEQKGLKVAYFKP------IGTRTGKDADDLTEEDIRATSS  61

Lambda     K      H
   0.319    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 1,343,000
Number of Sequences: 0
Number of extensions: 99059
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of query: 0
length of database: 5,506,404
effective HSP length: 66
effective length of query: -66
effective length of database: 4,315,830
effective search space: -284844780
effective search space used: 103579920
T: 11
A: 40
X1: 1600 (735.6 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1887.8 bits)
S2: 54 (25.3 bits)