Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|22058 KOG4282, KOG4282, Transcription factor GT-2 a... 24 4.4
gnl|CDD|16383 pfam05088, Bac_GDH, Bacterial NAD-glutamate d... 24 7.3
>gnl|CDD|22058 KOG4282, KOG4282, Transcription factor GT-2 and related proteins,
contains trihelix DNA-binding/SANT domain [Transcription]
Length = 345
Score = 24.4 bits (52), Expect = 4.4
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 4 QRQYPRTPLKCRIRI 18
Sbjct: 95 ELGYPRSPKQCKAKI 109
>gnl|CDD|16383 pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This
family consists of several bacterial proteins which are
closely related to NAD-glutamate dehydrogenase found in
Streptomyces clavuligerus. Glutamate dehydrogenases
(GDHs) are a broadly distributed group of enzymes that
catalyse the reversible oxidative deamination of
glutamate to ketoglutarate and ammonia
Length = 1528
Score = 23.7 bits (51), Expect = 7.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 57 QVQDLPIDAPILQMEVVRVDAEGVGLRF 84
Sbjct: 702 AIPELPAPRPKREIFVYSPRVEGVHLRF 729
Lambda K H
0.321 0.139 0.404
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 1,451,630
Number of Sequences: 0
Number of extensions: 110770
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of query: 0
length of database: 5,506,404
effective HSP length: 64
effective length of query: -64
effective length of database: 4,351,908
effective search space: -278522112
effective search space used: 104445792
T: 11
A: 40
X1: 1600 (740.2 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1899.5 bits)
S2: 59 (27.1 bits)