Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|13919 COG4783, COG4783, Putative Zn-dependent prote... 47 9e-07
gnl|CDD|12402 COG3063, PilF, Tfp pilus assembly protein Pil... 44 6e-06
gnl|CDD|5390 cd00189, TPR, Tetratricopeptide repeat domain;... 40 9e-05
gnl|CDD|22401 KOG4626, KOG4626, O-linked N-acetylglucosamin... 37 7e-04
gnl|CDD|14107 COG4976, COG4976, Predicted methyltransferase... 35 0.002
gnl|CDD|18917 KOG1127, KOG1127, TPR repeat-containing prote... 35 0.003
gnl|CDD|18348 KOG0553, KOG0553, TPR repeat-containing prote... 33 0.009
gnl|CDD|18291 KOG0495, KOG0495, HAT repeat protein [RNA pro... 33 0.012
gnl|CDD|27131 pfam07024, ImpE, ImpE protein. This family co... 32 0.025
gnl|CDD|12953 COG3629, DnrI, DNA-binding transcriptional ac... 32 0.025
gnl|CDD|18343 KOG0548, KOG0548, Molecular co-chaperone STI1... 32 0.035
gnl|CDD|12301 COG2956, COG2956, Predicted N-acetylglucosami... 31 0.044
gnl|CDD|19862 KOG2076, KOG2076, RNA polymerase III transcri... 31 0.056
gnl|CDD|18345 KOG0550, KOG0550, Molecular chaperone (DnaJ s... 30 0.080
gnl|CDD|18963 KOG1173, KOG1173, Anaphase-promoting complex ... 29 0.16
gnl|CDD|18918 KOG1128, KOG1128, Uncharacterized conserved p... 29 0.20
gnl|CDD|13484 COG4235, COG4235, Cytochrome c biogenesis fac... 29 0.22
gnl|CDD|18945 KOG1155, KOG1155, Anaphase-promoting complex ... 28 0.25
gnl|CDD|13659 COG4455, ImpE, Protein of avirulence locus in... 28 0.46
gnl|CDD|14054 COG4920, COG4920, Predicted membrane protein ... 27 0.64
gnl|CDD|18915 KOG1125, KOG1125, TPR repeat-containing prote... 27 1.0
gnl|CDD|18916 KOG1126, KOG1126, DNA-binding cell division c... 26 1.0
gnl|CDD|22283 KOG4508, KOG4508, Uncharacterized conserved p... 25 2.0
gnl|CDD|19611 KOG1825, KOG1825, Fry-like conserved proteins... 25 3.3
gnl|CDD|12457 COG3118, COG3118, Thioredoxin domain-containi... 25 3.5
gnl|CDD|24194 smart00028, TPR, Tetratricopeptide repeats; R... 25 3.8
gnl|CDD|19713 KOG1927, KOG1927, R-kappa-B and related trans... 24 4.4
gnl|CDD|13253 COG3947, COG3947, Response regulator containi... 24 5.8
gnl|CDD|19788 KOG2002, KOG2002, TPR-containing nuclear phos... 24 5.8
gnl|CDD|21939 KOG4162, KOG4162, Predicted calmodulin-bindin... 23 7.8
gnl|CDD|19097 KOG1308, KOG1308, Hsp70-interacting protein H... 23 9.9
>gnl|CDD|13919 COG4783, COG4783, Putative Zn-dependent protease, contains TPR
repeats [General function prediction only]
Length = 484
Score = 46.9 bits (111), Expect = 9e-07
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
Sbjct: 360 IERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419
Query: 63 AAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKL 100
Sbjct: 420 ELGNRAEALLARAEGYALA---GRLEQAIIFLMRASQQ 454
>gnl|CDD|12402 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and
secretion / Intracellular trafficking and secretion]
Length = 250
Score = 43.8 bits (103), Expect = 6e-06
Identities = 20/67 (29%), Positives = 35/67 (52%)
Query: 20 RFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLA 79
Sbjct: 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS 97
Query: 80 AAATHGD 86
Sbjct: 98 LAPNNGD 104
>gnl|CDD|5390 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34
amino acids
[WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-
X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in
a variety of organisms including bacteria, cyanobacteria,
yeast, fungi, plants, and humans in various subcellular
locations; involved in a variety of functions including
protein-protein interactions, but common features in the
interaction partners have not been defined; involved in
chaperone, cell-cycle, transciption, and protein
transport complexes; the number of TPR motifs varies
among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats
generate a right-handed helical structure with an
amphipathic channel that is thought to accomodate an
alpha-helix of a target protein; it has been proposed
that TPR proteins preferably interact with WD-40 repeat
proteins, but in many instances several TPR-proteins seem
to aggregate to multi-protein complexes; examples of
TPR-proteins include, Cdc16p, Cdc23p and Cdc27p
components of the cyclosome/APC, the Pex5p/Pas10p
receptor for peroxisomal targeting signals, the Tom70p
co-receptor for mitochondrial targeting signals, Ser/Thr
phosphatase 5C and the p110 subunit of O-GlcNAc
transferase; three copies of the repeat are present here
Length = 100
Score = 40.1 bits (93), Expect = 9e-05
Identities = 24/77 (31%), Positives = 34/77 (44%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
Sbjct: 20 LEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79
Query: 63 AAGDLAGARQAWEQGLA 79
Sbjct: 80 KLGKYEEALEAYEKALE 96
Score = 31.6 bits (71), Expect = 0.029
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 21 FGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Sbjct: 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
>gnl|CDD|22401 KOG4626, KOG4626, O-linked N-acetylglucosamine transferase OGT
[Carbohydrate transport and metabolism, Posttranslational
modification, protein turnover, chaperones, Signal
transduction mechanisms]
Length = 966
Score = 36.9 bits (85), Expect = 7e-04
Identities = 16/83 (19%), Positives = 31/83 (37%)
Query: 7 EKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGD 66
Sbjct: 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS 335
Query: 67 LAGARQAWEQGLAAAATHGDKQA 89
Sbjct: 336 VTEAVDCYNKALRLCPNHADAMN 358
Score = 31.5 bits (71), Expect = 0.030
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Sbjct: 122 LANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL 177
Score = 29.6 bits (66), Expect = 0.13
Identities = 12/67 (17%), Positives = 27/67 (40%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLAAAA 82
Sbjct: 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453
Query: 83 THGDKQA 89
Sbjct: 454 TFAEAHS 460
Score = 29.6 bits (66), Expect = 0.10
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Sbjct: 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483
Score = 27.3 bits (60), Expect = 0.52
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLAAAA 82
Sbjct: 224 LGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283
Query: 83 TH 84
Sbjct: 284 NH 285
>gnl|CDD|14107 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only]
Length = 287
Score = 35.3 bits (81), Expect = 0.002
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 28 LDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLAAAA 82
Sbjct: 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60
>gnl|CDD|18917 KOG1127, KOG1127, TPR repeat-containing protein [RNA processing and
modification]
Length = 1238
Score = 35.0 bits (80), Expect = 0.003
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 1 MMIEGLEKMLAKGVDNALLRFGLGKGYLD-AGDAERATEHLQRCVEQDPTYSAGWKLLG 58
Sbjct: 20 EALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLG 78
Score = 27.3 bits (60), Expect = 0.56
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 6 LEKMLAKGVDNALLRFGLGKGYLDAG-----DAERATEHLQRCVEQDPTYSAGWKLLGKA 60
Sbjct: 442 LPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQI 501
Query: 61 RQAAGDLAGARQAWEQGLAAAAT 83
Sbjct: 502 YRDSDDMKRAKKCFDKAFELDAT 524
Score = 25.0 bits (54), Expect = 2.9
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 32 DAERATEHLQRCVEQDPTYSAGWKLLGKA 60
Sbjct: 17 EYEEALEQSKKVLKEDPDNYNAQVFLGVA 45
Score = 23.8 bits (51), Expect = 6.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAG 65
Sbjct: 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610
>gnl|CDD|18348 KOG0553, KOG0553, TPR repeat-containing protein [General function
prediction only]
Length = 304
Score = 33.4 bits (76), Expect = 0.009
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 27 YLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Sbjct: 125 YSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL 176
Score = 28.4 bits (63), Expect = 0.28
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQA 73
Sbjct: 155 LGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQA 205
>gnl|CDD|18291 KOG0495, KOG0495, HAT repeat protein [RNA processing and
modification]
Length = 913
Score = 33.0 bits (75), Expect = 0.012
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 31 GDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Sbjct: 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712
Score = 26.5 bits (58), Expect = 1.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 40 LQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLAAA 81
Sbjct: 573 LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614
Score = 25.7 bits (56), Expect = 1.9
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 6 LEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKA 60
Sbjct: 840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894
Score = 25.3 bits (55), Expect = 2.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 29 DAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQG 77
Sbjct: 263 DLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKG 311
Score = 24.2 bits (52), Expect = 4.5
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 33 AERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLAAAATHGDK 87
Sbjct: 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGEL 887
>gnl|CDD|27131 pfam07024, ImpE, ImpE protein. This family consists of several
bacterial proteins including ImpE from Rhizobium
leguminosarum. It has been suggested that the imp locus
is involved in the secretion to the environment of
proteins, including periplasmic RbsB protein, that cause
blocking of infection specifically in pea plants. The
exact function of this family is unknown
Length = 255
Score = 31.8 bits (72), Expect = 0.025
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
Sbjct: 11 ALQLLIQQVKAKPTDATLRHFLFQLLCVAGDWERADEQLMLCATLSPEYTPGASLYRHLL 70
Query: 62 QAAGDLAGARQAWEQGLAAAATHGD 86
Sbjct: 71 RA----EAARDEVFAGKASPGFLGG 91
>gnl|CDD|12953 COG3629, DnrI, DNA-binding transcriptional activator of the SARP
family [Signal transduction mechanisms]
Length = 280
Score = 31.8 bits (72), Expect = 0.025
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 22 GLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQG 77
Sbjct: 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213
>gnl|CDD|18343 KOG0548, KOG0548, Molecular co-chaperone STI1 [Posttranslational
modification, protein turnover, chaperones]
Length = 539
Score = 31.5 bits (71), Expect = 0.035
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 15 DNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAW 74
Sbjct: 34 TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93
Query: 75 EQGLA 79
Sbjct: 94 SEGLE 98
>gnl|CDD|12301 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase
[Carbohydrate transport and metabolism]
Length = 389
Score = 31.0 bits (70), Expect = 0.044
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTY-SAGWKLLGKAR 61
Sbjct: 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259
Query: 62 QAAGDLAGAR 71
Sbjct: 260 AQLGKPAEGL 269
Score = 25.2 bits (55), Expect = 2.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWE 75
Sbjct: 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALE 238
>gnl|CDD|19862 KOG2076, KOG2076, RNA polymerase III transcription factor TFIIIC
[Transcription]
Length = 895
Score = 30.7 bits (69), Expect = 0.056
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 31 GDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLAAAATHGDKQAE 90
Sbjct: 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELW 210
Query: 91 KEMTVFLRKLD 101
Sbjct: 211 KRLADLSEQLG 221
>gnl|CDD|18345 KOG0550, KOG0550, Molecular chaperone (DnaJ superfamily)
[Posttranslational modification, protein turnover,
chaperones]
Length = 486
Score = 30.1 bits (67), Expect = 0.080
Identities = 14/87 (16%), Positives = 27/87 (31%)
Query: 16 NALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWE 75
Sbjct: 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345
Query: 76 QGLAAAATHGDKQAEKEMTVFLRKLDR 102
Sbjct: 346 KAMQLEKDCEIRRTLREAQLALKKSKR 372
>gnl|CDD|18963 KOG1173, KOG1173, Anaphase-promoting complex (APC), Cdc16 subunit
[Cell cycle control, cell division, chromosome
partitioning, Posttranslational modification, protein
turnover, chaperones]
Length = 611
Score = 29.2 bits (65), Expect = 0.16
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 15 DNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKA 60
Sbjct: 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHS 355
>gnl|CDD|18918 KOG1128, KOG1128, Uncharacterized conserved protein, contains TPR
repeats [General function prediction only]
Length = 777
Score = 28.8 bits (64), Expect = 0.20
Identities = 15/65 (23%), Positives = 25/65 (38%)
Query: 23 LGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGLAAAA 82
Sbjct: 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550
Query: 83 THGDK 87
Sbjct: 551 DNAEA 555
>gnl|CDD|13484 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational
modification, protein turnover, chaperones]
Length = 287
Score = 28.8 bits (64), Expect = 0.22
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 34 ERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Sbjct: 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL 183
>gnl|CDD|18945 KOG1155, KOG1155, Anaphase-promoting complex (APC), Cdc23 subunit
[Cell cycle control, cell division, chromosome
partitioning, Posttranslational modification, protein
turnover, chaperones]
Length = 559
Score = 28.4 bits (63), Expect = 0.25
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 31 GDAERATEHLQRCVEQDPTYSAGWKLLG 58
Sbjct: 344 SEHEKAVMYFKRALKLNPKYLSAWTLMG 371
>gnl|CDD|13659 COG4455, ImpE, Protein of avirulence locus involved in
temperature-dependent protein secretion [General function
prediction only]
Length = 273
Score = 27.6 bits (61), Expect = 0.46
Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 2 MIEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKAR 61
Sbjct: 20 AIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79
Query: 62 QAAGDLAGARQAWEQGLAAAATHGDKQAE 90
Sbjct: 80 RC----EAARNEVFAGGAVPGFLGGPSPE 104
>gnl|CDD|14054 COG4920, COG4920, Predicted membrane protein [Function unknown]
Length = 249
Score = 27.2 bits (60), Expect = 0.64
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 59 KARQAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRK 99
Sbjct: 58 KGVVSAQEISRARPLYEEKEANELLEKDEELLNEYKRFARA 98
>gnl|CDD|18915 KOG1125, KOG1125, TPR repeat-containing protein [General function
prediction only]
Length = 579
Score = 26.5 bits (58), Expect = 1.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 21 FGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLG 58
Sbjct: 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLG 326
>gnl|CDD|18916 KOG1126, KOG1126, DNA-binding cell division cycle control protein
[Cell cycle control, cell division, chromosome
partitioning]
Length = 638
Score = 26.5 bits (58), Expect = 1.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 21 FGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWEQGL 78
Sbjct: 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550
>gnl|CDD|22283 KOG4508, KOG4508, Uncharacterized conserved protein [Function
unknown]
Length = 522
Score = 25.4 bits (55), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 69 GARQAWEQGLAAAATHGDKQAEKE 92
Sbjct: 5 KAKKNQKTGAAAAPPHESQKKEKE 28
>gnl|CDD|19611 KOG1825, KOG1825, Fry-like conserved proteins [General function
prediction only]
Length = 2206
Score = 25.0 bits (54), Expect = 3.3
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 27 YLDAGDA----ERATEHLQRCVEQDPTYSAGWKLL 57
Sbjct: 2028 LLCDGDFDLHSALAFGLLLRLLEKGPVLYQRSILL 2062
>gnl|CDD|12457 COG3118, COG3118, Thioredoxin domain-containing protein
[Posttranslational modification, protein turnover,
chaperones]
Length = 304
Score = 24.9 bits (54), Expect = 3.5
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAG 53
Sbjct: 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272
>gnl|CDD|24194 smart00028, TPR, Tetratricopeptide repeats; Repeats present in 4 or
more copies in proteins. Contain a minimum of 34 amino
acids each and self-associate via a "knobs and holes"
mechanism
Length = 34
Score = 24.8 bits (55), Expect = 3.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 17 ALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTY 50
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|19713 KOG1927, KOG1927, R-kappa-B and related transcription factors
[Transcription]
Length = 1274
Score = 24.4 bits (52), Expect = 4.4
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 54 WKLLGKARQAAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDRART 105
Sbjct: 400 HAFAGQMKDVKGSLADLRQDW---LRTGKNHGDGFSVDPRYISDNLNSKSKK 448
>gnl|CDD|13253 COG3947, COG3947, Response regulator containing CheY-like receiver
and SARP domains [Signal transduction mechanisms]
Length = 361
Score = 24.2 bits (52), Expect = 5.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 25 KGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGARQAWE 75
Sbjct: 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337
>gnl|CDD|19788 KOG2002, KOG2002, TPR-containing nuclear phosphoprotein that
regulates K(+) uptake [Inorganic ion transport and
metabolism]
Length = 1018
Score = 24.2 bits (52), Expect = 5.8
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 15 DNALLRFGLGKGYLDAGDAERA---TEHLQRCVEQDPTYSAGWKLLGKARQAAGDLAGAR 71
Sbjct: 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327
Query: 72 QAWEQGLAAAATH 84
Sbjct: 328 KYYMESLKADNDN 340
>gnl|CDD|21939 KOG4162, KOG4162, Predicted calmodulin-binding protein [Signal
transduction mechanisms]
Length = 799
Score = 23.4 bits (50), Expect = 7.8
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 23 LGKGYLDAGDAERATEH--LQRCVEQDPTYSAGWKLLGKARQAAGDLAGA 70
Sbjct: 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773
>gnl|CDD|19097 KOG1308, KOG1308, Hsp70-interacting protein Hip/Transient component
of progesterone receptor complexes and an Hsp70-binding
protein [Posttranslational modification, protein
turnover, chaperones, Signal transduction mechanisms]
Length = 377
Score = 23.0 bits (49), Expect = 9.9
Identities = 18/102 (17%), Positives = 31/102 (30%)
Query: 3 IEGLEKMLAKGVDNALLRFGLGKGYLDAGDAERATEHLQRCVEQDPTYSAGWKLLGKARQ 62
Sbjct: 134 IELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193
Query: 63 AAGDLAGARQAWEQGLAAAATHGDKQAEKEMTVFLRKLDRAR 104
Sbjct: 194 LLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHR 235
Lambda K H
0.317 0.132 0.384
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 1,648,362
Number of Sequences: 0
Number of extensions: 134616
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of query: 0
length of database: 5,506,404
effective HSP length: 81
effective length of query: -81
effective length of database: 4,045,245
effective search space: -327664845
effective search space used: 97085880
T: 11
A: 40
X1: 1600 (731.6 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1877.7 bits)
S2: 57 (26.4 bits)