Score E
Sequences producing significant alignments: (bits) Value
gb|AAG03417.1|AE004442_4 (AE004442) hypothetical protein [P... 829 0.0
dbj|BAB04896.1| (AP001511) protein secretion (post-transloc... 56 4e-07
gb|AAK78260.1|AE007541_5 (AE007541) Peptidil-prolyl cis-tra... 55 8e-07
dbj|BAB50348.1| (AP003002) similar to cell binding factor 2... 52 5e-06
gb|AAO34863.1| (AE015936) putative peptidyl-prolyl cis-tran... 50 2e-05
emb|CAB11848.1| (Z99104) yacD [Bacillus subtilis subsp. sub... 50 3e-05
dbj|BAA05307.1| (D26185) unknown [Bacillus subtilis] 50 3e-05
gb|AAP96493.1| (AE017155) peptidyl-prolyl cis-trans isomera... 49 5e-05
gb|AAP08030.1| (AE017001) Protein export protein prsA precu... 49 5e-05
gb|AAP25027.1| (AE017027) protein export protein prsA [Baci... 49 8e-05
gb|AAM25688.1| (AE013197) Parvulin-like peptidyl-prolyl iso... 48 1e-04
gb|AAL51305.1| (AE009455) PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 48 1e-04
gb|AAN30835.1|AE014483_14 (AE014483) peptidyl-prolyl cis-tr... 48 1e-04
emb|CAD14044.1| (AL646059) PROBABLE PEPTIDYL-PROLYL CIS-TRA... 48 1e-04
gb|AAK04063.1| (AE006234) unknown [Pasteurella multocida] 47 2e-04
gb|AAC22665.1| (U32781) peptidyl-prolyl cis-trans isomerse,... 47 2e-04
emb|CAA74418.1| (Y14077) 33kDa lipoprotein [Bacillus subtilis] 47 3e-04
emb|CAB12835.1| (Z99109) molecular chaperone [Bacillus subt... 47 3e-04
emb|CAA40543.1| (X57271) 33kDa lipoprotein [Bacillus subtilis] 47 3e-04
dbj|BAB79974.1| (AP003186) hypothetical protein [Clostridiu... 46 4e-04
dbj|BAC12039.1| (AP004593) protein secretion (post-transloc... 46 5e-04
emb|CAB85417.1| (AL162758) putative rotamase [Neisseria men... 43 0.004
gb|AAF40735.1| (AE002385) peptidyl-prolyl cis-trans isomera... 43 0.004
dbj|BAC59184.1| (AP005076) peptidyl-prolyl cis-trans isomer... 43 0.004
gb|AAF09662.1|AE001870_1 (AE001870) peptidyl-prolyl cis-tra... 42 0.006
dbj|BAB82189.1| (AP003194) probable protein export protein ... 42 0.006
gb|AAL03418.1| (AE008642) protein export protein prsA precu... 42 0.007
emb|CAA61657.1| (X89470) parvulin, PPIase-like protein [Ric... 42 0.010
emb|CAC10161.1| (AJ279071) parvulin-like PPIase [Rickettsia... 42 0.010
emb|CAA15023.1| (AJ235272) PROTEIN EXPORT PROTEIN PRSA PREC... 42 0.010
>gb|AAG03417.1|AE004442_4 (AE004442) hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 428
Score = 829 bits (2142), Expect = 0.0
Identities = 422/428 (98%), Positives = 425/428 (99%)
Query: 1 MHRLLSDRARGWRRALCGVAFGLLAWSAHGVPAKAPQDLRIDGEVLPGKSVDLLEQALSR 60
MHRLLSDRARGWRRALCG+ GLLAWSAHGVPAKAPQDLRIDGEVLPG+S+DLLEQALSR
Sbjct: 1 MHRLLSDRARGWRRALCGIVLGLLAWSAHGVPAKAPQDLRIDGEVLPGRSIDLLEQALSR 60
Query: 61 VKFNTDPQQLRRGLVENRLLARAVEDQLTAQSRADLDASVEIEAGNLLEQVYGRRYREDL 120
VKFNTDPQQLRRGLVENRLLARAVEDQLTAQSRADLDASVEIEAGNLLEQVYGRRYREDL
Sbjct: 61 VKFNTDPQQLRRGLVENRLLARAVEDQLTAQSRADLDASVEIEAGNLLEQVYGRRYREDL 120
Query: 121 GPYLRQPRALSAERLREVLAPRSRGLVENSLLLDETQRREAAGVELIGWQFPGQPAQVLD 180
GPYLRQPRALSAERLREVLAPRSRGLVENSLLLDETQRREAAGVELIGWQFPGQPAQVLD
Sbjct: 121 GPYLRQPRALSAERLREVLAPRSRGLVENSLLLDETQRREAAGVELIGWQFPGQPAQVLD 180
Query: 181 LLSLYEGDNVQGQVELQQGNLAYLARQVQTRIRRDYLWYRLARDGFGPAERQGVRTLVRD 240
LLSLYEGDNVQGQVELQQGNLAYLARQVQTRIRRDYLWYRLARDGFGPAERQGVRTLVRD
Sbjct: 181 LLSLYEGDNVQGQVELQQGNLAYLARQVQTRIRRDYLWYRLARDGFGPAERQGVRTLVRD 240
Query: 241 KLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRL 300
KLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRL
Sbjct: 241 KLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRL 300
Query: 301 ADQASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQ 360
ADQASADKVYAELR GLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQ
Sbjct: 301 ADQASADKVYAELRGGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQ 360
Query: 361 KADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLL 420
KADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLL
Sbjct: 361 KADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLL 420
Query: 421 AGARVEGL 428
AGARVEGL
Sbjct: 421 AGARVEGL 428
>dbj|BAB04896.1| (AP001511) protein secretion (post-translocation chaperonin)
[Bacillus halodurans]
Length = 333
Score = 56.2 bits (134), Expect = 4e-07
Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 11/159 (6%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
+++D++ +AY+ N + ++ +V+A+HI + D+ +A++V L G F E YS+
Sbjct: 138 EITDEEKQAYFDENRD---SLIEVEASHILVEDEETAEEVLDRLEAGDDFAELASEYSV- 193
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLP 389
D GDLG D + + A + D VS+P+ + I+ V R+D
Sbjct: 194 DPSAEANNGDLGFFGKGD-MVPEFEEAAFNMEIDEVSEPVESTYGYHIILVTDRKDSYEE 252
Query: 390 LDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVEGL 428
L+++ ++ + RE+ Q E LR+LLA A + L
Sbjct: 253 LEEK-----IHDTLMRERSRTQEEV-LRDLLAQADINVL 285
>gb|AAK78260.1|AE007541_5 (AE007541) Peptidil-prolyl cis-trans isomerase [Clostridium
acetobutylicum]
Length = 247
Score = 55.1 bits (131), Expect = 8e-07
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 271 VSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLAD 330
V+D + E YY N E +++ +V A HI + + A K+ E++ G F+EA YS
Sbjct: 94 VADSEVEKYYEANKEMFKDPEKVAAKHILVQTEEDALKIREEIKEGKTFEEAAAEYSSCP 153
Query: 331 DRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPL 390
++R GDLG + + + A Q+ V P++ + +++V + +
Sbjct: 154 SKERG--GDLGAF-TRGQMVPEFEEAAFSQEIGEVGAPVKTQFGYHLIKVEGKIE-PAQR 209
Query: 391 DDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426
D SV+ + + +E+ + ++ + L +VE
Sbjct: 210 DFPSVKDAIKNRLLQERQSMKYSWYIDQLKNKYKVE 245
>dbj|BAB50348.1| (AP003002) similar to cell binding factor 2 precursor
[Mesorhizobium loti]
Length = 303
Score = 52.4 bits (124), Expect = 5e-06
Identities = 58/256 (22%), Positives = 109/256 (42%), Gaps = 27/256 (10%)
Query: 173 GQPAQVLDLLSLYEGDNVQ--GQVELQQGNLAYLARQVQTRIRRDYLWYRLARDGFGPAE 230
GQP DL+ L EG+ Q Q+ +Q A L+ ++ R+ + + DG
Sbjct: 56 GQPLTEADLV-LAEGELSQQFAQLPPEQRRAAALSAAIEIRV----MAAKAVTDGLDKDP 110
Query: 231 RQGVRTLVRDKLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNV 290
D R +L Q L+ + + + KV+D + A Y + + V
Sbjct: 111 ---------DFQRRMAFLQQRALHGEMVEKG-----VVNKVTDAEIRARYDQEIANTPPV 156
Query: 291 AQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRL 350
+V A HI + + A+ + +L G F + ++ +D + GDLG P
Sbjct: 157 NEVHARHILVKTKEEAEAIIKQLDGGGDFQKLANEHT-SDPSGKSNGGDLGWFGPGQMVP 215
Query: 351 DLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAA 410
+ + ++ QP++ + ++++ + +Q P D V+ + QAV R++ A
Sbjct: 216 EFDKAAFALEVGKYTEQPVQTQFGWHVIKLEDKRAKQPPAFD-DVKDQAKQAVIRDKYFA 274
Query: 411 QFETRLRNLLAGARVE 426
+++L AGA+VE
Sbjct: 275 ----LVKSLRAGAKVE 286
>gb|AAO34863.1| (AE015936) putative peptidyl-prolyl cis-trans isomerase
[Clostridium tetani E88]
Length = 246
Score = 50.4 bits (119), Expect = 2e-05
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
++ ++D + +Y N + +V HI + + A+ + E++NGL+F+EA + YS
Sbjct: 92 EIKEEDIKEFYNNNKNMFIEEERVSTKHILVETKEEAENIVDEIKNGLSFEEAAKEYSNC 151
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLR---KTALIQKADTVSQPMRIDGAFEIVRVRSR 383
+ GDLG GR +++ + A K T+S P++ + I+++ +
Sbjct: 152 PSKGAG--GDLGTF----GRGRMVKEFEEAAFEMKEGTISNPVKTQFGYHIIKLEKK 202
>emb|CAB11848.1| (Z99104) yacD [Bacillus subtilis subsp. subtilis str. 168]
Length = 297
Score = 50.1 bits (118), Expect = 3e-05
Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 271 VSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLAD 330
+S+K+ E++Y +N E Y+ + HI + D+ A +V EL+ G +F EAV D
Sbjct: 135 ISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSF-EAVAAERSTD 193
Query: 331 DRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTV------SQPMRIDGAFEIVRVRSR- 383
GDLG + + +A I++A T+ +P+++ + I++++ +
Sbjct: 194 RYTSPYGGDLGFVTEASDNI----PSAYIEEAKTLKEDEWSQEPIKVSNGYAIIQLKEKL 249
Query: 384 EDRQLPLDDRSVRFEVNQAVAREQL 408
+ R D+ V+ ++ + +A +QL
Sbjct: 250 KARTFSFDE--VKDQIRRQIAMDQL 272
>dbj|BAA05307.1| (D26185) unknown [Bacillus subtilis]
Length = 297
Score = 50.1 bits (118), Expect = 3e-05
Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 271 VSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLAD 330
+S+K+ E++Y +N E Y+ + HI + D+ A +V EL+ G +F EAV D
Sbjct: 135 ISNKELESFYNKNKELYQFDDSYRIRHIVVKDEEEAREVLKELKGGSSF-EAVAAERSTD 193
Query: 331 DRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTV------SQPMRIDGAFEIVRVRSR- 383
GDLG + + +A I++A T+ +P+++ + I++++ +
Sbjct: 194 RYTSPYGGDLGFVTEASDNI----PSAYIEEAKTLKEDEWSQEPIKVSNGYAIIQLKEKL 249
Query: 384 EDRQLPLDDRSVRFEVNQAVAREQL 408
+ R D+ V+ ++ + +A +QL
Sbjct: 250 KARTFSFDE--VKDQIRRQIAMDQL 272
>gb|AAP96493.1| (AE017155) peptidyl-prolyl cis-trans isomerase D [Haemophilus
ducreyi 35000HP]
Length = 620
Score = 49.3 bits (116), Expect = 5e-05
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
+V+D+ YY +N + + AHI+LA++ A +V L+ G F S
Sbjct: 247 QVTDEQVATYYEKNKADFVTKGETHLAHIQLANEEKAKQVAEALKQGTDFAMLANDTS-T 305
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSR-EDRQL 388
D GDLG + ++ +TA + VS+P+++D + I++V R ED L
Sbjct: 306 DSLSAQQGGDLGWTKAGIFP-EIFEQTANALAINEVSEPVKVDNNYHIIKVLDRKEDVAL 364
Query: 389 PLDDRSVRFEVNQAVAREQLAAQF 412
P + V+ ++ + + E L ++
Sbjct: 365 PFE--MVKDKIVKIIRDELLLTEY 386
>gb|AAP08030.1| (AE017001) Protein export protein prsA precursor [Bacillus cereus
ATCC 14579]
Length = 286
Score = 49.3 bits (116), Expect = 5e-05
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 271 VSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLAD 330
++DK+ + Y+ +++A+HI + D+A+A KV EL G +F+E ++YS D
Sbjct: 120 ITDKELKENYK---------PEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYS-ED 169
Query: 331 DRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPL 390
++ GDLG + A K D VS+P++ + I++V ++ Q P
Sbjct: 170 TGSKEKGGDLGYF-TAGKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTDIKE-QKPF 227
Query: 391 DD 392
D+
Sbjct: 228 DE 229
>gb|AAP25027.1| (AE017027) protein export protein prsA [Bacillus anthracis str.
Ames]
Length = 287
Score = 48.5 bits (114), Expect = 8e-05
Identities = 36/141 (25%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 271 VSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLAD 330
++DK+ + Y+ +++A+HI + D+A+A KV EL G +F+E ++YS D
Sbjct: 120 ITDKELKDNYK---------PEIKASHILVKDEATAKKVKEELGQGKSFEELAKQYS-ED 169
Query: 331 DRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPL 390
++ GDLG + A K D VS+P++ + I++V +
Sbjct: 170 TGSKEKGGDLGFF-GAGKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTD-------I 221
Query: 391 DDRSVRFEVNQAVAREQLAAQ 411
+ FE ++A +++L A+
Sbjct: 222 KEPEKSFEQSKADIKKELVAK 242
>gb|AAM25688.1| (AE013197) Parvulin-like peptidyl-prolyl isomerase
[Thermoanaerobacter tengcongensis]
Length = 306
Score = 48.1 bits (113), Expect = 1e-04
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
KV+D++ + YY + E + ++A HI +AD+ +A+ +Y L G F + YS+
Sbjct: 148 KVTDEELKKYYDEHKESFE---VMRARHILVADEKTAEDIYQRLMKGEDFAALAKEYSI- 203
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVR 379
D +D GDLG P + + A K +S+P++ + I++
Sbjct: 204 DTATKDNGGDLGEF-PHGVMVPEFEEAAFSLKLGEISKPVKTQYGYHIIK 252
>gb|AAL51305.1| (AE009455) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Brucella melitensis
16M]
Length = 331
Score = 47.8 bits (112), Expect = 1e-04
Identities = 31/164 (18%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 244 RHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQ 303
R +L + L++++ + + K+SD D A Y + + +V+A HI + +
Sbjct: 128 RMEFLRERALHNEYFKNA-----IVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTK 182
Query: 304 ASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKAD 363
A+ + +L G F++ + S D GDLG + + ++ +
Sbjct: 183 EEAEAIIKKLEGGAKFEDLAKASS--TDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGE 240
Query: 364 TVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQ 407
+P++ + ++++ R +Q P D+ V+ ++ + RE+
Sbjct: 241 YTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ-VKDQIRSIIMRER 283
>gb|AAN30835.1|AE014483_14 (AE014483) peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
Length = 331
Score = 47.8 bits (112), Expect = 1e-04
Identities = 31/164 (18%), Positives = 72/164 (43%), Gaps = 8/164 (4%)
Query: 244 RHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQ 303
R +L + L++++ + + K+SD D A Y + + +V+A HI + +
Sbjct: 128 RMEFLRERALHNEYFKNA-----IVDKISDADVRARYDKEIAAMPPQVEVRARHILVKTK 182
Query: 304 ASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKAD 363
A+ + +L G F++ + S D GDLG + + ++ +
Sbjct: 183 EEAEAIIKKLEGGAKFEDLAKASS--TDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGE 240
Query: 364 TVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQ 407
+P++ + ++++ R +Q P D+ V+ ++ + RE+
Sbjct: 241 YTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ-VKDQIRSIIMRER 283
>emb|CAD14044.1| (AL646059) PROBABLE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE (ROTAMASE
C) PROTEIN [Ralstonia solanacearum]
Length = 498
Score = 47.8 bits (112), Expect = 1e-04
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 290 VAQVQAAHI--RLADQASADKVYAELR-------NGLAFDEAVRRYSLADDRDRDPPGDL 340
VAQ Q HI + SAD +L +G F +A RRYS D G+L
Sbjct: 351 VAQTQVRHILIKTGPTMSADDARRQLAGLRDRIVHGYDFGDAARRYS--QDTSASAGGEL 408
Query: 341 GLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVN 400
G + P + + L++ + VSQP++ +++V R + ++P+D + R
Sbjct: 409 GWVSPGQLVPEFEQAMGLLKPGE-VSQPVQSQFGLHLIQVEGRREAEVPVDRQ--RDYAR 465
Query: 401 QAVAREQLAAQFETRLRNLLAGARVE 426
+ +++ A +E LR L A VE
Sbjct: 466 SVIREQKVQAAYEDWLRQLRDSAHVE 491
>gb|AAK04063.1| (AE006234) unknown [Pasteurella multocida]
Length = 626
Score = 47.0 bits (110), Expect = 2e-04
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
+VSD + YY+ N Y + Q + +HI++A +A A ++Y L++G F SL
Sbjct: 249 QVSDVEIAQYYQDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDGANFAGLASARSL- 307
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSR-EDRQL 388
D + GDL + A + SQP+++D F I+ V R E L
Sbjct: 308 DKISAENGGDLSWASAGTFP-KAFEEAANALQVGQFSQPVKVDDQFHIILVTERKEPSTL 366
Query: 389 PLDDRSVRFEVNQAVAREQLAAQFETRLRN 418
PL+ V + Q+A Q L N
Sbjct: 367 PLE-----------VVKTQIADQIRQNLVN 385
>gb|AAC22665.1| (U32781) peptidyl-prolyl cis-trans isomerse, putative [Haemophilus
influenzae Rd]
Length = 594
Score = 47.0 bits (110), Expect = 2e-04
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
+V+D + YY+ N ++ AHI+ A++ A Y EL+ G F + + SL
Sbjct: 221 QVTDVEIAQYYQDNKAQFMTQ---HLAHIQFANEQDAKVAYEELQKGANFADVAKAKSL- 276
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLP 389
D + GDLG + + A +Q SQP+ +DG + IV V+ R+ + L
Sbjct: 277 DKISGENGGDLGWVNENELPKAFEDAAAALQ-VGQYSQPINVDGNYHIVLVQERKAQSL- 334
Query: 390 LDDRSVRFEVNQAVAREQLAAQF 412
+V+ ++ V + + +++
Sbjct: 335 ---ENVKAQIADLVRKSLMESRY 354
>emb|CAA74418.1| (Y14077) 33kDa lipoprotein [Bacillus subtilis]
Length = 292
Score = 46.6 bits (109), Expect = 3e-04
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
KV+D D + Y+ L+ +++A+HI +AD+ +A++V +L+ G F++ + YS
Sbjct: 120 KVTDADIKEYWE-GLK-----GKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYS-- 171
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVR 379
D GDLG + + K A K VS P++ + I++
Sbjct: 172 TDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIK 221
>emb|CAB12835.1| (Z99109) molecular chaperone [Bacillus subtilis subsp. subtilis
str. 168]
Length = 292
Score = 46.6 bits (109), Expect = 3e-04
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
KV+D D + Y+ L+ +++A+HI +AD+ +A++V +L+ G F++ + YS
Sbjct: 120 KVTDADIKEYWE-GLK-----GKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYS-- 171
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVR 379
D GDLG + + K A K VS P++ + I++
Sbjct: 172 TDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIK 221
>emb|CAA40543.1| (X57271) 33kDa lipoprotein [Bacillus subtilis]
Length = 292
Score = 46.6 bits (109), Expect = 3e-04
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
KV+D D + Y+ L+ +++A+HI +AD+ +A++V +L+ G F++ + YS
Sbjct: 120 KVTDADIKEYWE-GLK-----GKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYS-- 171
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVR 379
D GDLG + + K A K VS P++ + I++
Sbjct: 172 TDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIK 221
>dbj|BAB79974.1| (AP003186) hypothetical protein [Clostridium perfringens str. 13]
Length = 248
Score = 46.2 bits (108), Expect = 4e-04
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 271 VSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNG-LAFDEAVRRYSLA 329
V+D +A+A+Y + E + + V A HI +A + A KV E+ +G + F++A +YS
Sbjct: 94 VTDDEAKAFYEEHKENFVELETVTAKHILVASEEEAKKVEEEIASGSITFEDAANKYSSC 153
Query: 330 DDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLP 389
+++ G+LG + + + A + VS P++ + +++V + + +
Sbjct: 154 PSKEQG--GNLGSF-SKGMMVPEFEEAAFNLELGVVSAPVKTQFGYHLIKVEDKTEAKTK 210
Query: 390 LDDRSVRFEVNQAVAREQ 407
+ VN + Q
Sbjct: 211 AFEDVKEQVVNMLIQERQ 228
>dbj|BAC12039.1| (AP004593) protein secretion (post-translocation molecular
chaperone) [Oceanobacillus iheyensis HTE831]
Length = 303
Score = 45.8 bits (107), Expect = 5e-04
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLA 329
++ +++ +YY +Y + V+ +HI + D +A++VY EL +G +F R YS+
Sbjct: 144 EIPEEELRSYYDTYGNQYDFSSSVKLSHILVEDMETAEQVYQELEDGASFRLLAREYSI- 202
Query: 330 DDRDRDPPGDLGLI-RPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQL 388
DD R G +G I LD A + T S+P + + I+ + R+L
Sbjct: 203 DDETRQNGGYMGSIYTSSQFLLDSYETQAANMENHTYSEPFQAENGVAIMYLH----RKL 258
Query: 389 P 389
P
Sbjct: 259 P 259
>emb|CAB85417.1| (AL162758) putative rotamase [Neisseria meningitidis Z2491]
Length = 347
Score = 42.7 bits (99), Expect = 0.004
Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 9/206 (4%)
Query: 222 ARDGFGPAERQGVRTLVRDKLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYR 281
A PA+R+ + + VR + + Q S+ E DA E A K E
Sbjct: 148 ALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEA--EIDAFLEQAQKQGITLPEGAPL 205
Query: 282 RNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLG 341
R + + + + + +++ K+Y E R+G F R+YS D GDLG
Sbjct: 206 RQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS--QDASAGNGGDLG 263
Query: 342 LIRPQDG-RLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVN 400
DG + + K V P+R + I+++ D P +R V
Sbjct: 264 WF--ADGVMVPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVRDAGTP--QERIRNSVR 319
Query: 401 QAVAREQLAAQFETRLRNLLAGARVE 426
Q + +++ LR+L +GA V+
Sbjct: 320 QYIFQQKAEQATVNLLRDLHSGAYVD 345
>gb|AAF40735.1| (AE002385) peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis MC58]
Length = 348
Score = 42.7 bits (99), Expect = 0.004
Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 9/206 (4%)
Query: 222 ARDGFGPAERQGVRTLVRDKLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYR 281
A PA+R+ + + VR + + Q S+ E DA E A K E
Sbjct: 149 ALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSEA--EIDAFLEQAQKQGITLPEGAPL 206
Query: 282 RNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLG 341
R + + + + + +++ K+Y E R+G F R+YS D GDLG
Sbjct: 207 RQYRAQHILIKADSENAAVGAESTIRKIYGEARSGTDFSSLARQYS--QDASAGNGGDLG 264
Query: 342 LIRPQDG-RLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVN 400
DG + + K V P+R + I+++ D P +R V
Sbjct: 265 WF--ADGVMVPAFEEAVHALKPGQVGAPVRTQFGWHIIKLNEVRDAGTP--QERIRNSVR 320
Query: 401 QAVAREQLAAQFETRLRNLLAGARVE 426
Q + +++ LR+L +GA V+
Sbjct: 321 QYIFQQKAEQATVNLLRDLHSGAYVD 346
>dbj|BAC59184.1| (AP005076) peptidyl-prolyl cis-trans isomerse D [Vibrio
parahaemolyticus]
Length = 619
Score = 42.7 bits (99), Expect = 0.004
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 270 KVSDKDAEAYYRRNLERYRNVAQVQAAHIRLA--DQASADKVYAELRNGLAFDEAVRRYS 327
+V+D+D + YY +L++Y + Q + AHI + D+A A + EL G F AV +
Sbjct: 248 QVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGADF-AAVAQEK 306
Query: 328 LADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQKADTVSQPMRIDGAFEIVRVRSREDR- 386
D + GDLG I ++ +S ++ D + I+++ +D
Sbjct: 307 SDDFGSAENGGDLGWIERDVMDPAFEEAAFALKNPGDMSGLVKSDFGYHIIKLEELKDAV 366
Query: 387 QLPLDDRSVRFEVNQAVAREQLAAQF 412
P D+ V E+ Q + ++ QF
Sbjct: 367 AKPFDE--VAAEIKQELVDQKAVDQF 390
>gb|AAF09662.1|AE001870_1 (AE001870) peptidyl-prolyl cis-trans isomerse, putative, PpiC
family [Deinococcus radiodurans]
Length = 677
Score = 42.4 bits (98), Expect = 0.006
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 17/180 (9%)
Query: 257 FHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNG 316
+ ++D LR+ +D + +AYY N +Y+ Q+ I + D+A A + A+ R G
Sbjct: 172 YQRKTDELRKAVPAPTDAELKAYYDLNKSKYQAEPQIVGRQIVVTDKAKAQSLLAQARGG 231
Query: 317 LAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGR-----LDLLRKTALIQ-----KADTVS 366
F + + +++DR G + P DG L TA+ + K ++
Sbjct: 232 ADF-AVLASANSTENKDRG-----GALAPLDGNQPRPVLQAALPTAVGEAAFRLKNGGLT 285
Query: 367 QPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVE 426
+ G F IV+V Q P + +V AV +++ A E +L A+VE
Sbjct: 286 DVIESGGKFYIVKVEKFLPGQ-PKTFEQAKTDVVSAVRQQKQNAALEKWSDDLRKNAQVE 344
>dbj|BAB82189.1| (AP003194) probable protein export protein [Clostridium perfringens
str. 13]
Length = 342
Score = 42.4 bits (98), Expect = 0.006
Identities = 34/154 (22%), Positives = 79/154 (51%), Gaps = 16/154 (10%)
Query: 270 KVSDKDAEAYYRRNLERY-RNVAQVQAAHIRLADQASADKVYAELRNG-LAFDEAVRRYS 327
KV+D+DA+ YY N +++ + V H+ ++ A K Y E+++G F++ +Y
Sbjct: 168 KVTDEDAQKYYDENKQQFVAKDSGVLTKHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYQ 227
Query: 328 LADDRDRDPPGD-LGLIRPQDGRL-----DLLRKTALIQKADTVSQPMRIDGAFEIVRVR 381
++ P + LG++ ++ L D L+ K +S+P++ + I++
Sbjct: 228 NNKSENKKPIAENLGVVPAENSGLVQEFVDGLKPL----KEGEISKPIKTQFGYHIIQAG 283
Query: 382 SREDR--QLPLDDRSVRFEVNQAVAREQLAAQFE 413
+ ++ QLP D+ V+ ++ Q + +++ + +F+
Sbjct: 284 ATYEKGAQLPFDE--VKSQIIQILKQQKDSEKFK 315
>gb|AAL03418.1| (AE008642) protein export protein prsA precursor [Rickettsia
conorii]
Length = 282
Score = 42.0 bits (97), Expect = 0.007
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 267 LAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRY 326
+ ++DK + Y + + + Q++ AHI + Q A+ + +L G F +
Sbjct: 115 IKSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGGNFTKLAEEL 174
Query: 327 SLADDRDRDPPGDLG-LIRPQDGRL-DLLRKTALIQKADTVSQPMRIDGAFEIVRVRSRE 384
SL D G +G ++ Q G+L K A K + VS P++ D + I++V ++
Sbjct: 175 SL-DKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVNEVSTPVKTDFGWHIIKVLEKK 233
Query: 385 DRQLPLDDRSVRFEVNQAVAREQL 408
+P + + + ++ +A E L
Sbjct: 234 PVPIPTKEEA-KVTIDNILAAEVL 256
>emb|CAA61657.1| (X89470) parvulin, PPIase-like protein [Rickettsia prowazekii]
Length = 282
Score = 41.6 bits (96), Expect = 0.010
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 267 LAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRY 326
+ ++DK + Y + ++ + Q++ AHI + Q A+ V +L G F + +
Sbjct: 115 IKSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFTKLAEEF 174
Query: 327 SLADDRDRDPPGDLG-LIRPQDGRL-DLLRKTALIQKADTVSQPMRIDGAFEIVRVRSRE 384
SL D G +G +I Q G+L + A K + VS P++ + I++V ++
Sbjct: 175 SL-DKATASNGGIIGYIILNQPGQLVPEFEQKAFALKVNEVSTPVKTSFGWHIIKVLEKK 233
Query: 385 DRQLPLDDRSVRFEVNQAVAREQL 408
+P + + + ++ +A E L
Sbjct: 234 PVPIPTKEEA-KVTIDNILAAEIL 256
>emb|CAC10161.1| (AJ279071) parvulin-like PPIase [Rickettsia prowazekii]
Length = 282
Score = 41.6 bits (96), Expect = 0.010
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 267 LAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRY 326
+ ++DK + Y + ++ + Q++ AHI + Q A+ V +L G F + +
Sbjct: 115 IKSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFTKLAEEF 174
Query: 327 SLADDRDRDPPGDLG-LIRPQDGRL-DLLRKTALIQKADTVSQPMRIDGAFEIVRVRSRE 384
SL D G +G +I Q G+L + A K + VS P++ + I++V ++
Sbjct: 175 SL-DKATASNGGIIGYIILNQPGQLVPEFEQKAFALKVNEVSTPVKTSFGWHIIKVLEKK 233
Query: 385 DRQLPLDDRSVRFEVNQAVAREQL 408
+P + + + ++ +A E L
Sbjct: 234 PVPIPTKEEA-KVTIDNILAAEIL 256
>emb|CAA15023.1| (AJ235272) PROTEIN EXPORT PROTEIN PRSA PRECURSOR (prsA) [Rickettsia
prowazekii]
Length = 282
Score = 41.6 bits (96), Expect = 0.010
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 267 LAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRY 326
+ ++DK + Y + ++ + Q++ AHI + Q A+ V +L G F + +
Sbjct: 115 IKSNITDKMFDDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKLSKGGNFTKLAEEF 174
Query: 327 SLADDRDRDPPGDLG-LIRPQDGRL-DLLRKTALIQKADTVSQPMRIDGAFEIVRVRSRE 384
SL D G +G +I Q G+L + A K + VS P++ + I++V ++
Sbjct: 175 SL-DKATASNGGIIGYIILNQPGQLVPEFEQKAFALKVNEVSTPVKTSFGWHIIKVLEKK 233
Query: 385 DRQLPLDDRSVRFEVNQAVAREQL 408
+P + + + ++ +A E L
Sbjct: 234 PVPIPTKEEA-KVTIDNILAAEIL 256
Database: gbbct
Posted date: Sep 29, 2003 6:22 PM
Number of letters in database: 35,829,034
Number of sequences in database: 119,422
Database: /blastdb/gbbct/gbbct2.aso
Posted date: Sep 29, 2003 6:23 PM
Number of letters in database: 46,604,961
Number of sequences in database: 153,703
Database: /blastdb/gbbct/gbbct3.aso
Posted date: Sep 29, 2003 6:24 PM
Number of letters in database: 37,964,456
Number of sequences in database: 126,043
Database: /blastdb/gbbct/gbbct4.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 44,801,584
Number of sequences in database: 150,186
Database: /blastdb/gbbct/gbbct5.aso
Posted date: Sep 29, 2003 6:29 PM
Number of letters in database: 3,182,186
Number of sequences in database: 10,611
Lambda K H
0.321 0.138 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,057,780
Number of Sequences: 559965
Number of extensions: 5781411
Number of successful extensions: 16607
Number of sequences better than 1.0e-02: 30
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 16593
Number of HSP's gapped (non-prelim): 34
length of query: 428
length of database: 168,382,221
effective HSP length: 119
effective length of query: 309
effective length of database: 101,746,386
effective search space: 31439633274
effective search space used: 31439633274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 96 (41.6 bits)