Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|10117 COG0242, Def, N-formylmethionyl-tRNA deformyl... 235 6e-63
gnl|CDD|25734 pfam01327, Pep_deformylase, Polypeptide defor... 178 8e-46
gnl|CDD|20922 KOG3137, KOG3137, Peptide deformylase [Transl... 127 1e-30
gnl|CDD|18748 KOG0955, KOG0955, PHD finger protein BR140/LI... 27 3.4
gnl|CDD|20112 KOG2326, KOG2326, DNA-binding subunit of a DN... 26 4.8
>gnl|CDD|10117 COG0242, Def, N-formylmethionyl-tRNA deformylase [Translation,
ribosomal structure and biogenesis]
Length = 168
Score = 235 bits (600), Expect = 6e-63
Identities = 100/168 (59%), Positives = 123/168 (73%), Gaps = 3/168 (1%)
Query: 1 MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Sbjct: 1 MAIREIVKYPDPRLRQVAKPVEEVDDELRQLIDDMLETMYAAEGVGLAAPQIGISKRIFV 60
Query: 61 MDLSED---KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDG 117
Sbjct: 61 IDVEEDGRPKEPPLVLINPEIISKSEETLTGEEGCLSVPGVRGEVERPERITVKYLDRNG 120
Query: 118 NPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHR 165
Sbjct: 121 KPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLKKKLKKLKK 168
>gnl|CDD|25734 pfam01327, Pep_deformylase, Polypeptide deformylase
Length = 154
Score = 178 bits (452), Expect = 8e-46
Identities = 74/153 (48%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Query: 3 ILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMD 62
Sbjct: 1 VLPIRIDGDPVLRKPAKPVTKVDDELKKLIDDMLETMYAAPGVGLAAPQIGISKRLIVID 60
Query: 63 LSEDKS--EPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPF 120
Sbjct: 61 VEDDRPAEGPLVLINPKILEHSGEKCTGGEGCLSVPEVYGYVPRAERITVTGLDEEGEPI 120
Query: 121 EEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKR 153
Sbjct: 121 TIEATGLFARCIQHEIDHLNGVLFYDRINPLKP 153
>gnl|CDD|20922 KOG3137, KOG3137, Peptide deformylase [Translation, ribosomal
structure and biogenesis]
Length = 267
Score = 127 bits (320), Expect = 1e-30
Identities = 65/177 (36%), Positives = 98/177 (55%), Gaps = 19/177 (10%)
Query: 4 LNILEFPDPRLRTIAKPVE---VVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVV 60
Sbjct: 79 LKIVEYGDPVLRAKAKRVDRAQIGDENLQNLVDAMFDVMRKTDGVGLSAPQVGVPVQLMV 138
Query: 61 MDLSED-------------KSEP---RVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDR 104
Sbjct: 139 LEPAGALCRECPEPGRAERQMEPFKLIVLVNPKLKKYSDKLVPFDEGCLSVPGFYAEVVR 198
Query: 105 PQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLE 161
Sbjct: 199 PQSVKIDGRDITGERFSISASGWPARIFQHEYDHLEGVLFFDKMTDRTFDSVREELE 255
>gnl|CDD|18748 KOG0955, KOG0955, PHD finger protein BR140/LIN-49 [General function
prediction only]
Length = 1051
Score = 26.5 bits (58), Expect = 3.4
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 93 LSVPGFYENVDRPQKVRI----KALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVD 146
Sbjct: 185 VSIDTFELLVDRLEKESYFKNYELGDPKDALLEE--DAVCCICLDGECQNSNVIVFCD 240
>gnl|CDD|20112 KOG2326, KOG2326, DNA-binding subunit of a DNA-dependent protein
kinase (Ku80 autoantigen) [Replication, recombination and
repair]
Length = 669
Score = 26.1 bits (57), Expect = 4.8
Identities = 24/101 (23%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 64 SEDKSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRI-KALDRDGNPFEE 122
Sbjct: 420 SEVNMCPTCAQLIAVSNLIDEMKLVKSDTLCRLPFAPPKLDMRVHRLPQLLLHTATSP-- 477
Query: 123 VAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQ 163
Sbjct: 478 --EPLLPETNQHLIDELNPPRFVDSMDTDELPKIKLGFYLQ 516
Lambda K H
0.320 0.140 0.402
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 2,926,246
Number of Sequences: 0
Number of extensions: 271486
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of query: 0
length of database: 5,506,404
effective HSP length: 87
effective length of query: -87
effective length of database: 3,937,011
effective search space: -342519957
effective search space used: 318897891
T: 11
A: 40
X1: 1600 (739.5 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1897.7 bits)
S2: 60 (27.5 bits)