RPS-BLAST 2.2.6 [Apr-09-2003]

Database: All 
           18,039 sequences; 5,506,404 total letters



Query= 3640 (217 letters)

Distribution of 4 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|CDD|11449  COG1738, COG1738, Uncharacterized conserved p...   162   5e-41 
gnl|CDD|17175  pfam02592, DUF165, Uncharacterized ACR, YhhQ ...   129   5e-31 
gnl|CDD|20387  KOG2601, KOG2601, Iron transporter [Inorganic...    28   1.2   
gnl|CDD|24957  pfam06084, Cytomega_TRL10, Cytomegalovirus TR...    27   3.7   

>gnl|CDD|11449 COG1738, COG1738, Uncharacterized conserved protein [Function unknown] Length = 233 Score = 162 bits (412), Expect = 5e-41 Identities = 91/221 (41%), Positives = 127/221 (57%), Gaps = 7/221 (3%)
Query:  1    MSASSPAAWRGTLAGLIAFHIVIIIASNYLVQLPITLFGWHTTWGAFSFPFIFLATDLTV  60
Sbjct:  14   FVLFGLAYRFFGLIGLAAWFALLIIISNILVQKPVEIFGFVLTWGAFLYPFIFLATDLTV  73

Query:  61   RLLGKGPARLVIARVMIPALIASYVVSVLFQ---EAAFRGFSALLEFNTFVARISLASFL  117
Sbjct:  74   EIYGKKEARKAVFLGFFSALVFSILTQIALHFPPSGSDEAQEALAALFSFVPRIALASLL  133

Query:  118  AYVLGQILDIQVFDRLRR---SRHWWTAPVASTILGNLLDTFTFFFVAFWRSDNPFMAQH  174
Sbjct:  134  AYIVSQLLDVWVFNRLKRRTGGKSLWLRPNASTLVSQLIDTVIFFFIAFYVSPDGFMAE-  192

Query:  175  WVEIATVDYGVKLSISLLLFVPLYGMLLNGILKMLPGRPQS  215
Sbjct:  193  WIEIIFGDYLVKLLIAVLDTPFVYGAVLWVLRKKLPEVTKI  233


>gnl|CDD|17175 pfam02592, DUF165, Uncharacterized ACR, YhhQ family COG1738 Length = 155 Score = 129 bits (326), Expect = 5e-31 Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 8/157 (5%)
Query:  37   LFGWHTTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQ---EA  93
Sbjct:  1    IFGFHATLGNVLFPFIFLATDLLVEIYGKKEARKAVFLGFLSQLIFLILMQIALHFPPSP  60

Query:  94   AFRGFSALLEFNTFVARISLASFLAYVLGQILDIQVFDRLRR---SRHWWTAPVASTILG  150
Sbjct:  61   LDQGQEALKALFSPVPRIALASLIAYIISQILDVLLFNFLKRRFPGKHLWLRPNGSTLLS  120

Query:  151  NLLDTFTFFFVAFWRSDNPFMAQHWVEIATVDYGVKL  187
Sbjct:  121  QLIDTFIFSFIAFYGS--VFPAAHWLEIMLFDYLFKL  155


>gnl|CDD|20387 KOG2601, KOG2601, Iron transporter [Inorganic ion transport and metabolism] Length = 503 Score = 28.4 bits (63), Expect = 1.2 Identities = 24/126 (19%), Positives = 38/126 (30%)
Query:  42   TTWGAFSFPFIFLATDLTVRLLGKGPARLVIARVMIPALIASYVVSVLFQEAAFRGFSAL  101
Sbjct:  254  LRDCQSSFPVAGTHSEGFMTNLASRYGILVILPRFSISSFRSAWRVYFNQEVVLPGVSLA  313

Query:  102  LEFNTFVARISLASFLAYVLGQILDIQVFDRLRRSRHWWTAPVASTILGNLLDTFTFFFV  161
Sbjct:  314  LLFFTVLGFGVLMTATLFWPGSPMYIIGIGRGISAGTGLAATVHYPLMQSRTNLLRTGLW  373

Query:  162  AFWRSD  167
Sbjct:  374  SFWSQD  379


>gnl|CDD|24957 pfam06084, Cytomega_TRL10, Cytomegalovirus TRL10 protein. This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulfide-linked complex Length = 169 Score = 27.0 bits (59), Expect = 3.7 Identities = 9/16 (56%), Positives = 12/16 (75%)
Query:  34   PITLFGWHTTWGAFSF  49
Sbjct:  70   PITMLGAYSAWGAGSF  85

Lambda     K      H
   0.331    0.143    0.448 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 3,673,191
Number of Sequences: 0
Number of extensions: 351545
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of query: 0
length of database: 5,506,404
effective HSP length: 90
effective length of query: -90
effective length of database: 3,882,894
effective search space: -349460460
effective search space used: 493127538
T: 11
A: 40
X1: 1500 (717.1 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4000 (1915.1 bits)
S2: 58 (26.6 bits)