Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|11273 COG1560, HtrB, Lauroyl/myristoyl acyltransfer... 290 2e-79
gnl|CDD|3653 LOAD_LSAT, LSAT, Late Stage Acyl transferases 247 2e-66
gnl|CDD|5038 pfam03279, Lip_A_acyltrans, Bacterial lipid A ... 159 7e-40
gnl|CDD|18502 KOG0708, KOG0708, Membrane-associated guanyla... 27 5.9
gnl|CDD|10546 COG0677, WecC, UDP-N-acetyl-D-mannosaminurona... 26 9.7
>gnl|CDD|11273 COG1560, HtrB, Lauroyl/myristoyl acyltransferase [Cell envelope
biogenesis, outer membrane]
Length = 308
Score = 290 bits (745), Expect = 2e-79
Identities = 117/296 (39%), Positives = 163/296 (55%), Gaps = 2/296 (0%)
Query: 1 MEKFKGALVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSET 60
Sbjct: 13 PRYWLTWLGVGALWLLVLLPYPFLRRLGDGLGRLAGRLLKRRRKIARRNLALCFPEKSEA 72
Query: 61 ELEKLVGQSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDGLVGITSH 120
Sbjct: 73 EREKIVKESFASMGRALLETGMAWFRPPERILR-RVEVEGLEHLEEALANGRGVILVTPH 131
Query: 121 LGNWEVLNHFYCSYAKPII-FYRPPKLKAVDELLKKQRVQLGNRVAPSTPEGILSVIKEV 179
Sbjct: 132 FGNWELGGRALAQQGPKVTAMYRPPKNPLLDWLITRGRERFGGRLLPRKGEGIRQLIKAL 191
Query: 180 KKGGCVGIPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGY 239
Sbjct: 192 KQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVFPVRNPDGSGY 251
Query: 240 KVILEAAPADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRFKNRPDGEKKWY 295
Sbjct: 252 TLHIHPPMTDDPSEDVEADAQRMNDFVEKWIRAHPEQYMWLHRRFKTRPEGEPSLY 307
>gnl|CDD|3653 LOAD_LSAT, LSAT, Late Stage Acyl transferases
Length = 278
Score = 247 bits (633), Expect = 2e-66
Identities = 103/279 (36%), Positives = 155/279 (55%), Gaps = 4/279 (1%)
Query: 8 LVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSETELEKLVG 67
Sbjct: 2 LGVGILRLVAFLPEPALDFLGRGLGRLAFKLGKRRRKIARINLALCFPEMSEAEREKIIR 61
Query: 68 QSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEE-ALASGDGLVGITSHLGNWEV 126
Sbjct: 62 QSLESFGQTILETAELWFWSKDRIIKRV-EVIGLENLKQKALAQGKGVILLVPHFGNWDL 120
Query: 127 LNHFYCSYAKP-IIFYRPPKLKAVDELLKKQRVQLGNRVAPSTPEGILSVIKEVKKGGCV 185
Sbjct: 121 AGLWLAKYYGPMIAVYRPLKNPLLDWLITSYRERFGGKVLPRK-GGIKGLLKALKKGEVV 179
Query: 186 GIPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGYKVILEA 245
Sbjct: 180 GILPDQDLGPSDSVFVPFFATPAATTTGPAKLARKTGALVIPVFPIRNDDGSGYTVIPSP 239
Query: 246 APADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRF 284
Sbjct: 240 AMDSSGTDDVEQIAQAMNKIIEKFIAKHPEQYFWLHRRW 278
>gnl|CDD|5038 pfam03279, Lip_A_acyltrans, Bacterial lipid A biosynthesis
acyltransferase
Length = 295
Score = 159 bits (404), Expect = 7e-40
Identities = 89/279 (31%), Positives = 142/279 (50%), Gaps = 3/279 (1%)
Query: 8 LVVGALRLFALLPWRAVQGVGAGIGWLMWKLPNRSREVVRINLSKCFPELSETELEKLVG 67
Sbjct: 18 LGIGVLRLLAALPYSALRRLGKGLGRLAGRFGKRRRKIARKNLALCFPEMSEAEREKIID 77
Query: 68 QSLMDIGRTLTESACAWIWPPEKSLRYIREVEGMEVLEEALASGDGLVGITSHLGNWEVL 127
Sbjct: 78 QSLASFGMAILETAELAFRPDSKIAKRT-EVIGLENIKKALAQGRGVILLVPHFGNWDLP 136
Query: 128 NHFYCSYAKPIIFYRPPKLKA-VDELLKKQRVQLGNRVAPSTPEGILSVIKEVKKGGCVG 186
Sbjct: 137 GLVLAQYYPGMATMFPNLKNPLLDWLITSGRERFGGKMLPRK-NGIKGLIKALRQGEVVY 195
Query: 187 IPADPEPARTAGLFVPYLGTTALISKFVPQLLSRGKARGVFFHAVRLPDGSGYKVILEAA 246
Sbjct: 196 YLPDQDLGPKDSVFVPFFGTPKATTTSPAKLARKTGAAVIPVFPWRNGDGSGYTAIVHPA 255
Query: 247 PADMYDKDLEVSVAAMSRELAKYVRAYPSQYMWSMKRFK 285
Sbjct: 256 LDLTPTEDVEQIAQAMNKIVEKFIAPHPEQYMWLHRRWK 294
>gnl|CDD|18502 KOG0708, KOG0708, Membrane-associated guanylate kinase MAGUK
(contains PDZ, SH3, HOOK and GUK domains) [Nucleotide
transport and metabolism]
Length = 359
Score = 26.8 bits (59), Expect = 5.9
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 130 FYCSYAKPIIFYRPPKLKAVDELLKK 155
Sbjct: 182 LDSNYLRPVLILGPLLDRLLDNLVNE 207
>gnl|CDD|10546 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell
envelope biogenesis, outer membrane]
Length = 436
Score = 26.3 bits (58), Expect = 9.7
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 94 YIREVEGMEVLEEALASGDGLVGITSHLGNWEVLNHFYCSYAKPIIFYRPPKL------- 146
Sbjct: 54 YIEEPDLDEVVKEAVESGK--LRATTDPEELKECDVFIICVPTPLKKYREPDLSYVESAA 111
Query: 147 KAVDELLKK-QRVQLGNRVAPSTPEGILSVIKEVKKGGCVG 186
Sbjct: 112 RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFG 152
Lambda K H
0.320 0.138 0.425
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 5,160,621
Number of Sequences: 0
Number of extensions: 494640
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of query: 0
length of database: 5,506,404
effective HSP length: 93
effective length of query: -93
effective length of database: 3,828,777
effective search space: -356076261
effective search space used: 773412954
T: 11
A: 40
X1: 1600 (739.1 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1896.7 bits)
S2: 59 (27.1 bits)