Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|10620 COG0752, GlyQ, Glycyl-tRNA synthetase, alpha ... 568 e-163
gnl|CDD|6639 pfam02091, tRNA_synt_2e, Glycyl-tRNA synthetas... 526 e-150
gnl|CDD|9889 COG0013, AlaS, Alanyl-tRNA synthetase [Transla... 32 0.20
gnl|CDD|14302 COG5178, PRP8, U5 snRNP spliceosome subunit [... 29 1.2
gnl|CDD|20870 KOG3085, KOG3085, Predicted hydrolase (HAD su... 29 1.3
gnl|CDD|25824 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase ... 27 5.3
gnl|CDD|19581 KOG1795, KOG1795, U5 snRNP spliceosome subuni... 27 6.2
gnl|CDD|10013 COG0138, PurH, AICAR transformylase/IMP cyclo... 27 8.4
>gnl|CDD|10620 COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subunit [Translation,
ribosomal structure and biogenesis]
Length = 298
Score = 568 bits (1465), Expect = e-163
Identities = 235/298 (78%), Positives = 261/298 (87%)
Query: 5 TPAVRTFQDLILALQNYWAEQGCVVLQPYDMEVGAGTFHTATFLRAIGPETWNAAYVQPS 64
Sbjct: 1 MNKKLTFQGLILTLQNYWAEQGCTILQPYDMEVGAGTFHPATFLRALGPEPWNAAYVQPS 60
Query: 65 RRPTDGRYGENPNRLQHYYQFQVVLKPNPENFQELYLGSLKAIGIDPLVHDIRFVEDNWE 124
Sbjct: 61 RRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWE 120
Query: 125 SPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGIECYPVTGEITYGLERLAMYLQGVDSVYD 184
Sbjct: 121 NPTLGAWGLGWEVWLDGMEVTQFTYFQQVGGLECKPVSGEITYGLERLAMYIQGVDNVYD 180
Query: 185 LVWTDGPFGKVTYGDVFHQNEVEQSTFNFEHANVPKLFELFDFYESEANRLIALELPLPT 244
Sbjct: 181 LEWNDGPGGKVTYGDVFLQNEVEQSKYNFEYADVDMLFRHFDDYEKEAKRLLELGLVLPA 240
Query: 245 YEMVLKASHTFNLLDARRAISVTERQRYILRVRTLARAVAQSYLQARARLGFPMATPE 302
Sbjct: 241 YDYVLKASHTFNLLDARGAISVTERQRYILRIRNLARAVAEAYLESREALGFPLLKKE 298
>gnl|CDD|6639 pfam02091, tRNA_synt_2e, Glycyl-tRNA synthetase alpha subunit
Length = 285
Score = 526 bits (1357), Expect = e-150
Identities = 232/288 (80%), Positives = 257/288 (89%), Gaps = 3/288 (1%)
Query: 11 FQDLILALQNYWAEQGCVVLQPYDMEVGAGTFHTATFLRAIGPETWNAAYVQPSRRPTDG 70
Sbjct: 1 FQQMILTLQEYWASQGCVVMQPYDMEVGAGTFHPATFLRSLGPEPWNVAYVEPSRRPTDG 60
Query: 71 RYGENPNRLQHYYQFQVVLKPNPENFQELYLGSLKAIGIDPLVHDIRFVEDNWESPTLGA 130
Sbjct: 61 RYGENPNRLQHYYQFQVVLKPSPDNIQELYLGSLKALGIDPLDHDIRFVEDNWESPTLGA 120
Query: 131 WGLGWEIWLNGMEVTQFTYFQQVGGIECYPVTGEITYGLERLAMYLQGVDSVYDLVWTDG 190
Sbjct: 121 WGLGWEVWLDGMEITQFTYFQQVGGLECKPVSGEITYGLERLAMYLQGVDNVYDLVWADG 180
Query: 191 PFGKVTYGDVFHQNEVEQSTFNFEHANVPKLFELFDFYESEANRLIALELPLPTYEMVLK 250
Sbjct: 181 P---VTYGDIFLQNEVEQSTYNFETANVDRLFKLFDFYEKEALQLLENGLPLPAYDFVLK 237
Query: 251 ASHTFNLLDARRAISVTERQRYILRVRTLARAVAQSYLQARARLGFPM 298
Sbjct: 238 ASHAFNLLDARGAISVTERQRYILRIRTLARAVAELYYAQREKLGFPL 285
>gnl|CDD|9889 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis]
Length = 879
Score = 31.8 bits (72), Expect = 0.20
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 162 TGEITYGLERLAMYLQGVDSVYD 184
Sbjct: 227 TG---MGLERIAAVLQGVPTNYD 246
>gnl|CDD|14302 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification]
Length = 2365
Score = 29.3 bits (65), Expect = 1.2
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 115 DIRFVEDNWESPTLGAWGLGWEIWLNGMEVTQFTYFQQVGGIECYPVTGEITYGLERLAM 174
Sbjct: 643 YYAFNEGVGKGPGCGFWGPQWRVWLFFLRGHIPLLERYIGNLVTRQFEGRSDYNPKPLTK 702
Query: 175 YLQGVDSVYDL 185
Sbjct: 703 --QRSDSGYDL 711
>gnl|CDD|20870 KOG3085, KOG3085, Predicted hydrolase (HAD superfamily) [General
function prediction only]
Length = 237
Score = 29.1 bits (65), Expect = 1.3
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 90 KPNPENFQELYLGSLKAIGIDPLVHDIRFVEDNWESPTLGAWGLGWEIWLNGMEVTQFTY 149
Sbjct: 168 KPDPRIFQLA----LERLGVKP--EECVHIGDLLENDYEGARNLGWHAILVDNSITALKE 221
Query: 150 FQQVGGIE 157
Sbjct: 222 LEYKLGID 229
>gnl|CDD|25824 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalysing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalysed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme
catalyses the formylation of AICAR with
10-formyl-tetrahydrofolate to yield FAICAR and
tetrahydrofolate. The last step is catalysed by IMP
(Inosine monophosphate) cyclohydrolase EC:3.5.4.10
(IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP
Length = 315
Score = 27.2 bits (60), Expect = 5.3
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 43 HTATFLRAI--------GPETWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVLKPNPE 94
Sbjct: 45 HTAAYDAAIADYFRKQYSPKHPERTFTLPGVRKLSLRYGENPHQQAAFYVDPTLKEGSIA 104
Query: 95 NFQEL 99
Sbjct: 105 TAEQL 109
>gnl|CDD|19581 KOG1795, KOG1795, U5 snRNP spliceosome subunit [RNA processing and
modification]
Length = 2321
Score = 26.9 bits (59), Expect = 6.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 115 DIRFVEDNWESPTLGAWGLGWEIWLN 140
Sbjct: 609 YYRFNTGVGKGPGCGFWAPGWRVWLF 634
>gnl|CDD|10013 COG0138, PurH, AICAR transformylase/IMP cyclohydrolase PurH (only IMP
cyclohydrolase domain in Aful) [Nucleotide transport and
metabolism]
Length = 515
Score = 26.7 bits (59), Expect = 8.4
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 45 ATFLRAIGPETWNAAYVQPSRRPTDGRYGENPNRLQHYYQF 85
Sbjct: 187 ANYFSELLGGEFPEQLNLSFTKKQDLRYGENPHQSAAFYRD 227
Lambda K H
0.321 0.138 0.423
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 5,577,383
Number of Sequences: 0
Number of extensions: 565671
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of query: 0
length of database: 5,506,404
effective HSP length: 94
effective length of query: -94
effective length of database: 3,810,738
effective search space: -358209372
effective search space used: 842173098
T: 11
A: 40
X1: 1600 (741.1 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1902.0 bits)
S2: 58 (26.6 bits)