Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|27530 pfam07423, DUF1510, Protein of unknown functi... 34 0.054
gnl|CDD|7810 pfam00882, Zn_dep_PLPC, Zinc dependent phospho... 30 0.75
gnl|CDD|2898 pfam02388, FemAB, FemAB family. The femAB oper... 28 2.6
gnl|CDD|22441 KOG4667, KOG4667, Predicted esterase [Lipid t... 27 5.2
gnl|CDD|12021 COG2348, COG2348, Uncharacterized protein inv... 26 9.4
gnl|CDD|13511 COG4263, NosZ, Nitrous oxide reductase [Energ... 27 9.6
>gnl|CDD|27530 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown
Length = 185
Score = 33.8 bits (76), Expect = 0.054
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 172 TRSDWQEHYGDFQTAAFQPIDNLATYWFEQFRAAPSLQTIGYALHATGDVAQPHHVWITS 231
Sbjct: 114 TSVDWQEKRKAFSAATDIPISN-TSLWFVEQGADPATQAIG-TLSTKANPDKAYRVYITW 171
Query: 232 ANGHSSWEGW 241
Sbjct: 172 VDG----EGW 177
>gnl|CDD|7810 pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C
Length = 278
Score = 30.0 bits (67), Expect = 0.75
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 193 NLATYWFEQFRAAPSLQTIGYALHATGDVAQPHH---VWITSANGHSSWEGWVDDHYASE 249
Sbjct: 131 ALARNEWEKGNFKQATFYLGLALHYLGDINTPYHAANVTAVDSPGHVKYENFVETRKDNY 190
Query: 250 KLND 253
Sbjct: 191 KINT 194
>gnl|CDD|2898 pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly
identical approximately 50-kDa proteins involved in the
formation of the Staphylococcal pentaglycine interpeptide
bridge in peptidoglycan. These proteins are also
considered as a factor influencing the level of
methicillin resistance
Length = 409
Score = 28.3 bits (63), Expect = 2.6
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 127 GGYDYRYHKVDGGIADVDWYAMVYLYNRELKREDF-----DTTEAH-------YRQGTRS 174
Sbjct: 325 GGSSNEYRHFMGPYA-LQWEMINYAKKHGIKRYNFYGITGDFSEDAEDYGVYRFKKGFNA 383
Query: 175 DWQEHYGDF 183
Sbjct: 384 YVIEYIGDF 392
>gnl|CDD|22441 KOG4667, KOG4667, Predicted esterase [Lipid transport and metabolism]
Length = 269
Score = 27.2 bits (60), Expect = 5.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 249 EKLNDPAAVANLVGRYDPSKSIRDLLTQ 276
Sbjct: 124 SKYHDIRNVINCSGRYDLKNGINERLGE 151
>gnl|CDD|12021 COG2348, COG2348, Uncharacterized protein involved in methicillin
resistance [Defense mechanisms]
Length = 418
Score = 26.4 bits (58), Expect = 9.4
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 127 GGYDYRYHKVDGGIADVDWYAMVYLYNRELKREDFDTTEAHYRQGTRSDWQEHYGDFQ 184
Sbjct: 322 GGSSDEYNKFMAPYL-LQWEAIKYAKKRGIKWYNFYGIP-----GDFDESSEDYGVYR 373
>gnl|CDD|13511 COG4263, NosZ, Nitrous oxide reductase [Energy production and
conversion]
Length = 637
Score = 26.5 bits (58), Expect = 9.6
Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 215 LHATGDVAQPHHVWITSANGHSSWEGWVDD-----HYASEKLNDPAAVANLVGRYDPSKS 269
Sbjct: 474 IDISGDKMVLVHDGPVFAEPHDPIIVWRRDIPPFAIWSRQDPFFAIAVK------VAKED 527
Query: 270 IRDLLTQTGQVAYARPEPLYDTS 292
Sbjct: 528 GRDLMKVNVVVRSGNKVRVYMTS 550
Lambda K H
0.318 0.133 0.418
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 5,603,353
Number of Sequences: 0
Number of extensions: 546912
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of query: 0
length of database: 5,506,404
effective HSP length: 94
effective length of query: -94
effective length of database: 3,810,738
effective search space: -358209372
effective search space used: 891712692
T: 11
A: 40
X1: 1600 (733.9 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1883.6 bits)
S2: 60 (27.5 bits)