Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|14461 COG5371, COG5371, Golgi nucleoside diphosphat... 35 0.051
gnl|CDD|21043 KOG3258, KOG3258, Parvulin-like peptidyl-prol... 29 2.8
gnl|CDD|24371 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin... 27 7.0
gnl|CDD|25787 pfam01598, Sterol_desat, Sterol desaturase. T... 27 8.9
>gnl|CDD|14461 COG5371, COG5371, Golgi nucleoside diphosphatase [Carbohydrate
transport and metabolism / Posttranslational
modification, protein turnover, chaperones]
Length = 549
Score = 34.6 bits (79), Expect = 0.051
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 255 SDFHHESDALRELAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQASADKVYAELR 314
Sbjct: 161 SDFDTDTVGFADSGGA-LLQIAFEFVPSEIRRCMPIIVTATAGLRLLGDSRSDHVLVSTR 219
Query: 315 NGLAFDEAVRRYSL 328
Sbjct: 220 LGLGANYAFRRYLG 233
>gnl|CDD|21043 KOG3258, KOG3258, Parvulin-like peptidyl-prolyl cis-trans isomerase
[Posttranslational modification, protein turnover,
chaperones]
Length = 133
Score = 28.9 bits (64), Expect = 2.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 293 VQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLG 341
Sbjct: 40 VKVRHILCEKQGKINEAMEKLKSGMKFNEVAAQYS--EDKARQ-GGDLG 85
>gnl|CDD|24371 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family
includes members from the HSP60 chaperone family and the
TCP-1 (T-complex protein) family
Length = 486
Score = 27.5 bits (61), Expect = 7.0
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 53 LLEQALSRVKFNTDPQQLRRGLVENRLLARAVEDQLTAQSR 93
Sbjct: 73 LLKEAEKLINAGLHPTQIIRGY---ELALKKALEALKKLSI 110
>gnl|CDD|25787 pfam01598, Sterol_desat, Sterol desaturase. This family includes C-5
sterol desaturase and C-4 sterol methyl oxidase. Members
of this family are involved in cholesterol biosynthesis
and biosynthesis a plant cuticular wax. These enzymes
contain many conserved histidine residues. Members of
this family are integral membrane proteins
Length = 213
Score = 27.2 bits (60), Expect = 8.9
Identities = 9/22 (40%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 245 HRYLHQIGLYSDF---HHESDA 263
Sbjct: 113 HRLLHHPRLYKYIHKVHHEYIV 134
Lambda K H
0.321 0.138 0.392
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 7,105,965
Number of Sequences: 0
Number of extensions: 674138
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of query: 0
length of database: 5,506,404
effective HSP length: 96
effective length of query: -96
effective length of database: 3,774,660
effective search space: -362367360
effective search space used: 1253187120
T: 11
A: 40
X1: 1600 (740.4 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1900.1 bits)
S2: 54 (25.0 bits)