Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|7560 pfam00308, Bac_DnaA, Bacterial dnaA protein 492 e-140
gnl|CDD|10463 COG0593, DnaA, ATPase involved in DNA replica... 459 e-130
gnl|CDD|11198 COG1484, DnaC, DNA replication protein [DNA r... 65 6e-11
gnl|CDD|8906 cd00009, AAA, AAA-superfamily of ATPases assoc... 58 5e-09
gnl|CDD|21450 KOG3671, KOG3671, Actin regulatory protein (W... 43 2e-04
gnl|CDD|27281 pfam07174, FAP, Fibronectin-attachment protei... 41 0.001
gnl|CDD|18039 KOG0243, KOG0243, Kinesin-like protein [Cytos... 40 0.002
gnl|CDD|11188 COG1474, CDC6, Cdc6-related protein, AAA supe... 40 0.002
gnl|CDD|11199 COG1485, COG1485, Predicted ATPase [General f... 39 0.002
gnl|CDD|22083 KOG4307, KOG4307, RNA binding protein RBM12/S... 38 0.006
gnl|CDD|18822 KOG1029, KOG1029, Endocytic adaptor protein i... 37 0.008
gnl|CDD|19489 KOG1701, KOG1701, Focal adhesion adaptor prot... 37 0.012
gnl|CDD|5035 pfam03276, Gag_spuma, Spumavirus gag protein 37 0.013
gnl|CDD|2228 pfam01695, IstB, IstB-like ATP binding protein... 36 0.016
gnl|CDD|17929 KOG0132, KOG0132, RNA polymerase II C-termina... 37 0.017
gnl|CDD|18361 KOG0566, KOG0566, Inositol-1,4,5-triphosphate... 36 0.021
gnl|CDD|3487 pfam02993, MCPVI, Minor capsid protein VI. Thi... 36 0.026
gnl|CDD|22238 KOG4462, KOG4462, WASP-interacting protein VR... 36 0.028
gnl|CDD|18354 KOG0559, KOG0559, Dihydrolipoamide succinyltr... 35 0.033
gnl|CDD|14817 cd00106, KISc, Kinesin motor, catalytic domai... 36 0.033
gnl|CDD|14902 smart00129, KISc, Kinesin motor, catalytic do... 35 0.040
gnl|CDD|25451 pfam00225, Kinesin, Kinesin motor domain 35 0.045
gnl|CDD|26166 pfam03969, AFG1_ATPase, AFG1-like ATPase. Thi... 34 0.078
gnl|CDD|7823 pfam00910, RNA_helicase, RNA helicase. This fa... 34 0.089
gnl|CDD|19699 KOG1913, KOG1913, Regucalcin gene promoter re... 34 0.095
gnl|CDD|23743 pfam05518, Totivirus_coat, Totivirus coat pro... 33 0.14
gnl|CDD|19731 KOG1945, KOG1945, Protein phosphatase 1 bindi... 34 0.14
gnl|CDD|26716 pfam06604, OMP_19, Bacterial outer membrane l... 33 0.15
gnl|CDD|19771 KOG1985, KOG1985, Vesicle coat complex COPII,... 33 0.15
gnl|CDD|19770 KOG1984, KOG1984, Vesicle coat complex COPII,... 33 0.16
gnl|CDD|21616 KOG3837, KOG3837, Uncharacterized conserved p... 33 0.16
gnl|CDD|21868 KOG4090, KOG4090, Uncharacterized conserved p... 33 0.19
gnl|CDD|14462 COG5373, COG5373, Predicted membrane protein ... 33 0.20
gnl|CDD|18698 KOG0905, KOG0905, Phosphoinositide 3-kinase [... 33 0.23
gnl|CDD|10337 COG0464, SpoVK, ATPases of the AAA+ class [Po... 32 0.26
gnl|CDD|22115 KOG4339, KOG4339, RPEL repeat-containing prot... 32 0.27
gnl|CDD|19616 KOG1830, KOG1830, Wiskott Aldrich syndrome pr... 32 0.29
gnl|CDD|4690 pfam02161, Prog_receptor, Progesterone receptor 32 0.37
gnl|CDD|27330 pfam07223, DUF1421, Protein of unknown functi... 32 0.39
gnl|CDD|9153 pfam00429, TLV_coat, ENV polyprotein (coat pol... 32 0.40
gnl|CDD|17959 KOG0162, KOG0162, Myosin class I heavy chain ... 32 0.41
gnl|CDD|22056 KOG4280, KOG4280, Kinesin-like protein [Cytos... 32 0.45
gnl|CDD|17995 KOG0199, KOG0199, ACK and related non-recepto... 32 0.45
gnl|CDD|12124 COG2607, COG2607, Predicted ATPase (AAA+ supe... 31 0.49
gnl|CDD|21998 KOG4222, KOG4222, Axon guidance receptor Dsca... 32 0.50
gnl|CDD|22040 KOG4264, KOG4264, Nucleo-cytoplasmic protein ... 31 0.54
gnl|CDD|18036 KOG0240, KOG0240, Kinesin (SMY1 subfamily) [C... 32 0.54
gnl|CDD|19710 KOG1924, KOG1924, RhoA GTPase effector DIA/Di... 32 0.56
gnl|CDD|24785 pfam05743, Tsg101, Tumour susceptibility gene... 31 0.59
gnl|CDD|17916 KOG0119, KOG0119, Splicing factor 1/branch po... 31 0.59
gnl|CDD|19233 KOG1445, KOG1445, Tumor-specific antigen (con... 31 0.62
gnl|CDD|19154 KOG1365, KOG1365, RNA-binding protein Fusilli... 31 0.77
gnl|CDD|20169 KOG2383, KOG2383, Predicted ATPase [General f... 31 0.81
gnl|CDD|15792 pfam04495, GRASP55_65, GRASP55/65 family. GRA... 31 0.82
gnl|CDD|22080 KOG4304, KOG4304, Transcriptional repressors ... 31 0.82
gnl|CDD|19709 KOG1923, KOG1923, Rac1 GTPase effector FRL [S... 31 0.85
gnl|CDD|6100 pfam00513, Late_protein_L2, Late Protein L2 31 0.86
gnl|CDD|19741 KOG1955, KOG1955, Ral-GTPase effector RALBP1 ... 31 0.90
gnl|CDD|23897 pfam05673, DUF815, Protein of unknown functio... 31 0.94
gnl|CDD|18022 KOG0226, KOG0226, RNA-binding proteins [Gener... 30 0.96
gnl|CDD|22446 KOG4672, KOG4672, Uncharacterized conserved l... 31 1.1
gnl|CDD|20204 KOG2418, KOG2418, Microtubule-associated prot... 31 1.1
gnl|CDD|21435 KOG3655, KOG3655, Drebrins and related actin ... 30 1.1
gnl|CDD|20376 KOG2590, KOG2590, RNA-binding protein LARP/SR... 30 1.1
gnl|CDD|24111 pfam05887, Trypan_PARP, Procyclic acidic repe... 30 1.4
gnl|CDD|25713 pfam01213, CAP, CAP protein 30 1.5
gnl|CDD|24733 pfam04625, DEC-1_N, DEC-1 protein, N terminal... 30 1.5
gnl|CDD|16404 pfam05109, Herpes_BLLF1, Herpes virus major o... 30 1.5
gnl|CDD|20088 KOG2302, KOG2302, T-type voltage-gated Ca2+ c... 30 1.7
gnl|CDD|18038 KOG0242, KOG0242, Kinesin-like protein [Cytos... 30 1.7
gnl|CDD|18537 KOG0743, KOG0743, AAA+-type ATPase [Posttrans... 30 1.8
gnl|CDD|14158 COG5028, COG5028, Vesicle coat complex COPII,... 30 1.8
gnl|CDD|18110 KOG0314, KOG0314, Predicted E3 ubiquitin liga... 30 1.9
gnl|CDD|22365 KOG4590, KOG4590, Signal transduction protein... 30 1.9
gnl|CDD|20679 KOG2893, KOG2893, Zn finger protein [General ... 30 2.0
gnl|CDD|20463 KOG2677, KOG2677, Stoned B synaptic vesicle b... 30 2.0
gnl|CDD|21550 KOG3771, KOG3771, Amphiphysin [Intracellular ... 30 2.0
gnl|CDD|23447 pfam03344, Daxx, Daxx Family. The Daxx protei... 29 2.1
gnl|CDD|19571 KOG1785, KOG1785, Tyrosine kinase negative re... 29 2.1
gnl|CDD|22145 KOG4369, KOG4369, RTK signaling protein MASK/... 29 2.2
gnl|CDD|24679 pfam03154, Atrophin-1, Atrophin-1 family. Atr... 29 2.2
gnl|CDD|21079 KOG3294, KOG3294, WW domain binding protein W... 29 2.2
gnl|CDD|12508 COG3170, FimV, Tfp pilus assembly protein Fim... 29 2.3
gnl|CDD|18187 KOG0391, KOG0391, SNF2 family DNA-dependent A... 29 2.4
gnl|CDD|18866 KOG1074, KOG1074, Transcriptional repressor S... 29 2.5
gnl|CDD|21673 KOG3895, KOG3895, Synaptic vesicle protein Sy... 29 2.6
gnl|CDD|18103 KOG0307, KOG0307, Vesicle coat complex COPII,... 29 2.8
gnl|CDD|20461 KOG2675, KOG2675, Adenylate cyclase-associate... 29 2.9
gnl|CDD|26269 pfam04554, Extensin_2, Extensin-like region 29 3.1
gnl|CDD|19919 KOG2133, KOG2133, Transcriptional corepressor... 29 3.2
gnl|CDD|21532 KOG3753, KOG3753, Circadian clock protein per... 29 3.4
gnl|CDD|21457 KOG3678, KOG3678, SARM protein (with sterile ... 29 3.4
gnl|CDD|20286 KOG2500, KOG2500, Uncharacterized conserved p... 29 3.4
gnl|CDD|16512 pfam05217, STOP, STOP protein. Neurons contai... 29 3.6
gnl|CDD|22621 KOG4849, KOG4849, mRNA cleavage factor I subu... 29 3.6
gnl|CDD|18063 KOG0267, KOG0267, Microtubule severing protei... 29 3.6
gnl|CDD|18809 KOG1016, KOG1016, Predicted DNA helicase, DEA... 29 3.6
gnl|CDD|12606 COG3270, COG3270, Uncharacterized conserved p... 29 3.7
gnl|CDD|26497 pfam06346, Drf_FH1, Formin Homology Region 1.... 29 3.8
gnl|CDD|22124 KOG4348, KOG4348, Adaptor protein CMS/SETA [S... 29 3.8
>gnl|CDD|7560 pfam00308, Bac_DnaA, Bacterial dnaA protein
Length = 314
Score = 492 bits (1269), Expect = e-140
Identities = 195/314 (62%), Positives = 243/314 (77%), Gaps = 1/314 (0%)
Query: 179 LNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLK 238
Sbjct: 1 LNKRYTFENFVIGSSNRFAHAAALAVAEAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALR 60
Query: 239 KNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFF 298
Sbjct: 61 NFPNLRVVYLTSEEFLNDFVDALRDNKIEKFKKSYRNVDLLLIDDIQFLAGKEKTQEEFF 120
Query: 299 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAE 358
Sbjct: 121 HTFNALHENNKQIVITSDRPPKELEGFEDRLRSRFEWGLITDIEPPDLETRLAILRKKAE 180
Query: 359 QAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKDLLA-LQ 417
Sbjct: 181 EENINIPNEVLNFIAQRITDNVRELEGALIRLLAFASLNNKEIDIELVEEILKDIIADSK 240
Query: 418 DKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGVAFG 477
Sbjct: 241 EKEITIENIQKVVAEYYNITVEDLLSKSRTRSVVRARQIAMYLAKELTNRSLPEIGREFG 300
Query: 478 GRDHTTVLHACRKI 491
Sbjct: 301 GRDHTTVLHAVRKI 314
>gnl|CDD|10463 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair]
Length = 408
Score = 459 bits (1183), Expect = e-130
Identities = 206/338 (60%), Positives = 256/338 (75%), Gaps = 3/338 (0%)
Query: 173 LKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAV 232
Sbjct: 74 LPLPSGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAI 133
Query: 233 GNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKER 292
Sbjct: 134 GNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKER 192
Query: 293 SQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAI 352
Sbjct: 193 TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252
Query: 353 LMKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKD 412
Sbjct: 253 LRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKD 312
Query: 413 LLALQDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEI 472
Sbjct: 313 LLRAGEK-ITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPEI 371
Query: 473 GVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLR 510
Sbjct: 372 GKAF-GRDHTTVLHAVRKIEQLIEEDDSLKEEIELLKR 408
Score = 57.6 bits (139), Expect = 7e-09
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 6 WQQCVDLLRDELPSQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGE 65
Sbjct: 1 WERVLARLKKELGETEFESWIRPLKVEES--VLVLYAPNEFVRNWLNSK-LDLIKELLQE 57
Query: 66 R 66
Sbjct: 58 L 58
>gnl|CDD|11198 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair]
Length = 254
Score = 64.6 bits (157), Expect = 6e-11
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 181 RTFTFENF-VEGKSNQLARAAAWQVADNLKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKK 239
Sbjct: 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGEN-LVLLGPPGVGKTHLAIAIGNELLKA 132
Query: 240 NPNAKVVYLHSERFVADMVKALQLNAINE-FKRFYRSVDALLIDDIQFFARKERSQEEFF 298
Sbjct: 133 GI--SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLF 190
Query: 299 HTFNALLEGGQQVILT 314
Sbjct: 191 QLISRRYESRSLIITS 206
>gnl|CDD|8906 cd00009, AAA, AAA-superfamily of ATPases associated with a wide
variety of cellular activities, including membrane
fusion, proteolysis, and DNA replication
Length = 129
Score = 58.1 bits (139), Expect = 5e-09
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Query: 214 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQ--------LNA 265
Sbjct: 1 IVLIVGPPGSGKTTLARAIARELLPTGLGKRVIYVNQESLLFNGGSSLSGGQKQRLLLAR 60
Query: 266 INEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLE--GGQQVILTSDRYPKEIE 323
Sbjct: 61 ALEAAGEEGKPDVLILDEITSLLDSE-TREELLEALLELLEEEGVTVILITHDLSLLELR 119
Query: 324 GLEERL 329
Sbjct: 120 DRLDRR 125
>gnl|CDD|21450 KOG3671, KOG3671, Actin regulatory protein (Wiskott-Aldrich syndrome
protein) [Signal transduction mechanisms, Cytoskeleton]
Length = 569
Score = 42.8 bits (100), Expect = 2e-04
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 82 RSRTPRAAIVPSQTHVAPPP-------PVAPPPAPVQPVSAAPVVVPREELPPVTTAPSV 134
Sbjct: 381 RSRAVSPPAPPGRPAPPPPPLGNPSAVPVPPPPPPPSLPGSAPPSAPPPPPPPPPMPSTG 440
Query: 135 SSDPYEPEEPSIDPLAAAMPAGAAPAVR 162
Sbjct: 441 AGPPPPPSAPIAPPQGAGAAAPPAPPAR 468
Score = 38.5 bits (89), Expect = 0.004
Identities = 25/88 (28%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 86 PRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPS 145
Sbjct: 414 PPPSLPGSAPPSAPPPPPPPPPMPSTGAGPPPP-------PSAPIAPPQGAGAAAPPAPP 466
Query: 146 IDP--LAAAMPAGAAPAVRTERNVQVEG 171
Sbjct: 467 ARPALLDAIAPGGQLKKVETTALSSGDG 494
Score = 37.0 bits (85), Expect = 0.012
Identities = 23/79 (29%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 92 PSQTHVAPPPP----------VAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEP 141
Sbjct: 404 PSAVPVPPPPPPPSLPGSAPPSAPPPPPPPPPMPSTGAGP----PPPPSAPIAPPQGAGA 459
Query: 142 EEPSIDPLAAAMPAGAAPA 160
Sbjct: 460 AAPPAPPARPALLDAIAPG 478
Score = 33.5 bits (76), Expect = 0.11
Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 82 RSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEP 141
Sbjct: 356 QGRSAPAPPPPRRVPSAARPP-PPPPRSRAVSPPAPPGRPAPPPPPLGNPSAVPVPPPPP 414
Query: 142 EEPSIDPLAAAMPAGAAP 159
Sbjct: 415 PPSLPGSAPPSAPPPPPP 432
Score = 33.2 bits (75), Expect = 0.17
Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query: 83 SRTPRAAIVP-----SQTHVAPPPPV--APPPAPVQPVSAAPVVVPREELPPVTTAPSV- 134
Sbjct: 367 RRVPSAARPPPPPPRSRAVSPPAPPGRPAPPPPPLGNPSAVPV-------PPPPPPPSLP 419
Query: 135 -SSDPYEPEEPSIDPLAAAMPAGAAP 159
Sbjct: 420 GSAPPSAPPPPPPPPPMPSTGAGPPP 445
Score = 32.8 bits (74), Expect = 0.22
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 98 APPPPVA------PPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAA 151
Sbjct: 362 APPPPRRVPSAARPPPPPPRSRAVSPPAPPGRPAPPPPPLGNPSAVPVPPPPPPPSLPGS 421
Query: 152 AMPAGAAPA 160
Sbjct: 422 APPSAPPPP 430
Score = 31.6 bits (71), Expect = 0.45
Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 6/102 (5%)
Query: 65 ERGEGQLPALSLLIGSKRSRTPRAAI--VPSQTHVAPPPP---VAPPPAPVQPVSAAPVV 119
Sbjct: 297 QKNPNGLPSVGQSAAELPRQKKRPPPPPPPSRRNPGGNQPPNRSLPPPPPAGGPIPLPAQ 356
Query: 120 VPREELPPV-TTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPA 160
Sbjct: 357 GRSAPAPPPPRRVPSAARPPPPPPRSRAVSPPAPPGRPAPPP 398
>gnl|CDD|27281 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins (FAP).
Family members are rich in alanine and proline, are
approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix
Length = 296
Score = 40.6 bits (94), Expect = 0.001
Identities = 29/108 (26%), Positives = 37/108 (34%), Gaps = 13/108 (12%)
Query: 60 LELLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAP-----------PPA 108
Sbjct: 4 VDATSTRRKGLWATLAIATVASASAVTIALPATANADPEPPPPVPPSTATTPSTAAAAPA 63
Query: 109 PVQPVSAAP--VVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMP 154
Sbjct: 64 PAPPTRAPPPAAAPPNGAQPGDPNAPPPPVDPNAPPPPPADPNAGRIP 111
>gnl|CDD|18039 KOG0243, KOG0243, Kinesin-like protein [Cytoskeleton]
Length = 1041
Score = 40.0 bits (93), Expect = 0.002
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 17/134 (12%)
Query: 113 VSAAPVVVPRE------ELPPVTTAPSVSSDPYEPEEP-----SIDPLAAAMPAGAAPAV 161
Sbjct: 13 VQESPCRTPRETQRSNRDSSGPSNSNTSSKDHKEKEVNIQVIVRCRPRNDRERKSKSSVV 72
Query: 162 RTERNVQVEGALKHT---SYLNRTFTFENFVEGKSNQ--LARAAAWQVADNLKHGYN-PL 215
Sbjct: 73 VSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTI 132
Query: 216 FLYGGVGLGKTHLM 229
Sbjct: 133 FAYGQTGTGKTYTM 146
>gnl|CDD|11188 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones]
Length = 366
Score = 40.0 bits (93), Expect = 0.002
Identities = 50/277 (18%), Positives = 107/277 (38%), Gaps = 37/277 (13%)
Query: 215 LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERF---------VADMVKAL---Q 262
Sbjct: 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTG 104
Query: 263 LNAINEFKRFYRSVDA------LLIDDIQFFARKERSQEEFFHTFNALLEGGQQV-ILTS 315
Sbjct: 105 DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDK--DGEVLYSLLRAPGENKVKVSIIAV 162
Query: 316 DRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIE-------LPHDA 368
Sbjct: 163 SNDDKFLDYLDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIA 221
Query: 369 AFFIAQRIRSNVRELEGALKRVIAHSHFMGRP-ITIELIRESLKDLLALQDKLVSIDNIQ 427
Sbjct: 222 AL--VAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI----ERDVLEEVL- 274
Query: 428 RTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKEL 464
Sbjct: 275 KTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERL 311
>gnl|CDD|11199 COG1485, COG1485, Predicted ATPase [General function prediction only]
Length = 367
Score = 39.5 bits (92), Expect = 0.002
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 34/125 (27%)
Query: 215 LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKAL-----QLNAINEF 269
Sbjct: 68 LYLWGGVGRGKTMLM----DLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPI 123
Query: 270 -KRFYRSVDALLIDDIQFFARKERSQEEFFHT-----------FNALLEGGQQVILTSDR 317
Sbjct: 124 ADELAAETRVLCFD-------------EFEVTDIADAMILGRLLEALFARGVVLVATSNT 170
Query: 318 YPKEI 322
Sbjct: 171 APDNL 175
>gnl|CDD|22083 KOG4307, KOG4307, RNA binding protein RBM12/SWAN [General function
prediction only]
Length = 944
Score = 37.8 bits (87), Expect = 0.006
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 98 APPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAA-----A 152
Sbjct: 190 QQPPPLPAVGLGPQ-INRYGSGPPIPKPADLSTTRSLPPVNNPPPPHSVPQFTPLKQFSG 248
Query: 153 MPAGAAPAV 161
Sbjct: 249 NKLGNNPDV 257
Score = 29.3 bits (65), Expect = 2.5
Identities = 6/53 (11%), Positives = 9/53 (16%)
Query: 94 QTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSI 146
Sbjct: 212 PIPKPADLSTTRSLPPVNNPPPPHSVPQFTPLKQFSGNKLGNNPDVSSRENHI 264
>gnl|CDD|18822 KOG1029, KOG1029, Endocytic adaptor protein intersectin [Signal
transduction mechanisms, Intracellular trafficking,
secretion, and vesicular transport]
Length = 1118
Score = 37.4 bits (86), Expect = 0.008
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Query: 99 PPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPS-VSSDPYEPEEPSIDPLAAAMPAGA 157
Sbjct: 120 PLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHDSSVSEGRPSIE 179
Query: 158 APAVRTERNVQVEGALKHTSYLN 180
Sbjct: 180 SVNQLEEWAVPQHNKLKYRQLFN 202
>gnl|CDD|19489 KOG1701, KOG1701, Focal adhesion adaptor protein Paxillin and related
LIM proteins [Signal transduction mechanisms]
Length = 468
Score = 37.0 bits (85), Expect = 0.012
Identities = 18/67 (26%), Positives = 22/67 (32%)
Query: 67 GEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELP 126
Sbjct: 204 GLGSPPPPSLTYAQQMGASLIADLPQLHLKPGPPPPQAPGEGPSGQPGPLPLWPVEAELE 263
Query: 127 PVTTAPS 133
Sbjct: 264 PTEAEPV 270
>gnl|CDD|5035 pfam03276, Gag_spuma, Spumavirus gag protein
Length = 591
Score = 37.0 bits (85), Expect = 0.013
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 68 EGQLPALS-LLIGSKRSRTPRAAI----VPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPR 122
Sbjct: 167 RGQLQGLRGNLPGAPAPRPPPSSIPQPSAPSSQAPAPSPSSAPADLPWSPGPSDP----- 221
Query: 123 EELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPA 160
Sbjct: 222 -RLSRVAYNPFIESDGSGPRQPSAPPRREPLPAPAPGA 258
>gnl|CDD|2228 pfam01695, IstB, IstB-like ATP binding protein. This protein contains
an ATP/GTP binding P-loop motif. It is found associated
with IS21 family insertion sequences. The function of
this protein is unknown, but it may perform a transposase
function
Length = 178
Score = 36.3 bits (84), Expect = 0.016
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 215 LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYR 274
Sbjct: 50 LLLLGPPGVGKTHLACALGHQACRA--GYSVLFTRTPDLVEQLKRARGDGRLARTLQRLA 107
Query: 275 SVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKE 321
Sbjct: 108 KADLLILDDIGYLPLSQEAAHLLFELISDRYERR-STILTSNLPFGE 153
>gnl|CDD|17929 KOG0132, KOG0132, RNA polymerase II C-terminal domain-binding protein
RA4, contains RPR and RRM domains [RNA processing and
modification, Transcription]
Length = 894
Score = 36.6 bits (84), Expect = 0.017
Identities = 26/89 (29%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 78 IGSKRSRTPRAAIVPSQTHVAPPP-----PVAPPPAPVQPVSAA--PVVVPREELPPVTT 130
Sbjct: 557 TSSKAQPIPPPNIVPGPPDPAPPPVGRPRPQKPPPRPGAPIPSGEPPAFPGPMWHPPPGF 616
Query: 131 APSVSSDPYEPEEPSIDPLAAAMPAGAAP 159
Sbjct: 617 VPNPPPPPLRPGYNPYPPPPGFMPPTSPP 645
Score = 30.4 bits (68), Expect = 1.0
Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 86 PRAAIVPSQ----THVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPS---VSSDP 138
Sbjct: 596 PIPSGEPPAFPGPMWHPPPGFVPNPPPPPLRPGYNPYPPPPGFMPPTSPPPGQPPMGIPP 655
Query: 139 YEPEEPSIDPLAAAMPAG 156
Sbjct: 656 QTPPPPMFPQGFNAPPLG 673
>gnl|CDD|18361 KOG0566, KOG0566, Inositol-1,4,5-triphosphate 5-phosphatase
(synaptojanin), INP51/INP52/INP53 family [Intracellular
trafficking, secretion, and vesicular transport]
Length = 1080
Score = 36.1 bits (83), Expect = 0.021
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 83 SRTPRAAIVPSQT----HVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDP 138
Sbjct: 969 LSSSTDAIPPSKPLIPRPIRPPSARSPSPSAKSPSPTEAPNSSSTSMPSPASAATLSGPW 1028
Query: 139 YEPEEPSIDPLAAAMPAGAAPA 160
Sbjct: 1029 YVISKPLAPPQSNNGLNQQAPA 1050
Score = 34.2 bits (78), Expect = 0.083
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 71 LPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTT 130
Sbjct: 1019 ASAATLSGPWYVISKPLAPPQSNNGLNQQAPAPLPPPAPPPPPVGAP-LGPGPPLPNVPL 1077
Query: 131 AP 132
Sbjct: 1078 PP 1079
>gnl|CDD|3487 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid protein
may act as a link between the external capsid and the
internal DNA-protein core. The C-terminal 11 residues may
function as a protease cofactor leading to enzyme
activation
Length = 238
Score = 35.8 bits (82), Expect = 0.026
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 6/125 (4%)
Query: 53 EKYLGRLLE-LLGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHV--APPPPVAPPPAP 109
Sbjct: 99 EKDLEKLLEKVLGE--EEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIK 156
Query: 110 VQP-VSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQ 168
Sbjct: 157 PGPAPVEEPVDSMAIAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRSRIKRTRSSG 216
Query: 169 VEGAL 173
Sbjct: 217 WQATL 221
>gnl|CDD|22238 KOG4462, KOG4462, WASP-interacting protein VRP1/WIP, contains WH2
domain [Cytoskeleton]
Length = 437
Score = 35.6 bits (81), Expect = 0.028
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 72 PALSLLIGSKRSRTPRAAIVPSQTHVAPP--PPVAPPPAPVQPVSAAPVVVPREELPPVT 129
Sbjct: 256 PAPDVPTAPRRSGNSESPDLPQRTNSLSLSTPPLAPPPPT----SAAPPLPPKVPPPPVR 311
Query: 130 TAPSVSSDPYEPEEPSIDPLAAAMPAGAAPA 160
Sbjct: 312 DPPSRAAPAPPPP-----PVSRTGSARDAPA 337
Score = 35.2 bits (80), Expect = 0.036
Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 67 GEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVP----- 121
Sbjct: 268 GNSESPDLPQRTNSLSLSTPPLAPPPPTSAAPPLPPKVPPPPVRDPPSRAAPAPPPPPVS 327
Query: 122 -----REELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAP 159
Sbjct: 328 RTGSARDAPAPPPPAPNVTSES--PKSGNRPPPPPSRSPAPAP 368
Score = 34.8 bits (79), Expect = 0.054
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 80 SKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSS-DP 138
Sbjct: 141 FSRSMPPEPHIGPSSADAAPPSVPSSPSTPHSGASPPTPPPPRPSIPPPTPASAPSSKKS 200
Query: 139 YEPEEPSIDPLAAA 152
Sbjct: 201 ANLPSVPLPPTPSA 214
Score = 34.1 bits (77), Expect = 0.082
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 14/95 (14%)
Query: 85 TPRAAIVPSQTHVAPPPPVAPPPAPVQPV------SAAPVVVPREELPPVTTAPSVSSDP 138
Sbjct: 211 TPSASLPTHVKAPPPPPAQQKPPIPLDSRNISSDREQFSPPPPARPAPDVPTAPRRSGNS 270
Query: 139 YEPEEP--------SIDPLAAAMPAGAAPAVRTER 165
Sbjct: 271 ESPDLPQRTNSLSLSTPPLAPPPPTSAAPPLPPKV 305
Score = 29.4 bits (65), Expect = 2.4
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 90 IVPSQTHVAPPPP-VAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDP 148
Sbjct: 241 ISSDREQFSPPPPARPAPDVPTAPRRSGNSESPD--LPQRTNSLSLSTPPLAP--PPPTS 296
Query: 149 LAAAMPAGAAP 159
Sbjct: 297 AAPPLPPKVPP 307
Score = 29.1 bits (64), Expect = 2.5
Identities = 22/90 (24%), Positives = 24/90 (26%), Gaps = 8/90 (8%)
Query: 85 TPRAAIVPSQTHVAPPPPVAP-------PPAPVQPVSAAPVVVPREELPPVTTAPSVSSD 137
Sbjct: 307 PPPVRDPPSRAAPAPPPPPVSRTGSARDAPAPPPPAPNVTSESPKSGNRP-PPPPSRSPA 365
Query: 138 PYEPEEPSIDPLAAAMPAGAAPAVRTERNV 167
Sbjct: 366 PAPPPPPPSASYRPGQRPTRTSADDDESRF 395
Score = 28.3 bits (62), Expect = 5.1
Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 97 VAPPPPVAPPPAPVQ-PVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPA 155
Sbjct: 179 PPPPRPSIPPPTPASAPSSKKSANLPSVPLPPT---PSASLPT-HVKAPPPPPAQQKPPI 234
Query: 156 GAAP 159
Sbjct: 235 PLDS 238
>gnl|CDD|18354 KOG0559, KOG0559, Dihydrolipoamide succinyltransferase
(2-oxoglutarate dehydrogenase, E2 subunit) [Energy
production and conversion]
Length = 457
Score = 35.4 bits (81), Expect = 0.033
Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 11/123 (8%)
Query: 51 VNEKYLGRLLELLGERGEGQLPALSLLIGSKRSRTPRAAIV-PSQTHVAPPPPVAPPPAP 109
Sbjct: 118 VPSPASGVITELLVKDGDTVTPGQKLAKISPGAAPAKGGASAPAKAEPKTAPAAAAPPKP 177
Query: 110 VQ---PVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERN 166
Sbjct: 178 SSKPPPKEAAPVAESPPA-PSSPEPVPASAKKPSVAQPKPPPSEGATPS------RSERR 230
Query: 167 VQV 169
Sbjct: 231 VKM 233
>gnl|CDD|14817 cd00106, KISc, Kinesin motor, catalytic domain. ATPase.;
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division
Length = 327
Score = 35.5 bits (82), Expect = 0.033
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 163 TERNVQVEGALKHTSYLNRTFTFENFVEGKSNQ--LARAAAWQVADNLKHGYN-PLFLYG 219
Sbjct: 29 SNKTVTLTPPQSLRSGEPKTFTFDKVFDPEASQEDVYEETVKPLVESVLDGYNGTIFAYG 88
Query: 220 GVGLGKTHLM 229
Sbjct: 89 QTGSGKTYTM 98
>gnl|CDD|14902 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division
Length = 340
Score = 35.2 bits (81), Expect = 0.040
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 164 ERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLA--RAAAWQVADNLKHGYN-PLFLYGG 220
Sbjct: 32 SKTVRVRQPPKSD-QKSKTFTFDHVFGPSATQEDVFEEVAAPLVDSVLEGYNGTIFAYGQ 90
Query: 221 VGLGKTHLM 229
Sbjct: 91 TGSGKTYTM 99
>gnl|CDD|25451 pfam00225, Kinesin, Kinesin motor domain
Length = 329
Score = 34.8 bits (80), Expect = 0.045
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 180 NRTFTFENFVEGKSNQLA--RAAAWQVADNLKHGYN-PLFLYGGVGLGKTHLM 229
Sbjct: 41 KKTFTFDKVFDPEATQEFVYEEVAKPLVESVLEGYNGTIFAYGQTGSGKTYTM 93
>gnl|CDD|26166 pfam03969, AFG1_ATPase, AFG1-like ATPase. This family of proteins
contains a P-loop motif and are predicted to be ATPases
Length = 360
Score = 34.1 bits (78), Expect = 0.078
Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 12/114 (10%)
Query: 215 LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEF----- 269
Sbjct: 63 LYLWGGVGRGKTHLMDSFFESL----PGQRKRRVHFHAFMARVHDELTTLQGGDDPLPIV 118
Query: 270 -KRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEI 322
Sbjct: 119 ADRFANEARVLCFD--EFEVSDIGDAMILGRLLEALFARGVSLVATSNTAPEQL 170
>gnl|CDD|7823 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses
Length = 330
Score = 34.1 bits (78), Expect = 0.089
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 215 LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVY 247
Sbjct: 119 VYLHGAPGQGKSLLANVLARALLKHEGGEDSVY 151
>gnl|CDD|19699 KOG1913, KOG1913, Regucalcin gene promoter region-related protein
(RGPR) [Transcription]
Length = 1423
Score = 33.9 bits (77), Expect = 0.095
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 85 TPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPE 142
Sbjct: 1134 ATSAALPPPPTQPAFRPTISYPPKGNSMGPPDGVYSEGPPHLPGTKSPVVPSEAHGEQ 1191
>gnl|CDD|23743 pfam05518, Totivirus_coat, Totivirus coat protein
Length = 753
Score = 33.4 bits (76), Expect = 0.14
Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 79 GSKRSRTPR-AAIVPSQTHVAPPPPVA--PPPAPVQPVSAAPVVVPREELPPVTTAPSVS 135
Sbjct: 671 TARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPP---PPDLGAAAGPAPCGS 727
Query: 136 SDPYEPEEPSIDPLAAAMPAGAAPAV 161
Sbjct: 728 SLIASPTAPPEPEPPGAEQADGAENQ 753
Score = 28.8 bits (64), Expect = 3.6
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 99 PPPPVAPPPAP-VQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGA 157
Sbjct: 636 PPVFKTALPAPDYNRGGEAG--GPGVPGPVPVGMPAHTARP--SRVARGDPVRPTAHHAA 691
Query: 158 APAVRTERNVQVEG 171
Sbjct: 692 LRAPQAPRPGGPPG 705
>gnl|CDD|19731 KOG1945, KOG1945, Protein phosphatase 1 binding protein
spinophilin/neurabin II [Signal transduction mechanisms]
Length = 377
Score = 33.5 bits (76), Expect = 0.14
Identities = 26/125 (20%), Positives = 37/125 (29%), Gaps = 9/125 (7%)
Query: 98 APPPPVAP------PPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDP-LA 150
Sbjct: 43 QPPPPLPPKPPSQCPPSPMSQVFSAFSVEDY-DRKNEDTDPVASCAEYELERRLERMDLF 101
Query: 151 AAMPAGAAPAVRTERNVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKH 210
Sbjct: 102 EVAVEKGAEGLGVSIIGMGVGK-KSGLEELGIFVKSATSGGAVHRDGRWSVEDVEVSVDS 160
Query: 211 GYNPL 215
Sbjct: 161 KSLPG 165
>gnl|CDD|26716 pfam06604, OMP_19, Bacterial outer membrane lipoprotein omp19. This
family consists of several bacterial outer membrane
lipoprotein omp19 sequences
Length = 181
Score = 33.1 bits (75), Expect = 0.15
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 87 RAAIVPSQTHVAPPPPVAPPPA--PVQPVSAAPVVVPREELPPVTTAPSVS 135
Sbjct: 42 QAQPAGSVQSGQLPPPAGADPSQFPTAPATAAPGGTQVASLPPPAGALDLT 92
Score = 29.3 bits (65), Expect = 2.1
Identities = 25/112 (22%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 103 VAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEP--EEPSIDPLAAAMPAGAAPA 160
Sbjct: 34 PPQQPAPLQAQPAGS--VQSGQLPPPAGA-DPSQFPTAPATAAPGGTQVASLPPPAGALD 90
Query: 161 VRTERNVQVEGALKHTSYLNRTFTFENFVEGK-------SNQLARAAAWQVA 205
Sbjct: 91 LTKEAVAGVWNASVGGQSCKIATPQTKLGSGSRAGPLGCPGELTAMGSWEVA 142
>gnl|CDD|19771 KOG1985, KOG1985, Vesicle coat complex COPII, subunit SEC24/subunit
SFB2 [Intracellular trafficking, secretion, and vesicular
transport]
Length = 887
Score = 33.4 bits (76), Expect = 0.15
Identities = 14/74 (18%), Positives = 17/74 (22%), Gaps = 1/74 (1%)
Query: 86 PRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPS 145
Sbjct: 7 PSAQNPPPQTGPVQPALFPPASLTPQNGMPPPPSASMPPPAGSVPPASVTPA-QPQIQQQ 65
Query: 146 IDPLAAAMPAGAAP 159
Sbjct: 66 IPPATPSMEGNLQL 79
Score = 27.6 bits (61), Expect = 7.3
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 85 TPRAAIVPSQTHVAPP-PPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEE 143
Sbjct: 50 VPPASVTPAQPQIQQQIPPATPSMEGNLQLPNAPVGPP--SYQQLQAPTPAQQQQQPPPP 107
Query: 144 PSIDPLAAAMPAGAAP 159
Sbjct: 108 PQVGSQPPQMGPPAPP 123
>gnl|CDD|19770 KOG1984, KOG1984, Vesicle coat complex COPII, subunit SFB3
[Intracellular trafficking, secretion, and vesicular
transport]
Length = 1007
Score = 33.0 bits (75), Expect = 0.16
Identities = 27/97 (27%), Positives = 32/97 (32%), Gaps = 20/97 (20%)
Query: 94 QTHVAPPPPVAPPPAPVQPVSAAPVVVPREELP--------PVTTAPSVSSDPYEPEEPS 145
Sbjct: 44 GTGPRGPPPGAPPQQP-QSG-QSPMARPPQRRPGPPPGVSQPNGFAASPSSQPSYPGRPS 101
Query: 146 I----------DPLAAAMPAGAAPAVRTERNVQVEGA 172
Sbjct: 102 TPGGPQAGGSQSSFAAAGPSSGSGTGPPSGNSQGPAG 138
Score = 30.7 bits (69), Expect = 0.92
Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 67 GEGQLPALSLLIGSKRSRTPRAAIVPSQTHVA--PPPPVAPPPAPVQPVSAAPVVVPREE 124
Sbjct: 131 GNSQGPAGPLSQGPPTGGFPQPSAFPPGPQGGGPPGPAMVPPSGPLMVSQPARASGMPPA 190
Query: 125 LPPVTTAPSVSSDPYEPEEPSIDPLAAA 152
Sbjct: 191 FPPGAQMQPPPPGAPRPSGPGYFPQSFS 218
Score = 28.0 bits (62), Expect = 5.5
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 8/89 (8%)
Query: 69 GQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPP-APVQPVSAAPVVVPREELPP 127
Sbjct: 148 GFPQPSAFPPGPQGGGPPGPAMVPPSG----PLMVSQPARASGMPPAFPP---GAQMQPP 200
Query: 128 VTTAPSVSSDPYEPEEPSIDPLAAAMPAG 156
Sbjct: 201 PPGAPRPSGPGYFPQSFSSGAPAPGGPGS 229
>gnl|CDD|21616 KOG3837, KOG3837, Uncharacterized conserved protein, contains DM14
and C2 domains [General function prediction only]
Length = 523
Score = 33.1 bits (75), Expect = 0.16
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 99 PPPP--VAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLA 150
Sbjct: 156 PPPPDTMGPEPPQVAPSAAAE---LPSQPPAQPTAPTTPSSPPPPRASTSGQLA 206
Score = 27.3 bits (60), Expect = 9.5
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 99 PPPPVAPP---PAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPL 149
Sbjct: 48 PPPPGLKPGDSDAPVRPDSPPPNV---ERAQPDPKAPDTPAFPEQFVAPTRSHP 98
>gnl|CDD|21868 KOG4090, KOG4090, Uncharacterized conserved protein [Function
unknown]
Length = 157
Score = 32.7 bits (74), Expect = 0.19
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 82 RSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAP 117
Sbjct: 18 AARAPSPAAAPRPRTRAPPPAASAAPSAGGSPAFAP 53
Score = 32.7 bits (74), Expect = 0.22
Identities = 17/56 (30%), Positives = 18/56 (32%)
Query: 71 LPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELP 126
Sbjct: 1 MPRGSRSARSSPRSRPAAARAPSPAAAPRPRTRAPPPAASAAPSAGGSPAFAPRQP 56
Score = 31.6 bits (71), Expect = 0.45
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 98 APPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDP-YEPEEPSIDPLAAAMPAG 156
Sbjct: 9 RSSPRSRPAAARAPSPAAAPRPRTRAPPPAASAAPSAGGSPAFAPRQPGLMAQMATTAAG 68
Query: 157 AA 158
Sbjct: 69 VA 70
Score = 27.7 bits (61), Expect = 6.3
Identities = 24/112 (21%), Positives = 33/112 (29%), Gaps = 19/112 (16%)
Query: 63 LGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPP------APVQP---- 112
Sbjct: 1 MPRGSRSARSSPRSRPAAARAPSPAAAPRPRTRAPPPAASAAPSAGGSPAFAPRQPGLMA 60
Query: 113 ---VSAAPVVVPR---EELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAA 158
Sbjct: 61 QMATTAAGVAVGSAVGHTMGPAITGGFSGGSSHEAAVPDI---TYQAPAGST 109
>gnl|CDD|14462 COG5373, COG5373, Predicted membrane protein [Function unknown]
Length = 931
Score = 33.0 bits (75), Expect = 0.20
Identities = 19/67 (28%), Positives = 23/67 (34%)
Query: 86 PRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPS 145
Sbjct: 66 PAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEPSLAANPFAAA 125
Query: 146 IDPLAAA 152
Sbjct: 126 IEWLLGG 132
Score = 30.7 bits (69), Expect = 0.82
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 92 PSQTHVAPPP--PVAPPPAPVQPVSA-APVVVPREELPPVTTAPSVSSDPYEPEEPSIDP 148
Sbjct: 42 GAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVP 101
Query: 149 LAAAMPAGAAPAV 161
Sbjct: 102 APSAAPAPAEPVE 114
Score = 29.2 bits (65), Expect = 2.6
Identities = 15/72 (20%), Positives = 19/72 (26%), Gaps = 5/72 (6%)
Query: 98 APPPPVAPPPAPVQPVSAAPVVVP-----REELPPVTTAPSVSSDPYEPEEPSIDPLAAA 152
Sbjct: 56 APEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAAPAPAEPVEP 115
Query: 153 MPAGAAPAVRTE 164
Sbjct: 116 SLAANPFAAAIE 127
>gnl|CDD|18698 KOG0905, KOG0905, Phosphoinositide 3-kinase [Signal transduction
mechanisms]
Length = 1639
Score = 32.7 bits (74), Expect = 0.23
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 69 GQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPV 128
Sbjct: 119 ASLSGPSLYPAPGSPGGPEYSKQPAAQSVSLLPDMYFVPPPLPPYTSVPGVPPQH--SRR 176
Query: 129 TTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEG----ALKHTSY 178
Sbjct: 177 PQSPPSPIHHSQPSDSSTFSHVAPFPAKSQDKISSEKEFENNGHSRTDLDTSDY 230
Score = 27.7 bits (61), Expect = 7.2
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 78 IGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPV-----QPVSAAPVVVPREELPPVTTAP 132
Sbjct: 86 LDFDPSYNEPRGPIPIPSSSIYPQNYFQPQWPKASLSGPSLYPAPGSPGGPEYSKQPAAQ 145
Query: 133 SVSSDPYEPEEPSIDPLAAAMP 154
Sbjct: 146 SVSLLPDMYFVPPPLPPYTSVP 167
>gnl|CDD|10337 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones]
Length = 494
Score = 32.5 bits (73), Expect = 0.26
Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 22/165 (13%)
Query: 215 LFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYR 274
Sbjct: 279 VLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELLSKWVGESEKNIRELFEKARK 333
Query: 275 SVDA-LLIDDIQFFARKERSQEEFFHTFNALLEGGQQ-----------VILTSDRYPKEI 322
Sbjct: 334 LAPSIIFIDEIDSLASG-RGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR-PDDL 391
Query: 323 EGLEERLKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIELPHD 367
Sbjct: 392 DP-ALLRPGRFDR--LIYVPLPDLEERLEIFKIHLRDKKPPLAED 433
>gnl|CDD|22115 KOG4339, KOG4339, RPEL repeat-containing protein [General function
prediction only]
Length = 533
Score = 32.3 bits (73), Expect = 0.27
Identities = 13/70 (18%), Positives = 19/70 (27%)
Query: 79 GSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDP 138
Sbjct: 137 HSENSEPSPPISDPTLSSIVRTKSQDPSPDPEKASSEIGGQRVDFISSTSTANPLIFHLP 196
Query: 139 YEPEEPSIDP 148
Sbjct: 197 PPPPSLSPPP 206
>gnl|CDD|19616 KOG1830, KOG1830, Wiskott Aldrich syndrome proteins [Cytoskeleton]
Length = 518
Score = 32.3 bits (73), Expect = 0.33
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 92 PSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSV--SSDPYEPEEPSIDP 148
Sbjct: 302 PTQPPPPPPLDSPPGPDPTASIPSTP-PDPRDDLPPPPPPLLMNSPIVPPPPSPPSTIP 359
Score = 32.3 bits (73), Expect = 0.29
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 91 VPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLA 150
Sbjct: 392 LPQGAFFGSPPPPPPPPPP-----------PGPKLPPSVICPSGSLAKGAPMLPPSAPVS 440
Query: 151 AAM-PAGAAPAVRTERNV 167
Sbjct: 441 EAKRPKPVLPPISDARSD 458
Score = 28.1 bits (62), Expect = 6.1
Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 85 TPRAAI--VPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPE 142
Sbjct: 318 DPTASIPSTPPDPRDDLPPP-PPPLLMNSPIVPPPPSPPSTIPFVEPAAPPPTNPPLCNP 376
Query: 143 EPSIDPLAAAMPAGAAP 159
Sbjct: 377 FPSIAMTSFLCPPHPLP 393
>gnl|CDD|4690 pfam02161, Prog_receptor, Progesterone receptor
Length = 554
Score = 31.8 bits (71), Expect = 0.37
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 64 GERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPRE 123
Sbjct: 432 GEAAVTAEPSASVSSASSSGSSLECILYKAEG--APPLQGAFAPPPCKPPAASGCLLPRD 489
Query: 124 ELPPVTTAP 132
Sbjct: 490 SLPSTSAAA 498
Score = 29.5 bits (65), Expect = 2.3
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 83 SRTPR----AAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTA-PSVSSD 137
Sbjct: 398 ARSPRPYLGAGAAPADFPDFPLPPQPPRATPSRPGEAAVTAEPSASVSSASSSGSSLECI 457
Query: 138 PYEPEEPSIDPLAAAMPAGAAPA 160
Sbjct: 458 LYKAEGAPPLQGAFAPPPCKPPA 480
>gnl|CDD|27330 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function
Length = 332
Score = 31.7 bits (71), Expect = 0.39
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 93 SQTHVAPPPPVA--PPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPS 145
Sbjct: 93 PQQEPYPPPPTQLQPPPAPVPPYQAPQTQTPHQ--PTYQAPPQQPQYPQQPPPPS 145
Score = 28.6 bits (63), Expect = 3.5
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 92 PSQTHVAPPPPVA-------PPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEP 144
Sbjct: 132 PQQPQYPQQPPPPSGYNPEEQPPAQTQSYPPNQQWPPQPQPPPGSSPSQQTYNPPPPQPS 191
Query: 145 SIDP 148
Sbjct: 192 MYDG 195
Score = 27.5 bits (60), Expect = 8.4
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 79 GSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDP 138
Sbjct: 43 VEPTAQTPAPEPKKSENTSDAPNQQLALALPHQIAPP-----PSQLPPQLPPQFSPQQEP 97
Query: 139 YEPEEPSIDPLAAAMPAGAAPAVRT 163
Sbjct: 98 YPPPPTQLQPPPAPVPPYQAPQTQT 122
>gnl|CDD|9153 pfam00429, TLV_coat, ENV polyprotein (coat polyprotein)
Length = 583
Score = 31.9 bits (72), Expect = 0.40
Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 19/150 (12%)
Query: 85 TPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREE---LPPVTTAPS-------- 133
Sbjct: 201 DPREEIGPNLVPPDQYPPLAPPPPPRSPDDTGDRLLNLVQGTYLALNATNPSLTQDCWLC 260
Query: 134 -VSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQ-------VEGALKHTSYLNRTFTF 185
Sbjct: 261 LVSGPPYYEGIAVYGTYSSHTPANCSSTPQHKLTLSEVTGQGLCIIPVPKTHFSLCNSTQ 320
Query: 186 ENFVEGKSNQLARAAAWQVADNLKHGYNPL 215
Sbjct: 321 NVSTGSYYLCAPNGTVFACGTGLTPCYSPL 350
>gnl|CDD|17959 KOG0162, KOG0162, Myosin class I heavy chain [Cytoskeleton]
Length = 1106
Score = 31.9 bits (72), Expect = 0.41
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Query: 83 SRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPE 142
Sbjct: 948 STPTRRAPQNKQAYGQNG---VSPAAKGSPLPAQKPVNTYNQRPPPVSTSTTTSQQPSAR 1004
Query: 143 EPSIDPLAAAMPAGAAPAVRTERNVQVEG 171
Sbjct: 1005 PSSKPTVFTKVPDAGASGNGRKPSGPQRP 1033
Score = 28.0 bits (62), Expect = 5.3
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 79 GSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPV 110
Sbjct: 1022 GNGRKPSGPQRPPPPAGRPKPPPPAKPPKNPV 1053
>gnl|CDD|22056 KOG4280, KOG4280, Kinesin-like protein [Cytoskeleton]
Length = 574
Score = 31.6 bits (71), Expect = 0.45
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 180 NRTFTFENFVEGKSNQ--LARAAAWQVADNLKHGYN-PLFLYGGVGLGKTHLM 229
Sbjct: 51 PKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTM 103
>gnl|CDD|17995 KOG0199, KOG0199, ACK and related non-receptor tyrosine kinases
[Signal transduction mechanisms]
Length = 1039
Score = 31.6 bits (71), Expect = 0.45
Identities = 21/95 (22%), Positives = 26/95 (27%), Gaps = 12/95 (12%)
Query: 93 SQTHVAPPPPVAPP----PAPVQPVSAAPV-----VVPREELPPVTTAPSVSSDPYEPEE 143
Sbjct: 750 SDARNPLPPKTSPPVSNTPITVAPVHAAPTTPSTSVVTRRPTS---TTAQMSDEERRSRI 806
Query: 144 PSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSY 178
Sbjct: 807 AMDISSALQAPYGSNSTSSLPSTARDNPVETRPSQ 841
Score = 28.5 bits (63), Expect = 4.5
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 12/91 (13%)
Query: 92 PSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPL-- 149
Sbjct: 525 PPTNRAPVAIPTNPPGSVISSTASAGITLSTNGSQMFTP-----QDRHSNMPPSLFPLLM 579
Query: 150 -----AAAMPAGAAPAVRTERNVQVEGALKH 175
Sbjct: 580 HRLNQAPSQSNGVLPRPASSIGIQNNDLSML 610
Score = 27.4 bits (60), Expect = 8.3
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 80 SKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQP 112
Sbjct: 866 SPSATTSQAKPVT-----QPPRHPSPPVATVIP 893
>gnl|CDD|12124 COG2607, COG2607, Predicted ATPase (AAA+ superfamily) [General
function prediction only]
Length = 287
Score = 31.4 bits (71), Expect = 0.49
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 41/185 (22%)
Query: 210 HGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEF 269
Sbjct: 83 LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARP---- 138
Query: 270 KRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGG-----QQVIL--TSDR----- 317
Sbjct: 139 EKF-----ILFCDDLSF-----EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLP 188
Query: 318 --------YPKEI---EGLEER--LKSRFGWGLTVAVEPPELETRVAILMKKAEQAKIEL 364
Sbjct: 189 EDMKDNEGSTGEIHPSEAVEEKLSLSDRFG--LWLSFYPCDQDEYLKIVDHYAKHFGLDI 246
Query: 365 PHDAA 369
Sbjct: 247 SDEEL 251
>gnl|CDD|21998 KOG4222, KOG4222, Axon guidance receptor Dscam [Signal transduction
mechanisms]
Length = 1281
Score = 31.6 bits (71), Expect = 0.50
Identities = 21/86 (24%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 79 GSKRSRTPRAAIVPSQTHVA---PPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVS 135
Sbjct: 1118 SSTSGSTGHRKTPPNVNWADLTPPPPANPPPPSEEYNISASESQDQEMPTPVADARAYLS 1177
Query: 136 SDPYEPEEPSIDPLAAAMPAGAAPAV 161
Sbjct: 1178 QDALAEPEPERGPTPPPRGAGSSPAA 1203
>gnl|CDD|22040 KOG4264, KOG4264, Nucleo-cytoplasmic protein MLN51 [General function
prediction only]
Length = 694
Score = 31.3 bits (70), Expect = 0.54
Identities = 15/60 (25%), Positives = 19/60 (31%)
Query: 100 PPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAP 159
Sbjct: 589 PPPKRFVPGPPPPQVAQGLVVPTYFVPPPQMTRGSTHGPNQPNALPPPGGPHGGSGGQQR 648
>gnl|CDD|18036 KOG0240, KOG0240, Kinesin (SMY1 subfamily) [Cytoskeleton]
Length = 607
Score = 31.5 bits (71), Expect = 0.54
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 176 TSYLNRTFTFENFVEGKSNQLA--RAAAWQVADNLKHGYN-PLFLYGGVGLGKTHLMHAV 232
Sbjct: 44 TTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGI 103
Query: 233 GN 234
Sbjct: 104 GH 105
>gnl|CDD|19710 KOG1924, KOG1924, RhoA GTPase effector DIA/Diaphanous [Signal
transduction mechanisms, Cytoskeleton]
Length = 1102
Score = 31.5 bits (71), Expect = 0.56
Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 72 PALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTA 131
Sbjct: 531 PPLPPTGGTGPPPPPPPPPLPGGAGPPPPPP--PLPGIAGGPPPPPPPPGGGGPPPPPPP 588
Query: 132 PSVSSDPYEPEEPSIDPLAAAMPAGAAP 159
Sbjct: 589 GGFLGGPPPPPPPGMFPMAPVLPFGLKP 616
Score = 29.2 bits (65), Expect = 2.4
Identities = 14/63 (22%), Positives = 16/63 (25%), Gaps = 1/63 (1%)
Query: 98 APPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPYE-PEEPSIDPLAAAMPAG 156
Sbjct: 520 LLPIDGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGG 579
Query: 157 AAP 159
Sbjct: 580 GGP 582
>gnl|CDD|24785 pfam05743, Tsg101, Tumour susceptibility gene 101 protein (TSG101).
This family consists of the eukaryotic tumour
susceptibility gene 101 protein (TSG101). Altered
transcripts of this gene have been detected in sporadic
breast cancers and many other human malignancies.
However, the involvement of this gene in neoplastic
transformation and tumourigenesis is still elusive.
TSG101 is required for normal cell function of embryonic
and adult tissues but that this gene is not a tumour
suppressor for sporadic forms of breast cancer
Length = 392
Score = 31.2 bits (70), Expect = 0.59
Identities = 19/80 (23%), Positives = 25/80 (31%)
Query: 72 PALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTA 131
Sbjct: 145 PTGSGAPPSPPSLPPYPSAGGAGARPFPPYPNGPNVPPYPPKPKGPHGASPYPPPPPPQP 204
Query: 132 PSVSSDPYEPEEPSIDPLAA 151
Sbjct: 205 PSSAVDLMDMDNSSQSTINA 224
Score = 30.1 bits (67), Expect = 1.5
Identities = 18/91 (19%), Positives = 25/91 (27%), Gaps = 2/91 (2%)
Query: 74 LSLLIGSKRSRTPRAAIVPSQTHVAPPPPV--APPPAPVQPVSAAPVVVPREELPPVTTA 131
Sbjct: 118 MALFAEPSADNAPPLYSSRRPQPPTPYPTGSGAPPSPPSLPPYPSAGGAGARPFPPYPNG 177
Query: 132 PSVSSDPYEPEEPSIDPLAAAMPAGAAPAVR 162
Sbjct: 178 PNVPPYPPKPKGPHGASPYPPPPPPQPPSSA 208
>gnl|CDD|17916 KOG0119, KOG0119, Splicing factor 1/branch point binding protein (RRM
superfamily) [RNA processing and modification]
Length = 554
Score = 31.2 bits (70), Expect = 0.59
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 80 SKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDPY 139
Sbjct: 421 SLQSASVHSAPVPGGLAPAYPPTSYAPPPQSGQPPGIP-LPPHPPPPGMQSAQS-SSLPQ 478
Query: 140 EPEEPSIDPLAAAMPAGAAP 159
Sbjct: 479 QASTTSIPPGDRQAQAAAPP 498
Score = 29.3 bits (65), Expect = 2.4
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 97 VAPPPPVAPPPAPVQPVSAAPVVVPREELPPVTTAPSVSSDP-------YEPEEPSIDPL 149
Sbjct: 457 IPLPPHPPPPGMQSAQSSSLPQQASTTSIPPGDRQAQAAAPPGAPFHGGNYNAVPPPPGL 516
Query: 150 AAAMPAGAAP 159
Sbjct: 517 QPANPPGAPP 526
Lambda K H
0.319 0.135 0.390
Gapped
Lambda K H
0.267 0.0403 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 8,831,401
Number of Sequences: 0
Number of extensions: 876456
Number of successful extensions: 1735
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of query: 0
length of database: 5,506,404
effective HSP length: 98
effective length of query: -98
effective length of database: 3,738,582
effective search space: -366381036
effective search space used: 1555250112
T: 11
A: 40
X1: 1600 (735.3 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1887.0 bits)
S2: 59 (27.4 bits)