Score E
Sequences producing significant alignments: (bits) Value
gnl|CDD|10619 COG0751, GlyS, Glycyl-tRNA synthetase, beta s... 888 0.0
gnl|CDD|5478 pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetas... 593 e-170
gnl|CDD|11133 COG1418, COG1418, Predicted HD superfamily hy... 35 0.041
gnl|CDD|21352 KOG3569, KOG3569, RAS signaling inhibitor ST5... 33 0.38
gnl|CDD|2834 pfam02323, ELH, Egg-laying hormone precursor. ... 28 7.1
>gnl|CDD|10619 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
ribosomal structure and biogenesis]
Length = 691
Score = 888 bits (2297), Expect = 0.0
Identities = 369/690 (53%), Positives = 473/690 (68%), Gaps = 6/690 (0%)
Query: 1 MSAKDFLVELGTEELPPKALNSLGEAFLSGIEKGLKAAGLSYAAARFYAAPRRLAVLVEQ 60
Sbjct: 1 MSMKDLLLEIGTEELPAKALRSAAEQLAKKFTAGLKEAGLSFEGVEVFATPRRLALLVKG 60
Query: 61 LAVQQPDRTVNLDGPPLQAAFDASGNPTQAALGFAKKCGVDLQQI-----DKSGPKLRFS 115
Sbjct: 61 LAEAQPDREEEKKGPPVKAAFDADGKPTKAAEGFARGQGVSVEDLERRKDDKKGEEYVYR 120
Query: 116 QTI-AGQPAAGLLPGIVEASLNELPIPKRMRWAARREEFVRPTQWLVMLFGDDVVECEIL 174
Sbjct: 121 VKKEEGQPTEELLPEIVPEAIASLPFPKSMRWGSKDVRFIRPIHWIVALLGDEVIPFEIL 180
Query: 175 AQKAGRESRGHRFHNPDNVRISSPAAYLEDLRGAHVLADFAERRELIAKRVAELAAEQQG 234
Sbjct: 181 GIKSGRITRGHRFLGPGEITIDSADDYVEKLREGKVIADPEERKAIILEQIEELASKLGG 240
Query: 235 SAIVPPSLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDANGKLLP 294
Sbjct: 241 VADIDEDLLEEVTALVEYPTVLLGKFEEKFLELPEEVLITTMKEHQKYFPVFDQGGKLLP 300
Query: 295 RFITVANVESKAPENIVSGNEKVVRPRLTDAEFFFKQDKKQPLESFNERLRNVVFQAQLG 354
Sbjct: 301 HFIFVSNGEPKDPENIIEGNEKVLRARLSDAEFFFKEDLKKPLESRLPKLKTVTFHEKLG 360
Query: 355 TVFEKAQRVSGLAAYIAERIGGNAQNAARAGILSKCDLATEMVGEFPEMQGIAGYYYATH 414
Sbjct: 361 TLADKVERIKKIAAYIAPQLGADVEDADRAALLAKADLVTEMVGEFPELQGIMGEYYALH 420
Query: 415 GGEAEDVALALNEQYMPRGAGAELPSTLTGAAVAVADKLDTLVGIFGIGMLPTGSKDPYA 474
Sbjct: 421 DGEDEEVALAIEEHYLPRFAGDELPSTPVGAVVALADKLDTLVGFFGIGLIPTGSKDPYA 480
Query: 475 LRRAALGVLRILIEKQLDLDLVAAVNAAVEQYGDKVKAAGLAEQVLDFVFDRLRARYEDE 534
Sbjct: 481 LRRAALGILRIILEKNLDLDLEELLDKAVASFKSKLTNAKVLEELLDFFLGRLRTYLQDE 540
Query: 535 GVDVAVYQSVRALKPSSPLDFDQRVQAVQAFRQLPEAEALAAANKRVSNILAKSEDEVPP 594
Sbjct: 541 GYRKDIIDAVLALNPTDLLDIIARAEALQEFLDLPEAKALAAANKRVSNILAKAEKKLSG 600
Query: 595 NVDASLLVEAAEKALGSAVANAESEVAPLAAARDYRAALARLAALREPVDTFFADVMVNV 654
Sbjct: 601 TVDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPIDEFFDNVMVMA 660
Query: 655 DDAAVRANRYALLAKLRGSFLGVADISLLG 684
Sbjct: 661 EDEALRNNRLALLSKLRELFLKVADFSLLV 690
>gnl|CDD|5478 pfam02092, tRNA_synt_2f, Glycyl-tRNA synthetase beta subunit
Length = 551
Score = 593 bits (1529), Expect = e-170
Identities = 264/544 (48%), Positives = 356/544 (65%), Gaps = 5/544 (0%)
Query: 6 FLVELGTEELPPKALNSLGEAFLSGIEKGLKAAGLSYAAARFYAAPRRLAVLVEQLAVQQ 65
Sbjct: 1 FLLEIGTEELPAQFVNNAIQQLEDLLTALLNARGLAHGNVEIFGTPRRLALLVKDLAEEQ 60
Query: 66 PDRTVNLDGPPLQAAFDASGNPTQAALGFAKKCGVDLQQI-----DKSGPKLRFSQTIAG 120
Sbjct: 61 PEKEEEKKGPPASIAFDADGNPTKAAEGFAKKQGVSVEQLEILATDKGEEYLFVAKIEER 120
Query: 121 QPAAGLLPGIVEASLNELPIPKRMRWAARREEFVRPTQWLVMLFGDDVVECEILAQKAGR 180
Sbjct: 121 QPTKDLLPEELPELLASLPFPKSMRWGNSDVEFIRPIRWIVALFGDQVLPLSIGGISSGR 180
Query: 181 ESRGHRFHNPDNVRISSPAAYLEDLRGAHVLADFAERRELIAKRVAELAAEQQGSAIVPP 240
Sbjct: 181 TSRGHRFLGPAEVSIDSPQAYEETLRKAHVIVDPKERKAIILQGLEALATEVGGSAIVPE 240
Query: 241 SLLDEVTALVEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDANGKLLPRFITVA 300
Sbjct: 241 DLLDEVTNLVEYPFVLLGKFDEAFLSLPEELLTTVMKEHQRYFPTYDKDGKLLPNFIVVS 300
Query: 301 NVESKAPENIVSGNEKVVRPRLTDAEFFFKQDKKQPLESFNERLRNVVFQAQLGTVFEKA 360
Sbjct: 301 NNSPNDPQKIIEGNEKVLRARLTDAEFFYKEDLKKKLSSFLPKLESVLFHEKLGTLYDKV 360
Query: 361 QRVSGLAAYIAERIGGNAQNAARAGILSKCDLATEMVGEFPEMQGIAGYYYATHGGEAED 420
Sbjct: 361 ERIQKMASKLALQLGADEDLVKRAAQLSKADLVTEMVYEFPELQGIMGEYYALHDGESEA 420
Query: 421 VALALNEQYMPRGAGAELPSTLTGAAVAVADKLDTLVGIFGIGMLPTGSKDPYALRRAAL 480
Sbjct: 421 VAVALNEQYLPRSAGDKLPSSTTGTVLALADKLDTLVSIFGLGLIPTGSSDPFALRRQAL 480
Query: 481 GVLRILIEKQLDLDLVAAVNAAVEQYGDKVKAAGLAEQVLDFVFDRLRARYEDEGVDVAV 540
Sbjct: 481 GILKILVEKNLEIDLEDLLERLARHFPSVWSKANVLEDLVEFLLGRLRTLLQDEGIDVDV 540
Query: 541 YQSV 544
Sbjct: 541 IRAV 544
>gnl|CDD|11133 COG1418, COG1418, Predicted HD superfamily hydrolase [General
function prediction only]
Length = 222
Score = 35.4 bits (81), Expect = 0.041
Identities = 42/176 (23%), Positives = 57/176 (32%), Gaps = 20/176 (11%)
Query: 354 GTVFEKAQRVSGLAAYIAERIGGNAQNAARAGILSKCDLATEMVGEFPEMQGIAGYYYAT 413
Sbjct: 35 QHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLH--DIGKAIDHEPGGSHAEIGAEIAR 92
Query: 414 HGGEAED----------VALALNEQYMPRGAGAELPSTLTGAAVAVADKLDTLVGI---- 459
Sbjct: 93 KFLEDPVVINAIEAHHGVEEIISRHSFLVAAADALSAARPGARLQDADRLDARGAIGEAR 152
Query: 460 ---FGIGMLPTGSKDPYALRRAA-LGVLRILIEKQLDLDLVAAVNAAVEQYGDKVK 511
Sbjct: 153 VFLFEGVEKAYAIQAGRELRRIVEDKKLDHFQEKLLKLKISKKTEEAKAEYPGKIK 208
>gnl|CDD|21352 KOG3569, KOG3569, RAS signaling inhibitor ST5 [Signal transduction
mechanisms]
Length = 425
Score = 32.6 bits (74), Expect = 0.38
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 209 HVLADFA----ERREL-IAKRVAELAAEQQGSA--------------IVPPSLLDEVTAL 249
Sbjct: 189 QMLQIFASLLLERRIIFIASKLSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYVCAP 248
Query: 250 VEWPVPLVCSFEERFLEVPQEALITTMQDNQKYFCLLDANGKLLPRFITVANVESKAPEN 309
Sbjct: 249 MPYLIGVHSSLLERVRELPLEEVVMVNLDENTLESPFD-DVQALPPKV-QSALKNRLRKN 306
Query: 310 IVSGNEKVVRPRL-TDAEFF------FKQDKKQPLESFNERLRNVVFQAQLGTVFEKAQR 362
Sbjct: 307 ELATNDGVSRAFLRAFVELFGHYRSALTQSPGEPRTFQEEAFVKQVRSKSMRRFLEVFVE 366
Query: 363 VSGLAAYIAER 373
Sbjct: 367 LQLFKQFIQDR 377
>gnl|CDD|2834 pfam02323, ELH, Egg-laying hormone precursor. This family consists of
egg-laying hormone (ELH) precursor and atrial gland
peptides form little and California sea hare. The family
also includes ovulation prohormone precursor from great
pond snail. This family thus represents a conserved
gastropoda ovulation and egg production prohormone. Note
that many of the proteins present are further cleaved to
give individual peptides. Neuropeptidergic bag cells of
the marine mollusk Aplysia californica synthesise an
egg-laying hormone (ELH) precursor protein which is
cleaved to generate several bioactive peptides including
ELH, bag cell peptides (BCP) and acidic peptide (AP)
Length = 254
Score = 28.3 bits (62), Expect = 7.1
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 524 FDRLRARYEDEGVDVAVYQSVRALKPSSPLDFDQRVQAVQAFRQLPEAEALAAAN 578
Sbjct: 67 FDKSPSYYDDDDDDFVKNEKRRLRFHKRRIRFNKRPQEVSGLKPVMMSRASASAD 121
Lambda K H
0.318 0.135 0.375
Gapped
Lambda K H
0.267 0.0474 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 1100, Extension: 100
Number of Hits to DB: 11,037,060
Number of Sequences: 0
Number of extensions: 1069495
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of query: 0
length of database: 5,506,404
effective HSP length: 100
effective length of query: -100
effective length of database: 3,702,504
effective search space: -370250400
effective search space used: 2162262336
T: 11
A: 40
X1: 1600 (734.0 bits)
X2: 3800 (1463.8 bits)
X3: 6400 (2465.3 bits)
S1: 4100 (1883.8 bits)
S2: 66 (29.8 bits)